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EBI DbfetchID BAAF04042477; SV 1; linear; genomic DNA; WGS; VRT; 10512 BP. XX AC BAAF04042477; BAAF04000000; BAAF00000000; XX PR Project:16702; XX DT 06-APR-2007 (Rel. 91, Created) DT 25-JAN-2008 (Rel. 94, Last updated, Version 5) XX DE Oryzias latipes DNA, contig42477 in scaffold80, strain: Hd-rR. XX KW WGS. XX OS Oryzias latipes (Japanese medaka) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei; OC Acanthomorpha; Acanthopterygii; Percomorpha; Atherinomorpha; Beloniformes; OC Adrianichthyidae; Oryziinae; Oryzias. XX RN [1] RP 1-10512 RA Kasahara M., Sasaki S., Shin-i T., Naruse K., Takeda H., Morishita S., RA Kohara Y.; RT ; RL Submitted (15-JUN-2006) to the EMBL/GenBank/DDBJ databases. RL Contact:Masahiro Kasahara University of Tokyo, Department of Computational RL Biology; 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan XX RN [2] RX DOI; 10.1038/nature05846 RX PUBMED; 17554307. RA Kasahara M., Naruse K., Sasaki S., Nakatani Y., Qu W., Ahsan B., Yamada T., RA Nagayasu Y., Doi K., Kasai Y., Jinbo T., Kobayashi D., Shimada A., RA Toyoda A., Kuroki Y., Fujiyama A., Sasaki T., Shimizu A., Asakawa S., RA Shimizu N., Hashimoto S., Yang J., Lee Y., Matsushima K., Sugano S., RA Sakaizumi M., Narita T., Ohishi K., Haga S., Ohta F., Nomoto H., Nogata K., RA Morishita T., Endo T., Shin-i T., Takeda H., Morishita S., Kohara Y.; RT "The medaka draft genome and insights into vertebrate genome evolution"; RL Nature 447(7145):714-719(2007). XX DR EMBL-CON; DF083491. DR GOA; P0C5A1. DR HSSP; 1VHR; P51452. DR InterPro; IPR016130; Tyr_Pase_AS. DR UniProtKB/Swiss-Prot; P0C5A1; DUPD1_ORYLA. XX CC Medaka genome sequencing project web site provides more details CC and informative views of the genome assembly. CC URL:http://medaka.utgenome.org/ XX FH Key Location/Qualifiers FH FT source 1..10512 FT /organism="Oryzias latipes" FT /strain="Hd-rR" FT /mol_type="genomic DNA" FT /note="contig sequence: contig42477" FT /note="scaffold80" FT /db_xref="taxon:8090" XX SQ Sequence 10512 BP; 3218 A; 1960 C; 2059 G; 3275 T; 0 other; gtttttttgg ggaaaaaaaa aaggtttttt ttaaaaattt aaaaaccttt tccccctttt 60 tttttttttt tttggggggg gggggggggg ggtttgtgtg tgtgtctatg tgtgtgattg 120 gggtgaaata tgtctcacag ctgcaaataa agaaatacta ataataaaaa agacagcttt 180 gtacctcttg tttgactgcc gggtcaaatt gacccgaaca gtatctatgt gatatgaaca 240 tgcaggtggg ggttgcatat atgtgagatg aaccattttc ataatgtatg ttgaatacgc 300 taattaaggc aagcagaaga agtttcacgc tgaaaaaata cttttaacta tttttccaag 360 atgtttaaac tttaaaacgg gtcaatttga cccacaacat aacaggaggg ttaaaacgaa 420 acaaaaaaac gataatcata tgatttcttt ataataaagt agtttctgca tgtccctgtg 480 attattatta ttgttgttac tattattatt attattagta gtagtattta atatttattt 540 atttattatg aatctcattt tcgataataa tttcaataat aattgtaatt ataattttta 600 ataattgaat attcttaatt taatatgaat ttcatttttt atgtcctttt ttgatgttat 660 attgattatt tctgaatatc gtttttttgc tgccacagat