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EBI DbfetchID AY924393; SV 1; linear; genomic RNA; STD; VRL; 7141 BP. XX AC AY924393; XX DT 02-DEC-2007 (Rel. 94, Created) DT 02-DEC-2007 (Rel. 94, Last updated, Version 1) XX DE Tamiami virus strain W 10777 segment L, complete sequence. XX KW . XX OS Tamiami virus OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus; OC New world arenaviruses. XX RN [1] RP 1-7141 RX DOI; 10.1016/j.virol.2007.05.031 RX PUBMED; 17624390. RA Cajimat M.N., Milazzo M.L., Hess B.D., Rood M.P., Fulhorst C.F.; RT "Principal host relationships and evolutionary history of the North RT American arenaviruses"; RL Virology 367(2):235-243(2007). XX RN [2] RP 1-7141 RA Cajimat M.N.B., Fulhorst C.F.; RT ; RL Submitted (08-FEB-2005) to the EMBL/GenBank/DDBJ databases. RL Pathology, University of Texas Medical Branch, 301 University Blvd., RL Galveston, TX 77555-0609, USA XX FH Key Location/Qualifiers FH FT source 1..7141 FT /organism="Tamiami virus" FT /segment="L" FT /host="Sigmodon hispidus" FT /strain="W 10777" FT /mol_type="genomic RNA" FT /country="USA:Florida" FT /db_xref="taxon:45223" FT misc_feature 1..79 FT /note="5' non-coding region" FT primer_bind 1..19 FT CDS 80..367 FT /codon_start=1 FT /product="Z protein" FT /db_xref="GOA:A9JR22" FT /db_xref="InterPro:IPR017907" FT /db_xref="UniProtKB/Swiss-Prot:A9JR22" FT /protein_id="AAX99348.1" FT /translation="MGLRYSKEVRDRHGDKDPEGRIPITQTMPQTLYGRYNCKSCWFAN FT KGLIKCSNHYICLRCLTSMLNRTDYCEICGEVLPKRLTFETTPTAPPYTP" FT misc_feature 368..445 FT /note="intergenic region; IR" FT CDS complement(446..7111) FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="RdRp" FT /db_xref="GOA:A9JR23" FT /db_xref="InterPro:IPR010453" FT /db_xref="UniProtKB/Swiss-Prot:A9JR23" FT /protein_id="AAX99349.1" FT /translation="MSECLTYFNELKDLVRKWVPDEDTYVEQKTVLLSQVNFSSIVTEG FT LKLLSTLIEVDSCVKHGCIHNRSKTVNQILYDHRIVGPTLPDVVPDGYRVSGSTLILLE FT TFVRVNQESFECKYRHDFEKLMQLSKDLAKCGLTLVPVIDGRSSYYIERLPDWVIERMR FT WLLLRIMSNLRDSGEKIEEMEYERLVHSLSNMENQNLGLESLASLREEGLDYKTRLTKT FT LKEGIYSNMTTSECRVGIAKLYDHFCLLRDSGQYEDVYTTTSRSEMITWLKTHELVQMS FT SSERETLIEAETCKFCQIHMYAVLKDLVLLRKGWKGSRCRDANEILAHKSLLSDCNKIK FT GLKVLNTRRNTLLCLDIIVLNSLINLIKLQYTDLQYLINNHFKSVNDRLVSVDLIINKL FT DKKLTSDPNWLCKLRTKIGHKLKIYDLDHVISWLRPIEVSHWYEFKLERDNSGECVKPT FT IKYKKSGVGDCQGEDCNKDVITDDSTFSDYLDALSTLSMGLMNSMKTSSATKLVVNDER FT NYFGTVQCDECYFQDLDINYGTTLIYQKTGERTRCYGLMSKEGGGPDVYKVGKSFYADP FT KRYFLPIMSSEVILKMCREMLSWLDWLSEKEMMDVRTKLYTLVISILTVPSKRVQIYLQ FT GFRYFIMAYVNEFHVKELVCKLKVKPLTRAELSVFTQMDDLVALLLTGTSEEHMTKSFK FT