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EBI DbfetchID AY924390; SV 1; linear; genomic RNA; STD; VRL; 7102 BP. XX AC AY924390; XX DT 02-DEC-2006 (Rel. 90, Created) DT 07-NOV-2007 (Rel. 93, Last updated, Version 2) XX DE Bear Canyon virus strain AV A0070039 Z protein and RNA-dependent RNA DE polymerase genes, complete cds. XX KW . XX OS Bear Canyon virus OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus; OC New world arenaviruses. XX RN [1] RP 1-7102 RX DOI; 10.1016/j.virol.2007.05.031 RX PUBMED; 17624390. RA Cajimat M.N., Milazzo M.L., Hess B.D., Rood M.P., Fulhorst C.F.; RT "Principal host relationships and evolutionary history of the North RT American arenaviruses"; RL Virology 367(2):235-243(2007). XX RN [2] RP 1-7102 RA Cajimat M.N.B., Fulhorst C.F.; RT ; RL Submitted (08-FEB-2005) to the EMBL/GenBank/DDBJ databases. RL Pathology, University of Texas Medical Branch, 301 University Blvd., RL Galveston, TX 77555-0609, USA XX FH Key Location/Qualifiers FH FT source 1..7102 FT /organism="Bear Canyon virus" FT /segment="L" FT /host="Peromyscus californicus" FT /strain="AV A0070039" FT /mol_type="genomic RNA" FT /country="USA:southern California" FT /db_xref="taxon:192848" FT misc_feature 1..60 FT /note="5' non-coding region" FT primer_bind 1..19 FT CDS 61..348 FT /codon_start=1 FT /product="Z protein" FT /note="zinc-binding protein" FT /db_xref="GOA:A0PJ23" FT /db_xref="InterPro:IPR003224" FT /db_xref="UniProtKB/Swiss-Prot:A0PJ23" FT /protein_id="AAX99343.1" FT /translation="MGLRYSREVKQRYGEKELEGRIPITLDMPQTLYGRYNCKSCWFAN FT KGLIKCSNHYLCLKCLTAMLSRSDYCGICGGILPKKLVFETTPSAPPYTP" FT misc_feature 349..421 FT /note="intergenic region; IR" FT CDS complement(422..7072) FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="RdRp" FT /db_xref="GOA:A0PJ24" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="InterPro:IPR014386" FT /db_xref="UniProtKB/Swiss-Prot:A0PJ24" FT /protein_id="AAX99344.1" FT /translation="MSEYLDELKELIRKWIPDEEMYIEQKTSFLSQVNLRSVVIEGLKL FT LSIIIEIDSCKKHGCVHNKNKTVNQILRDHRIVGPTLPDVVPDGYRVIGSTIILLEAFV FT RVSHESFEIKYKSDFEKLMQLSKDLSRCGLTLIPVVDGRSNYYTEHFPDWTIERMRWLI FT LKITNFLRDNGEEIEELEYSRLVYSLSNMENKNLGLESLKILKEEGLDYKAKLMSVMRD FT GVNSNMSASECRVEMAKIYDQFSFLRKNGLYKDVYCKTSRTEIINWLKDHKLILLSGET FT RTAMLDERQCGYCRNHMFRILASLIKNKRHYQSLTNPKKCGSIQSHKKLLSDCNKIKGL FT KVLNTRRFTLLCLDVIILNSLLELIDAGEIDNEFLVNNHFKSVNDRLVSIDLIIDRLNK FT KLMSKPNWIGSVKYKMKRTLEIHGLYYVSKWLKQVDIDSWYEFKMMREHSDKCVKPTLK FT YKKDAARKCGQPEFGSSTILDDEVFLEYLEALSTLSLGLVNSMKTSSAAKFLINDKSNY FT FGTVQCNECYFQDLDKSYNSLLIYQKTGERSRCYGLMFKSEQFENVYEVGESFYADPKR FT