atatgaaatt tccccattgt 720 gggattaata aagtcatcat ctaactatct atctgtcaat gttgcatctg acatgttgcc 780 tggcaactac aataccgtac atcgtcatga caacccctgg agtcttcaag cattcttttg 840 attggttgga cttctatttt ccctggagtc tttcaacagt acttccaagg atcaaaatgt 900 ttttattttt atttttaatg acactgaaac tgataattga aaaattgtta aaattcacaa 960 aagattgggt atgtgcataa actctgaacc tctatcagac caaaacaagg tcaaagtggc 1020 ttttttctct catatcatac atttatccaa aacaagtgaa attttagatt tcctaataaa 1080 aacaagtacc agcaactgtg attgaatctt actaagtgtc tgtctgtatg tgaaacttta 1140 ttgttatttt tattttatga gaataattct agggctcaac ctgatctgtc aatcctttat 1200 gggtttatag ttacagttat aaaaagaacg ttgacagtaa agggagtcag tgatgtagga 1260 ctaagaccca atgtcagaga actctgcaaa gctgtaaact gaggtgagtc ctgcagaatt 1320 gtaggtgtca atcatttctg gatcctttaa gggtgattgt tgtcttaaga aaaagcatga 1380 ctgacataat tcttatgaag caattatgta tttagaattt gacactgttc ttttcttgct 1440 cttagtagtt tagcagtatg tctctaaggg atcctccata cgaagctccg tctgtctcag 1500 agttgcagga gtttctgttg gcagacaggc gaccaactgg ccatgtcaat caagtctggc 1560 ccaacctcta cataggcaac gagtaagatc cccatacaat aagatgactg cgcccgagct 1620 gtaaacacac acgcttcagc ttgtgatcgt gtttcagagt ggcagctcgt gacaagagtc 1680 ttctgcacag tctgggcata actcacatag taaacgccgc tcatggacgc tccaagccga 1740 cccctggccc ctgttttcac gtgaacactg gcccgctgtt ctacagagat atgacagtgg 1800 attattatgg ggtggaggct gtggatgctg tggagttcat cctcagtcct tttttctacc 1860 caacagcacg atacatcaga gctgcactct ccacaggagg caagtcacat ttggaaactc 1920 agaggagaaa ttggtttgag catattctcg tgtttgggtt gccacaagca gggttactgt 1980 aatctaagta agtcagtaag tgtggcaaaa cgttttgcct tttacctgca aaaatttgca 2040 aaacaacaca ctaaaatgta caaatcttta ataaattctc agtgaaacag ctgctccacc 2100 ttaatctcac ttgagctaaa gatgaatatt cttgcttcag gacgtgtgtt tgtacactgt 2160 ctgatgggtg tgagccgctc tgcgacctta gtcttggcct tcctgatgat tgttgaaggc 2220 ctgacgctgc agaaggcggt ggctgttgtc aggcttcaga gagacatctg tcccaaccga 2280 ggcttcctgc agcagctccg cggcctggac atgagcctgg aacgagagag gaggagaaag 2340 aggcagactc gggcagtgta gactttcaga cacatgtcat aatatcaatt tatgggcata 2400 gagtcatttt aattggtaca gcggcttttt agaccaacaa gtgaaatacc ttctttgaca 2460 gagctgcaga ataattcttg gacaaacata aatggactga ccaagtcttt aaggagagat 2520 gtgaaaaaaa gtaacatccc aaagggttta cagaacacac tatgtgttgc aaatctgtag 2580 cgtggaataa agagaacatt ttgcagccaa cacatcaaaa cagaaaagag atgctgtttt 2640 tttagccttg ctgcacagcg aattgattgg gctctgaaga aaaaggccat ttcttcctga 2700 aagggcgtcc atagattaaa aaaaaaaatg catgattctg tttttaccaa gaaaaaccag 2760 aaagtcactg tcctaaaatt taagacttta caatttaaaa tgagtaattt aacactattt 2820 atggctataa aagtaacaag tcaaaatatt ttaccccatt gacggatttt cttctaacta 2880 aacaacagaa tctacaacgg cggagaaaat cgtctgacca aatatcctta ttttaagaaa 2940 aaaatgttgt tactaagaca tattttctca aaataggatt atttggctat tgaaaatttt 3000 tcttcataat attatttatc tttgtaatac agataaaaga cacatttatt ataccaatgg 3060 gagtttttgc agtgtttaaa caatttaatc cccctggacc atgggtgtca ggtgctttgc 3120 agcgctggaa ctgtcatatc ataacaggtg gacatacacc tccactgaag gaacaaaaat 