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EBI DbfetchID BC003228; SV 1; linear; mRNA; STD; MUS; 1033 BP. XX AC BC003228; XX DT 09-MAR-2001 (Rel. 67, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 17) XX DE Mus musculus glutathione peroxidase 7, mRNA (cDNA clone MGC:6581 DE IMAGE:3483448), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1033 RX DOI; 10.1073/pnas.242603899 RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1033 RG NIH MGC Project RA ; RT ; RL Submitted (20-FEB-2001) to the EMBL/GenBank/DDBJ databases. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR ASTD; TRAN00000130352. DR Ensembl-Gn; ENSMUSG00000028597; Mus_musculus. DR Ensembl-Tr; ENSMUST00000030332; Mus_musculus. DR Ensembl-Tr; ENSMUST00000097926; Mus_musculus. DR ImaGenes; IMAGp998M178514Q. DR ImaGenes; IRAKp961P166Q. DR ImaGenes; IRAVp968G072D. DR ImaGenes; IRAVp968M141Q. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Lothar Hennighausen Ph.D., Robin Humphreys CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 6 Row: p Column: 16 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 13195625. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1033 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="mix FVB/N, C57BL/6J" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam5" FT /clone="MGC:6581 IMAGE:3483448" FT /tissue_type="Mammary tumor. WAP-TGF alpha model. 7 months FT old, gross tissue." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..1033 FT /gene="Gpx7" FT /note="synonym: GPX6" FT CDS 38..598 FT /codon_start=1 FT /gene="Gpx7" FT /product="glutathione peroxidase 7" FT /db_xref="GOA:Q99LJ6" FT /db_xref="InterPro:IPR000889" FT /db_xref="InterPro:IPR012335" FT /db_xref="InterPro:IPR012336" FT /db_xref="InterPro:IPR013376" FT /db_xref="MGI:1914555" FT /db_xref="UniProtKB/Swiss-Prot:Q99LJ6" FT /protein_id="AAH03228.1" FT /translation="MVAAVATAWLLLWAAACAQSEQDFYDFKAVNIRGKLVSLEKYRGS FT VSLVVNVASECGFTDQNYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNREIENFAR FT RTYSVSFPMFSKIAVTGTGAHPAFKYLTQTSGKEPTWNFWKYLVDPDGKVVGAWDPTVP FT VAEIKPRITEQVMKLILRKREDL" FT misc_difference 1022..1033 FT /gene="Gpx7" FT /note="polyA tail: 12 bases do not align to the mouse FT genome." XX SQ Sequence 1033 BP; 264 A; 285 C; 270 G; 214 T; 0 other; ctttgccctc gccaagtcgc cacctcggga gtgaaccatg gttgcagctg tggcgacggc 60 gtggctgctc ctgtgggccg cggcctgcgc gcaatccgag caggacttct acgacttcaa 120 ggcggtcaac atccggggca agctggtgtc gctggagaag taccgtggct cggtttccct 180 ggtggtgaac gtagctagcg aatgtggctt cacagaccag aactaccgag ccttgcagca 240 gctgcagcgg gacctgggcc cccatcattt taatgtgctt gccttccctt gcaaccagtt 300 tggccaacag gaaccagaca ccaacaggga gattgagaac tttgcccgcc gcacctacag 360 tgtctctttt cccatgttta gcaagatcgc agtcactggc actggtgccc accctgcctt 420 caagtaccta acccagactt ctgggaagga gcccacctgg aacttctgga agtacctagt 480 ggacccagac ggaaaggtgg tgggagcatg ggaccccact gtgccagtgg cggagatcaa 540 gccccgtatt acagagcagg tgatgaaact catccttcgg aaacgagaag acttgtgacc 600 gggtccctct ggaactccca tccctccgca aactcaagtg gtgcttcacc ggcagagagc 660 taaagcttct cttcccttca ctcctcagag gacaaatcct aagacttgga tgatttgaat 720 ccaagagcaa cggacagcaa ctgcttgctg gccagtgaga gttcttaaca gcacatcacc 780 agccagcggg cctctagcca aaggaaacat ggcaaggcta tgaagaaaac atgtagatgg 840 atatgaggca atcctctacc tacccatgcc aagtcttacc tcacagggag gctgtgaaga 900 ttagcatcta atacccgtga acacgcctgg ggcagtgcta gtcgaagggg aagcactccg 960 cacggttttc tgcgtgtaaa caagcattat ttgtgataat aaaacctgag tttgacataa 1020 aaaaaaaaaa aaa 1033 // |
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