FFLPIMSSEVILKMCVEMLSWLDWLSEQELKAFKSKLYTLIINILTVPSKRVQVYLQGF FT RYLIMAFVNELHFKELQNKLKVQPLTISECYVFTLMDDLVHLLLTEAQEENMSKVFRFV FT LNLSYLCHLVTKETPDRLTDQIKCFEKFLEPKVDFNSVFVNLDSSPHLSGEVEEKFIKD FT LNRLFSKDLGVEDLKDPGISKELISLCASCFNCGLLPMSKVLKHDPQSPSFTSTALDIS FT SNKSVVVPKLDEVGETVTQYDYQSLLSSTVVDMAQSFKDKLKYKLDRKSIQFAIFKRLT FT NMVLKRKTDHDVKDDLDDELSEIVDDDTLRVINDVEANVSECLSKMGKISRAATVGGQN FT NLGRFEKIDTLKRLWDRESMNFILMETSLHEVKDFDPSIFPIEKYKSMCELVYDSKMKS FT EFFTDEVLKFCPLDLLVKNLATKCYLEEDFFECFKYILISAGFDNRVGRYDHRSRSRLG FT FKDEAILIKENSRISSRESNSEAISRRLDKSFFTNSSLRNLCFYSEESPTYRSTVSSSV FT GKLKFGLSYKEQVGSNRELYVGDLNTKLTSRLIEDYFESLTSECKFSCLNNDAEFERAL FT LDMKCVVRLSGLAVSMDHSKWGPYMSPAIFNILFSNLNLELNDGVFIDKAPIENLLNWH FT LHKIVEVPYNVIDAYLKGYTKRRLGLMDRSSTSITEDFIFNWFAKGVVPSHISSVLDMG FT QGILHNTSDYYGLLTEQFILQCLDFIFDIKSTAYTSSDDEILLSNSPSLKKVDEDSLDI FT NKCQEVLEFHNYLSSKFNKFVSPKTVAGSFASEFKSRFFIWSQEVPLLTKFVAAALHNV FT KAKSPHQLAETVDTILDQCIANGVSIEVVKAISRRTNKLITYSGHPKNPFLCVENTDLK FT DWVDGSRGYRLQRSVESLFNDDDLPLTIRNSCRSLFHRIRSGDIQEEFLINALQTSPDE FT CLAKMLRLSDVDESTIDKVLEFRWLNLRAHGDLRLVLRTKVMSGTRILDREEVPSLVKS FT VQSKLSKNFVRGAKKIITDAINKSAFQSSICSGFIGFCKSMGSKCVRDGNGSFQYIKHF FT LKSIILHSHCEVCKPEMSVFCRAALEELKPFSRPIFWDYFSLTFSNACELGNWVFSNVT FT IPKRTPTTVNPNFFWPVKPGSHTELEDKVNMNHVLYSIKRNFPDLFDEHIAPFLSDLNS FT LKISWIQRIKFLDLCVAMDMSSECLGIISHIMRRKREELYIVKQNELSVAHMRDSSPME FT AGYQLNSSEICHNFLCQLVFESMLHPVLLTTGQFKKYFWFGEVELLPNEADHDLGQLTQ FT FVMDCKTLNISRCMSLDDLDVGYVHSSILMGDIYVNFSSFLHLLDWENRRNYKTFDEII FT LCSREDTIPMEIDFTISHSRKSFKFKYERKTNYHIKSKVLVQKVDIEEAQNQGFDILEL FT EVHEIECFVSGSQGNHISLDGVGLIPLHPLFSGKEFLDVNKLLIKQDENFESTHSVFSK FT VKLNFSNHTKDLKNKYSYKLQGPEYNMNPLHLYRGQIMENNFVISRLDVQITSRSVFLA FT LEALESEDRIPFLISLHIYTRSNNKKENSCFIRMTQSDLCLLIDSYEKEFTEVLKSLSD FT WMDFGDFALCFSNNLNCIMIADPDGQFKLKGRQCRKVSSASAPLEID" FT misc_feature 7073..7102 FT /note="3' non-coding region" FT primer_bind complement(7084..7102) XX SQ Sequence 7102 BP; 2145 A; 1468 C; 1192 G; 2297 T; 0 other; cgcaccgtgg atcctaggct ttactggtca ttgcgcaaag tgaaatcttt tcaagtccca 60 atgggtctta gatattcaag agaggtcaaa caacggtatg gtgaaaaaga actagaaggt 120 agaataccca tcactttaga tatgcctcag actctgtatg ggagatacaa ttgcaaatct 180 tgttggtttg ccaacaaagg attgattaag tgcagcaatc attacttgtg tttgaagtgt 240 ctaacagcaa tgttgagcag gtcagattat tgtggcatct gtgggggcat cctcccaaag 300 aaactggtct ttgaaaccac gccatctgca ccaccctaca ccccatagaa tagggcccag 360 ggcgcacccc ccattggggg gtgcgccctc ggcccctgga ctccgtgggc cacggagtcc 420 attagtcaat ttcgaggggt gctgatgctg atgagacctt tctacactgt ctacctttga 480 gtttgaattg cccatctggg tctgcaatca tgatgcaatt taagttgttg ctgaagcata 540 gagcaaagtc accaaagtcc atccaatccg atagggattt tagtacttca gtgaactcct 