3180 gtaattgtgc tgataagatc ctgttatttt tattctcttc agtaaaatgt atatagatcc 3240 atacatttgt cattacatct gtaacggccc ctaaaacaat attgatgcaa cagcttacaa 3300 ccaactcctg caaagataat tattgattgg aggtgtgtct acaaggaggt tttttttttc 3360 ctttcgctgt acaacagcgc ttagagacga gaaattgttt gtgagtgtga tgcatatgtc 3420 aggtgttgta ttcctgctgc ctaaaaatac tctaaacact gagcttgaga gagccgttac 3480 cattccagct ctgtatttga ctccataatt ccacagtaga taggtctctg gagtatacag 3540 acacacacac acagttaatg gaagttctct gaagatagtt gaggtcacta ttctgttctg 3600 tgaaggattt caaagaggta agaactcccg ttttggtatt ttaaatactt tttccttcat 3660 tttctttttg aaacaattta aggcttctat ggttgcttaa gtcgttttaa tgaggctaaa 3720 taaattgtaa aaataaaaaa ggggaaacga ttcaaaccag taatgattca aactttattt 3780 aaaagctaaa gttgtttcat tgtactttct ttttcccatt ttttacttgg aaaataaagg 3840 gccaattttc ttcaaatcta aaaccattcg gaattttttc aaataaaaag agaacattta 3900 cacaaaacca cacattttat cattggctga atgtgaattc tctgactaaa ataggagaaa 3960 catgtcctcc tgtgtggaaa agtccagagg taggaatccg tatgcagcgg tacaggtgga 4020 cccggacagt gactacatca caccaggaac tctagacttg gagcagcttt tctggtctgg 4080 acccacagct cagtatgcac acgtcaacca ggtgtggccg agaatttacc ttggcgacga 4140 gtgagtgaac tcagattaga tctctgctcc ggcatatgag cacatgtgtt agatgtttgt 4200 gtgcaagctg agtgtgtgtt taatgtgcaa acaggaaaac agctttggag aggcctgctt 4260 tgaaggatct gggaattaca catgtcctca atgcggcagt aggaaagtgg aacaacgtgc 4320 tgactggtgc agattactac actggcatga acattcggta cttgggtgtt gaagctgatg 4380 acaaacccac ttttaacatt tctcagtact tcagtcaagc tgcagaattt attcacgagg 4440 ccctcatcca cccacagagt aagccttaac tgggggagac acactctgat gttattattg 4500 tatgaatgtt tggtccaaca agcatctgct ctttcttttc agacatggtt ctggtgcact 4560 gtgtgatggg tcggagccgg tcggcaactt tagttttggc gtatttgatg ataaaggaac 4620 atttatccgt tgtggatgct gtggagcatg tacgacagcg ccgctgtatc ctgcccaatc 4680 atggtttcct gaaacagctc agggctttgg acatcgccct gcaggaggag aagctgagac 4740 tgaaaaggaa agatgaatga gttcacacct cctaaataat tttactaaag acttccaatt 4800 tttcattgtt ttattctcat gtaatcataa aacgttctgt ttttgaattg cactttttat 4860 gtcttttttt tctttttcca tttaaaaaaa catgtttgaa cgccagattt agatttagat 4920 gggagttaac ttatacatga tttgcaagtc caggctgtcc tctgccgaga tagactctgg 4980 cagacccgcg accctgaaag ggataaaacg gaatagaaaa tgaacgaatg aatgagtgat 5040 ttgaaagttt ccccttaaaa tccttttttt aaatctattt ttttttccct gaactaactc 5100 tagataatgt tcaaatgtgt gattttacta gtcacatgta gagaaactgg tatcaacaag 5160 gcaatatgaa tgtacatata aattaacata ttttaaagtg aatcaatatt tttgacaaat 5220 ttcaataaat ctacattttt aggatttctg tttgaaaaac ataaaaaaaa ggaatcagca 5280 agataccata atattgtagc atcatcagtt gttggcattg ccattattga aaggctggaa 5340 ttcactgatg aaaccacatt ctggaagaat aattagacaa gtttaagctt gtttagctca 5400 taatcatgct gattgaaatt tctcaaaaac acaacaaatt ttttacacta tattcttgta 5460 tttttaggct ctggccttta agcatcactt tagattgtat tttttgtatt cctggagcct 5520 aaagaagaaa ctggaaaagg ctggggtgaa aaaagtttaa aatgttttat ttatgtcaaa 5580 gcaaaaaaaa aacacacaca caacacaaat gtaacatttg tggaccctca cacatgaata 5640 