FILNLSYLCHLITKETPDRLTDQIKCFEKFLEPKLTFNSVILNLDSSPQLTEGTEEKII FT GDLKKLFSKDLGVLDLKEPGVSKEVLSLCSSCFNNGMLSLPKVLSRDPQSPSFTSTALD FT ISSNKSVVVPKLNEVGETITQYDYQSLLSSVVVEMAQSFKDKLRFKLDRRSLQYAIYKR FT LTNMVSKNEFRSKDDPNDSGILEDIEDLVDEGTHKLINEIEANVSDCLSKMSSGCNKSN FT QSSKGLKKFEKVDLLQKLWSREYMSLILSETSFHEVKDFDPSLLPSESYQEMCDAVYDS FT VYRNEFFTEKFLKLCPLELLIKNLATKHYEEGDYFECFKYLLIGAGCDNRVGRFDHRSR FT ARLGFKDTATLVKEESRISSRESNSEAISKRLDKSFFTNSSLRNLCFYSEESPTYRSSV FT SSSVGKLKFGLSYKEQVGSNRELYIGDLNTKLTSRLIEDYFESLTSECRFSCLNNDSEF FT ERALLDMKSVVRLSGLAVSLDHSKWGPYMSPAIFNALFSNLDLQLKDGGLIDKSPIENL FT LNWHLHKIVEVPYNVVEAYLKGYTKRSLGLMDRSSSSMTEDYFFRQFAKGVVPSHITSV FT LDMGQGILHNASDYYGLLTEQFITLCLELCFDVKMTAYTSSDDEIMLSNSYSLKRESDD FT DLLDMEKCKEILEFHYYLSSKLNKFISPKTVAGSFASEFKSRFFIWSQEVPLLTKFVAA FT ALHNVKAKSPHQLAETIDTILDQCAANGVSIEIINELSKRTNRLISYSGHPVDPFLCVF FT TTDLKDWVDGSRGYRLQRSIESIINSEEILSTIRDSCRQLFYMIRSGRIQEEYLISALQ FT SSPDDCLRQMLKITGTNDSLIEEALTTRWLNLRAFGDLRLVLRTKIMTGTRILDKEEVP FT SLIKSVQSKLSKNFVRGAKKIITDAINKSAFQSSICSGFIGLCKSMGSKCVRDGSGGFI FT YIKDLLKKIDRHTNCEVCCPLLSVFCEHSLRQVAPYSRPLLWDYFSLTFSNACELGNWV FT FSKVELPRPPLGSMNPNFFWPVKPGSHSELEDKVNMNHVLYSIKRNFPDLFDEHIAPFL FT SDLNSLKVSWVQRIKFLDLCVAMDMSSECLGIISHIMRKRREELYIVKQEELSVCHIRE FT SCSLEKGLQLNSVEICQNFLTQLLFESMLNPVLLSTSQFKKYFWYGEVEFLPNDADHDL FT GQLTQFIMDCKLLNISRCMCLDDLDVGYVHSKIELSQVFINLSTFINLVDWENRESYQS FT FDEVLIHSNADHIPLEIGIILSHTRKSFKFRYERKTNYYVKCGITIQKSEISSFSTTLS FT DGFELHVEEIDCYVSGSEGDHISLDGVGLVPLHPLFSGKEALDLNKLLSDQDIEFKQIS FT LVFSKVKLDFKDHVKDLKNKFSYKLQGPEQGLEPLHLDKGQIMERNTVVSRLEVPVTSR FT SLFLALEALDPGNRPRFLSSLHEYMRKRPGKKDPCFVRMTQQDLCLLVELYEAAFMQVL FT SAVSDWIEFGCFALCFSKTLNCIMIADDGGDYRLKGRPCKTLSAQKTLTDIE" FT misc_feature 7112..7141 FT /note="3' non-coding region" FT primer_bind complement(7123..7141) XX SQ Sequence 7141 BP; 2080 A; 1612 C; 1257 G; 2192 T; 0 other; cgcaccgtgg atcctaggca gttacagact ctgcgcttag aggctcaaat accactactt 60 taggacctta ttttcaccaa tgggtctgag atactccaaa gaggtcaggg accgtcacgg 120 cgacaaagac ccagaaggga ggatcccaat cactcaaacc atgcctcaga cactgtacgg 180 caggtacaac tgtaaatcat gttggttcgc caataagggg ttgatcaaat gtagcaacca 240 ttacatatgt ctcaggtgcc taacctcaat gttaaacagg actgactact gcgagatctg 300 tggtgaagtg ctgccaaaga ggctcacctt tgagacgacc ccaacagctc caccctatac 360 tccctgaaca cacatggggc ccagggcaca cccccaatgg gggtgtgccc tcggggcccc 420 cccgggcccc tcgggcccgg ggagtctact cgatgtcggt gagtgttttc tgtgcagata 480 gggtcttgca gggcctacct ttcagcctgt aatccccacc gtcatcggct atcataatgc 540 agttgagagt cttgctgaaa cacaaagcaa aacagccaaa ctctatccaa tctgagactg 600 cactaaggac ttgcatgaaa gcagcctcat atagttcaac caataggcac aagtcctgtt 660 gtgtcattcg aacaaaacag