600 tttcgtagga atcaatcaat agacagagat cagattgtgt catccttata aaacaagaat 660 tttctttctt gttatttgat cttgtgtaga tatgtaaaga aatcaggaaa ggaatcctgt 720 cttcactttc cagtgcttcc aaagcaagga agactgatct ggaagttatc tgaacatcaa 780 gccttgaaat tacaaagttg ttttccataa tttgccctct gtaaaggtgc aaagggttca 840 tattgtattc aggtccctgt aatttatagg agtacttatt tttcagatct tttgtgtggt 900 tactgaagtt cagtttgacc ttggaaaaga cggaatgggt ggattcaaaa ttttcatcct 960 gctttatgag gagtttgtta acatcaagga attccttgcc actaaaaaga gggtgtagtg 1020 gaatgagacc cactccatca agactgatgt ggttcccttg agatccacta acaaaacatt 1080 caatttcatg tacttcaagt tcaagtatgt caaacccctg attttgtgcc tcttctatgt 1140 cgaccttctg aaccagaacc ttgcttttaa tgtgatagtt agtttttctt tcatatttaa 1200 atttgaaact cttccttgaa tggcttatag tgaagtcaat ttccattgga atggtgtcct 1260 ctcttgagca caaaatgatc tcatcaaaag tcttataatt acgcctattt tcccaatcca 1320 gtaagtgtaa gaaactagaa aagttcacat aaatgtcacc cattagaatt gagctatgca 1380 catatccaac atctaaatca tcgagggaca tgcatctgga gatgttgagt gttttgcaat 1440 ccattacaaa ttgagttaac tgccccaggt catgatctgc ttcattaggc aggagttcta 1500 cttcaccgaa ccagaagtac tttttaaatt gacctgtggt taataaaaca ggatgaagca 1560 tagattcaaa aactaactga cagagaaaat tatgacaaat ttcagatgag tttaattgat 1620 accctgcttc cattggtgag gaatccctca tgtgtgcaac agacagttca ttttgcttca 1680 caatgtataa ttcttccctc ttccttctca ttatgtgcga aataatacct aaacactcac 1740 ttgacatatc catggcaaca cataaatcca agaactttat tctctgtatc caggaaattt 1800 tcagagagtt aaggtctgat aagaatggag caatgtgctc atcaaaaagg tcaggaaaat 1860 ttcttttgat tgagtagagc acatgattca tgtttacttt gtcctctaat tcagtgtggc 1920 tccctggttt tacaggccaa aagaagttgg gatttactgt tgttggagtt cttttaggaa 1980 tggtcacatt cgaaaaaacc caatttccca attcacaggc atttgaaaaa gtcaaagaaa 2040 aataatccca aaagatgggt cttgagaagg gtttaagctc ctctagtgct gctcgacaaa 2100 agacactcat ctctggtttg cagacttcac aatgcgaatg caagatgata gatttcaaaa 2160 aatgttttat gtactgaaaa ctaccgtttc catctctaac acatttagaa cccatactct 2220 tacaaaatcc tatgaagccg gagcaaatac tactctgaaa ggctgattta ttaatagcat 2280 cagtgattat cttctttgcc cctctgacaa agttttttga aagcttagac tgtaccgatt 2340 taaccagtga gggcacttct tccctatcta aaattcttgt gcctgacatg accttagtcc 2400 tcaagaccaa tcttaagtca ccatgagctc ttaagttcaa ccatctgaac tcaagcacct 2460 tatcaattgt actttcatca acatcactca acctcaacat ttttgctaga cattcatcag 2520 gtgaggtttg caatgcattg attagaaact cttcttgtat atcacctgat ctgattctat 2580 gaaacaaact tctacatgag tttctgattg tcaatgggag gtcatcatca ttaaacagtg 2640 actccactga cctctgaaga cggtaacccc ttgaaccatc cacccaatct ttcaggtctg 2700 tattttcaac acaaagaaag ggatttttag gatgtccact ataggtgata agtttgttag 2760 tccttcttga aattgcttta accacttcaa