aataaaagac tatttaatca aatgacattt aaatgtttta acaacagaat tatacttaat 5700 tgaactattc acaacatgta aatgtattaa attgaaaata aatattcaaa aatgtcaaaa 5760 atgactgtgc agagatggaa ggatgtcaaa gaagcgggca cagtctcctt tttctttcta 5820 gctgttcatc cagcttgaga agaagagaca ggaaattccg gtttggataa atggctcgtt 5880 tctggacgac ctgccttaga gcatccctca aggtgagtcg ctcttttaac atgaggtacg 5940 ccaggatcag cgtggccgat cgactcacac ccatgatgca gtgcaccagc actcttcctg 6000 taaaaaataa gggaaaaaaa gtgaggctgc aaatgtctac tgaaactctg gatgccacgt 6060 tgctgaaccc tcactttacc ttccttactc tgcaggcctt tatgtatgaa gtcagcagca 6120 actttgaaat actgactcag gtcaaaatga tccgaatcct ctgctgggat accaaagtaa 6180 acacatgcgc ttccataaaa gctctggtca ccgatgctgc cctgcttgga gtgcgctgcg 6240 ttcagcacat gagtgatgct gagatcacgt aatatctttt tgttctgtgc agcagcccta 6300 gagcacccac aagacaacac ttcaaaacac tcaaccaagc aaaaggtgtc agttgtgtca 6360 ttgctattgt taaaaatgtg tttttgtatt taattttgac tccacataaa acaccaaaat 6420 gttaaggaaa atacgatcaa tcttgttgaa aacaaaaaaa aaacaggctt taacactttt 6480 aaaatcacag ctatcggcta atatatggtc atgatttaac tcttaacaat gaagatagta 6540 aaatataaac ttatgataaa ggattgtatt cctgctcata aatggaaggc actcacacat 6600 ttcctaggaa caagctgggc cagatttcat ccactgctgt gagctccagc ttgcaggaat 6660 ccaaaatgag ctccagctcc ttaatgagca gcaggtcgtg ttgctgtttg ctccctgaca 6720 ttctgcctgc acacagtgta accttcagca gatgtccagg gttctgccac tgtctgagct 6780 tgctgcagct cagcaacaca aatgccacag tctacagaga ggggtagggg taggtgcttc 6840 tgcgctaaaa ttacccctct gtgttcagtg tgctgtctgg tgggattcat agttatgtaa 6900 tttgtctgat ggattgatcc tccaatgatg gtctcttctc acatcagaac gagaaaatca 6960 attgttagcc tctactctca tgctatgcaa atagaaatac ccacaatatt gttatttata 7020 taaatgcttt tcttatatgg tctgaatttt agtgaaatac ctgaaagttc cctttgatat 7080 tacaaataaa aaatgggaag aaaaaacaca attctcatca ttttgacatc aacatctcat 7140 gctccacacc agccttgtga tgttgttctg agttaatgtg ttatactcat ctgcaagtgc 7200 tacctaaagt tctcctaggt cactctggcg tccagtcatc cagtttctgc ttcagcaggt 7260 cccagacgtg ctccatgggg ttcaggtcag aggtcattgc ttgccaaacc cacaaaggca 7320 ctcccacttc ctgaagttga gctctgacaa ttctggcacc atgtggtgga gcgttatcat 7380 ccatgaacag aaggtggggg gtgttctggt agaattggag gatgattatg ggttccatga 7440 taaggtaaca aaatgcagtg actgggtcat caacaataac cgaacagttc cgcgctgact 7500 ggtgatgacg gcccagactg ttgcacctcc tccaccaaag ccaaccatag ggtccatgtt 7560 gaccacagtg tgtcgctcac ctcaccttct ccagcaaagg taacaaccat cattgatatg 7620 gaaggtgaca caacaatcat cagtgaacag gacggtcgac ctgtatgatc aattttccaa 7680 ttttcatgtt ttgacccata catcactact aaatccaagt ccctgattgt caaaggtcaa 7740 cttatttagc cttatacgtg tgtttaatcg caacccattt tgtacatgga gcccgaaagc 7800 aaacttaaaa acatgcgtag tgacgcgtga agttttttcg ttgagaatcc accagcaaaa 7860 tcagattttt atctccacag aatgttaaaa ttgatgccac aatgacaagg gtttttttga 7920 gaattttctg gttttgacca caaaccgtac acacagaaac cattattaca aaatgaagtg 7980 tgtctatcac tccaatacaa ttacccccca tcctaaaaat gtgtgaagtg aatttgaaca 8040 ctgtgtatac aacatccatt gagtttttca caatattcca aacttcttgt aaaaaaataa 8100 ataaagtcat