gggtctttct tccctggcct tttcctcatg tactcatgta 720 gggatgaaag aaatctaggt ctattaccag ggtccagagc ttctaaggca aggaagagtg 780 atcttgatgt cactggtacc tcaagtcttg aaacaacagt attcctttcc attatctggc 840 ccttgtccag atgtaagggt tccaggcctt gctctggacc ctgtaacttg taagagaatt 900 tattctttag gtctttaaca tggtccttga aatcaagttt cacctttgag aatacaagcg 960 aaatttgctt gaactcaatg tcttgatcac ttaaaagttt attgaggtcc agtgcctcct 1020 tccctgagaa cagagggtgc agtgggacca aaccaactcc gtccagactt atatggtccc 1080 cctcagagcc actcacatag caatcaatct cctcaacatg aagttcaaag ccatcagaca 1140 aggttgtgct aaatgatgat atttcactct tttgaattgt gattccacat ttcacataat 1200 agttcgtctt cctttcatac ctaaatttaa agcttttcct tgtgtgtgaa agaattattc 1260 caatctcaag gggtatgtga tcagcattcg aatgaatcaa aacttcatca aagctttgat 1320 aactttctct attttcccaa tcaaccaagt tgataaaagt tgataaattt atgaaaactt 1380 gtgataattc aattttacta tgaacgtatc ctacatcgag atcatcaaga cacatacacc 1440 ttgatatgtt caacaatttg caatccatga tgaattgggt tagttgccct aaatcatgat 1500 cagcatcatt tgggagaaat tcgacttcac cataccagaa atactttttg aactggcttg 1560 tactcagcag cactgggttc aacatggatt caaataacaa ttgtgtcaga aaattctgac 1620 atatctccac agagttcaac tgaagaccct tttccaacga gcaagactct cgtatatgac 1680 atacagacaa ctcctcttgt tttacaatat acaattcttc tcttctcttc ctcataatat 1740 gagagataat acccaaacat tcactagaca tatccatggc aacacacagg tctaaaaatt 1800 ttattctctg aacccaactt acctttaatg agttcaggtc agataaaaat ggagcaatat 1860 gctcatcgaa gagatcagga aagttcctct tgattgagta taggacatgg ttcatattga 1920 ctttgtcttc taactcagag tggcttccag gcttcacagg ccaaaaaaag ttcggattca 1980 ttgaccccaa agggggtcta ggaagctcaa cctttgagaa gacccaattt cccaactcac 2040 atgcattaga aaatgttagt gagaaatagt cccaaaggag tggccttgaa tacggcgcca 2100 cctgtcttaa actatgttca cagaagacac ttaataatgg gcagcacact tcacagtttg 2160 tatgcctatc aatcttcttc aataaatctt taatatatat aaatcctcca gatccatccc 2220 tcacgcattt tgaacccatg cttttgcaca gcccaatgaa cccagaacag atgctacttt 2280 ggaaggcaga cttgtttatt gcatctgtta ttatcttttt agcccctctg acaaagtttt 2340 ttgaaagttt tgattggact gacttaatca atgaaggcac ctcttcttta tctaaaattc 2400 tagttcctgt catgattttt gttcttaaca ccagtcttaa atcaccaaaa gcccttaaat 2460 tcaaccacct cgttgtaagt gcctcttcaa tcagagagtc attcgttcct gttatcttta 2520 gcatctgtct caagcaatca tctggtgatg attggagtgc acttattaag tattcttcct 2580 gtattcggcc tgatcttatc atgtaaaaca gttgtctgca ggaatcccta attgtggaga 2640 gtatctcttc actgttgatg atggattcta tcgacctctg caatcggtaa ccccttgaac 2700 catcaaccca atctttcaaa tctgtcgtaa acacacacaa aaatgggtca actgggtgcc 2760 cactataaga gatcaatctg tttgtcctct ttgataattc attaatgatc tctattgata 2820 caccattggc tgcacactga tccaagattg tgtcaatagt