ttgacacacc gtttgctata cactgatcca 2820 aaattgtatc tactgtttca gccaactgat gtggagattt tgcttttaca ttatgaagtg 2880 ctgctgctac aaactttgtg agcagtggaa cttcctgaga ccagataaag aatctagatt 2940 taaactcact tgcaaaggag cctgccactg ttttggggct tacaaatttg ttgaatttag 3000 atgacaagta attatggaat tcaagtactt cttggcattt gtttatatct agtgagtctt 3060 catcaacttt ctttaaggaa ggagaattac ttaagaggat ctcatcatca cttgatgtgt 3120 aagctgttga cttgatgtca aagataaaat ccagacactg caagatgaac tgttctgtga 3180 gcagaccata ataatctgag gtattatgca aaattccctg tcccatgtcc agaacagaag 3240 aaatgtgcga aggaacaacc ccttttgcaa accagttaaa aatgaagtct tctgtgatgg 3300 atgtacttga cctgtccatt aagccaagcc ttctctttgt gtaacctttc aaataagcat 3360 caatcacatt ataaggtacc tcaacaatct tatgtaagtg ccaattcaaa aggttctcaa 3420 taggagcttt gtcaataaac accccgtcat ttaactcaag gttcagatta ctaaaaagta 3480 tgttgaagat tgcaggtgac atatatggcc cccacttgga atgatccatg ctcactgcta 3540 gacctgaaag ccttacgaca cacttcatat ctaaaagagc cctttcaaat tctgcatcat 3600 tattaagaca ggagaactta cactctgagg ttaaggattc aaagtaatct tcaatcagtc 3660 tactagtaag ctttgtgttt agatccccaa cataaagttc tctattgctt ccaacctgtt 3720 ctttgtaaga aagaccaaat ttcagtttcc caacactgga tgacacagtg gatctataag 3780 ttggggactc ttcagaatag aaacacaagt tcctcaagga agaattggta aaaaaactct 3840 tatcaagtct tctagaaatt gcttctgagt tactttccct tgaactaatt ctggagttct 3900 ctttaattaa tattgcctca tctttaaatc ctaatctaga tctacttctg tgatcatacc 3960 taccaactct attatcaaaa ccagcactta tgaggatata tttaaagcat tcaaaaaaat 4020 cttcctccaa atagcatttt gtggccaaat tcttcaccag caaatccagt ggacaaaact 4080 tcaaaacttc atcggtaaaa aattcagatt tcattttact atcataaact aactcgcaca 4140 ttgatttgta tttctcaatg gggaatattg aggggtcaaa atccttgacc tcatgtaggg 4200 aagtttccat caaaataaag ttcattgatt ctctatccca tagtctcttc aatgtatcaa 4260 ttttttcaaa cctacctaga ttgttctgac cacccacagt ggcagctctg gagatcttcc 4320 ccatcttgct tagacattca gagacattag cttctacatc atttatgact ctaagtgtat 4380 catcatctac aatttctgac agttcatcat caagatcatc ttttacatca tgatctgtct 4440 tcctctttaa gaccatgttt gttaagcgtt tgaaaattgc aaattggata ctttttctat 4500 caagtttata cttcagtttg tctttaaagg actgagccat atcaacaaca gtggaagaca 4560 gtaatgattg gtaatcatat tgtgttactg tttcacctac ttcatctaac ttcggaacga 4620 caacactttt gttactagaa atatccaagg ctgtactagt gaatgatggt gactgtgggt 4680 catgtttaag gactttgctc attggcagca aaccacagtt gaagcatgat gcacataatg 4740 aaatcagttc ttttgaaatt ccagggtctt tcaaatcctc aacacccaaa tctttggaga 4800 aaagtctatt gagatccttg ataaactttt cttccacctc tcctgacagg tgtggtgatg 4860 aatccaaatt aacaaaaaca gaattgaagt caacttttgg ctctaaaaac ttctcaaaac 4920 atttgatttg atcagtcaaa cgatctgggg tttcttttgt aactagatgg