tgtctaactg tgagcttttt ttctcgcagt ttttgatcca ggtcaagaag 8160 ctgtcgtaag aatcctctat tgggaaaaat ccagcgcttc ggttgcacac agcgtatgga 8220 ggataaaagg ctgagatgat gatgaatcat caggtaagcc aggaccaaag ctgctgagcg 8280 actcacaccc actgcacagt gaacaaaaac cttccctgga aatcccaaaa gaagaaaagt 8340 taccaacatt tttcaaatgt tccactccct ttataaagtt tatcaaagat gcagtgtacc 8400 tcctgatgtt aaaccttggt gaatgaactc tgctgcagga tagaaaaatg gtgagaggtc 8460 aaaagtgggc agatcatgag ctggaactcc atagtatttc actgtggtgc catagaaatc 8520 atcactgcct ctgcagcaga gtttgccgtg tgaggcattt agcacgtgag tgatgcccag 8580 ctgccacaac gagaacttgt cgtgagacat gaccctgaca tgaggacaaa aacaaaacaa 8640 aatcttaaga atctagaagc atctgtctga aacactgcac tgggatactc acatgtctcc 8700 taagtacaat tttggccaaa cttcatctcc atggtgacac gagtgaggac ctgagtgcag 8760 aacatcttcc aggtcctgga gagatacaag ctcatcttcc acacacttgt cctccacctt 8820 cgtagtatcc tcagaggaag ctgcacaact agttccttct cccgttgaag ctcccattga 8880 aggctttcta tttgacattg cactgtttgt ggtttgaatt ccgtcttctt gcactttgga 8940 taaactgctg cttcacactt ccccccctgt cagctggtga ctgttttaaa caggtggtgc 9000 gctttggctt attaactcta cactgtgact ttatgattat gtaacggttt acgcacggat 9060 ttcagagagc attaatattt aaattttggg tttggtttgg tttaaattac ttaaaagacc 9120 cactctaatg aaaatcatgt ttttggtgtt tttaacatgt tcttgtagta tttttcttat 9180 gatggaggac atatttttta ggtaaattaa acttgaagtt gcatttctga gtatttgtat 9240 attcaaagtt gtgaatcaga actgggcaaa gaaatgctgt ttgaaaaaga ttgtacttct 9300 tacgtagaag atgtgcttgg tggctctctg ctcccagcac tgggaatgct tttacaaaag 9360 aacaaaagat gaacagagtg gaactttaaa caattgcaag tttatttatt tttactaaat 9420 taatataagg gtatattttt tgaccactag acaaaggaaa acttttttgt tcacatctga 9480 ataatttttt ttagtgttac tcaaggttat tgcttgagtt attttaagac ctgagctaat 9540 tcttgattta gccctcttaa catttagtca caggggttgg cagaatcata ataaaagacc 9600 actgggaata ttttagccaa aatataaaca tctgtgtagt tttctgggac atattttctg 9660 cagagcggca gcgttgtggg tgggaccaca ggggggtatt caagaaagca ggttatgtga 9720 tttaccacgg taagtttgag gctaagaaag catataacct catatttcgg ttccaaaaac 9780 aaaggtatgt ttcagggtat gcttagttcc catagcaact catgctctga acaaaacctg 9840 gtctggagca ggtttagttg aaggttagat tgttttttag tgaatgaaga aggtcagata 9900 atactttttc caccttgaga gggtgatgag atcatgtatg gatgttgtag atataaactt 9960 attacattaa tttatattaa ttatttgctt cagttaatta aataattttt ttgagttcag 10020 tcaacttaaa aataacacat agttatcaga caattatttt actttcattc aaattaaccc 10080 aattaagtag gtgtaatttg gcagcacaag gaattgtggg ataccattcc ctttgcctgt 10140 ctggaaggat ttgggtatac aagtgtagtt ttttgtcaaa atatgtttag ttgtagctgt 10200 tttcctgtgt tttgccgagt tattttaccc tgttatgttt aattctttct gccccatgag 10260 tgaaaggatg atgagcttat ttagcagcgc tagtggaaat ttatggtaga agaactgaag 10320 ttacagtcag tcatgataaa ttaattccat gatgtatatt gtaaatccac acggtatcat 10380 ttattttaat tttataaaaa tgataaaagt ttcataagtt gcatatatat atacatcaca 10440 atgtaattgg aaataagatc agatactcat gcgttaatat aactttttcc gttatttttc 10500 tccaagcaga aa 10512 // |
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