ttcagcaagc tggtgaggtg 2880 atttagcttt cacattgtgc aatgctgcgg caacaaattt tgtcagtaag ggaacttctt 2940 gagaccaaat aaaaaatctg gacttaaact cacttgcaaa cgaaccagca actgttttgg 3000 ggctgataaa tttattaagc tttgaagata aataataatg aaattcaaga atttctttac 3060 acttttccat atctaataga tcatcatcgg actccctttt tagagagtag gagttgctta 3120 acatgatctc atcatcactt gatgtgtatg cagtcatctt cacatcaaag cagagctcta 3180 aacacagggt gataaattgc tcagtcaaca acccataata atctgaagca ttgtgtagga 3240 ttccttgccc catatctaag actgatgtaa tgtgagaagg aaccacacct tttgcaaatt 3300 gtctgaagaa ataatcttca gtcattgaac ttgatgacct atccatcagg cctagacttc 3360 tttttgtata acctttcagg taagcctcca caacattata aggaacctca acaatcttgt 3420 gtaaatgcca attaagtaaa ttttcaattg ggctcttatc aataaggcct ccatctttta 3480 gctggagatc caggttagaa aagagtgcat taaatattgc tggtgacatg tacggccccc 3540 attttgaatg gtcaaggctc actgccagac cagaaagacg gaccacggat ttcatgtcta 3600 ggagtgctct ctcaaactct gagtcattat tcagacatga gaatctgcat tctgatgtta 3660 aggactcaaa gtaatcctct attagcctac tagtgagctt tgtgtttaaa tcaccaatat 3720 aaagctccct attgctacct acctgttctt tatacgacaa gccgaattta agtttcccta 3780 cgctggatga aactgaggat ctataagttg gggactcttc ggaataaaaa cacaaatttc 3840 taagggagga gttggtaaaa aaactcttgt ctaacctttt ggaaatagct tctgaattac 3900 tttctctcga acttattctt gattcttctt taacaagtgt ggctgtgtcc ttaaaaccga 3960 gtctagctct gcttctatga tcaaacctac caactctgtt atcacaacct gctcctatta 4020 gcaaatattt gaagcactca aagtaatctc cttcctcata gtgttttgtt gctaagttct 4080 tgatcaacag ttccaatggg cagagtttta aaaacttttc agtgaagaac tcatttctat 4140 aaacactatc ataaacagca tcacacatct cctgataact ttcactagga agcaatgaag 4200 ggtcaaagtc cttcacttca tggaaagagg tttcactaag tatgagagac atatattccc 4260 tggaccataa cttttgaagc agatcaactt tctcaaattt cttgagaccc ttagaacttt 4320 ggttggattt attgcaccct gagctcattt tgcttaaaca atcagaaaca ttagcctcaa 4380 tttcatttat cagcttatgt gttccctcgt caactaaatc ttcgatgtct tcaagtatcc 4440 cactatcatt tggatcatct tttgatctaa attcattttt cgacaccatg ttggttagac 4500 gtttgtaaat ggcatattgt aaacttctcc tatccaactt aaacctcagc ttgtccttaa 4560 aagactgggc catctcaaca acaactgacg atagaaggct ttgatagtca tactgtgtta 4620 ttgtctcccc aacctcattc aatttcggga caacaacgct cttattgcta gatatgtcta 4680 aagctgtact tgtgaaagaa ggtgattgtg ggtcacggct taacactttc ggcagagaaa 4740 gcataccatt attaaaacaa gaagaacaga gtgacaacac ttcctttgag acccctggtt 4800 ccttcagatc aagaacacca aggtccttag aaaacaattt ctttagatcg cctattattt 4860 tttcctcagt tccctctgtt aactgagggg atgagtctag gtttaggatg actgaattga 4920 aggttaactt aggctccaga aacttttcaa aacacttgat ttgatctgta agccggtctg 4980 gcgtttcctt tgtaataagg tgacataaat aagacagatt tagaataaat