cataaatatg 4980 acaagtttaa aacaaatcta aacaccttag acatgttttc ctcttgggct tctgttaata 5040 agagatgaac taaatcatcc attagtgtaa acacataaca ctctgaaatt gtcaaaggtt 5100 ggacctttag cttattttgt aattccttaa agtgtagttc attaacaaac gccattatta 5160 agtatctaaa cccctgcagg taaacctgaa ctcgcttact tggaacagtt agtatattaa 5220 ttattagagt gtagagtttt gacttaaaag ccttcaactc ttgctcactc agccagtcta 5280 gccatgataa catctcaaca cacatcttta agatgacttc tgaactcatt atgggcaaga 5340 aaaatctttt aggatctgca taaaagcttt caccaacctc atatacattc tcaaattgtt 5400 cactcttgaa catcagcccg taacaccttg accgttcacc agttttctga taaattagca 5460 aactattata acttttatca agatcttgaa aataacactc attgcattga actgtaccaa 5520 agtaattgct cttatcattg attagaaatt ttgcagctga acttgttttc attgagttga 5580 ctaaaccaag actcaaggtt gatagcgcct caagatactc aaggaaaact tcatcatcta 5640 aaattgtgct actaccaaat tcaggttgac cacattttct tgcagcatct tttttgtatt 5700 tcaaggttgg ctttacacat ttatctgagt gctctcgcat catcttaaac tcataccaag 5760 aatcaatatc aacctgttta agccatttag atacatagta cagcccatgt atctcaagtg 5820 tcctcttcat tttgtatttg acactaccaa tccagtttgg cttactcatt agttttttat 5880 tcaatctgtc tattatcaaa tcaattgaca ccagtctatc attcacactt ttaaaatggt 5940 tgttaaccaa gaactcatta tcaatttccc ctgcatctat caattcgagt agactgttaa 6000 gaatgatgac atcaaggcat aggagtgtaa atcttcgagt atttagtact tttaaacctt 6060 taatcttgtt gcaatcagaa agtagtttct tatgactttg tatactgcca cattttttag 6120 ggttggtgag actttggtag tgtcttttat tcttgatcag acttgccaat attctaaaca 6180 tgtggtttct acagtaaccg cactgcctct cgtccagcat ggcagtcctg gtctcaccac 6240 taagcaggat taatttatga tccttcaacc agttgataat ttctgttcgt gatgtcttac 6300 aatacacatc tttatataat ccattttttc tcaagaaaga aaattgatca taaattttgg 6360 ccatttcaac tctgcattca gaggccgaca tgttggagtt gacaccatct ctcatcactg 6420 acatcaattt tgctttgtaa tctaagcctt cttctttcaa tatcttcaga gactcaaggc 6480 ccaagttttt attttccata tttgagagac tgtacacaag tctagagtat tctagttcct 6540 caatctcttc cccgttgtct cttaggaagt tagttatttt cagtatcaac catctcattc 6600 tctctattgt ccaatctgga aagtgttctg tataataatt tgatctacca tctacaacag 6660 ggatgagtgt tagaccacat ctactaaggt ctttagataa ctgcatcaac ttctcaaaat 6720 ctgatttgta cttgatctca aaggattcat gacttaccct aacaaaagcc tccaacaaga 6780 ttatcgttga tccaatcact ctgtaaccat caggcacaac atcgggtaga gtaggtccca 6840 caatcctatg atctctcaag atctgattca ctgttttgtt cttgttgtgc acgcatccat 6900 gcttcttgca ggaatctatc tctataataa ttgacaataa ttttaggcct tcaatgacta 6960 ctgatctgag attgacttga gacaagaaac tggtcttctg ttctatatac atctcttcgt 7020 caggtatcca tttcctaatg agttccttca attcatcaag gtattcactc atgataaagg 7080 aatgcctagg atccacggtg cg 7102 // |
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