ttaaatgact 5040 ttgtcatatg ttcctctgaa gtcccagtta gcagcaaggc gactaaatca tccatctgtg 5100 tgaagacact cagctcagcc ctggttaatg gcttcacttt taacttgcaa actaattctt 5160 taacatgaaa ttcattgaca taagccatga taaaatatcg aaaaccttgc aaataaatct 5220 gaactctttt gctgggaact gtcaatatac ttatgaccag ggtatatagt ttagtcctca 5280 catccatcat ttctttttct gaaagccagt caagccaaga caacatttct cggcacatct 5340 tgaggatgac ctcagaactc ataattggta aaaaatacct cttagggtct gcatagaagc 5400 tcttgcctac cttataaaca tcagggccac ctccctcctt tgacatcaga ccataacacc 5460 tcgtcctttc gccggtcttt tgatatataa gagtggttcc ataattgatg tccaagtcct 5520 gaaaataaca ttcatcacat tgaactgtgc caaagtaatt tctctcatca tttaccacca 5580 acttggttgc tgaacttgtc ttcattgagt tcataagacc catactcaaa gttgataatg 5640 catctaaata atcactgaag gtggagtcat ctgttatcac atctttgtta caatcctcac 5700 cctgacaatc ccctacacca ctcttcttgt acttgattgt gggtttcaca cattcaccgg 5760 aattatccct ttccaacttg aattcatacc aatgggacac ctcaataggc ctcagccatg 5820 atataacgtg atcaagatca tatattttaa gtttatgccc tatcttggtt ctcagtttac 5880 acagccagtt tgggtctgat gtcagttttt tatcaagttt attaattatc aagtcaacag 5940 aaacaagcct gtcattgaca cttttgaaat ggttgttgat gaggtattgg aggtctgtat 6000 actggagttt aattaaattt atcaaactgt tgaggacaat tatatcaagg caaaggagtg 6060 tgttccgtct tgtgttaaga accttcaatc cctttatttt gttgcaatct gacaaaagac 6120 tcttgtgtgc caaaatctca ttggcatctc tgcacctgga gcccttccac ccctttctaa 6180 gtagcacaag atctttcaga acggcataca tatgaatttg acaaaattta caagtttcag 6240 cttctattaa agtctccctt tcactgcttg acatttgcac caattcatgg gtctttaacc 6300 atgtgatcat ctcagatctt gatgttgtgg tgtatacatc ttcatattgt ccgctgtctc 6360 gtaaaagaca gaagtgatca taaagctttg caatacctac tctgcattct gaagtggtca 6420 tgttcgaata gatcccctct tttagtgttt ttgttaatct tgtcttgtaa tccagccctt 6480 cctcccttaa acttgcaagt gattcaagac ctaagttctg attctccatg tttgacaagc 6540 tgtgtactaa ccgttcatac tccatctctt ctattttctc accactgtct ctcaaattgc 6600 tcattatcct caataacaac cacctcatcc tttcgataac ccagtcaggt aagcgttcaa 6660 tgtagtagct tgatctgcca tcaatcacag gtacaagggt caagccacac ttggctagat 6720 ctttggacaa ttgcatcagt ttttcaaaat catgtctata cttgcattca aaggactctt 6780 gatttactct aacgaatgtc tcaagtaaga tcagtgtcga acctgacact ctgtagccat 6840 cgggaacaac gtcaggaagt gttggaccca ctattctatg gtcataaagt atctggttaa 6900 cagtcttgct tctgttgtgg atgcagccat gtttcacaca agagtcaacc tctatcagag 6960 ttgagaggag cttcaaccct tcggtcacaa tggaggaaaa attgacctgt gagagtaaaa 7020 ccgtcttttg ctccacatag gtgtcctcat ctggtaccca cttccttaca aggtccttca 7080 gttcattaaa gtaggtcaag cactcagaca tgatcaagga atgcctagga tccactgtgc 7140 g 7141 // |
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