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EBI DbfetchID AY786436; SV 1; linear; mRNA; STD; VRT; 3250 BP. XX AC AY786436; XX DT 11-NOV-2004 (Rel. 81, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 3) XX DE Danio rerio exostosin-like 3 (Extl3) mRNA, complete cds. XX KW . XX OS Danio rerio (zebrafish) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; OC Cyprinidae; Danio. XX RN [1] RP 1-3250 RX DOI; 10.1016/j.neuron.2004.11.029 RX PUBMED; 15603738. RA Lee J.-S., von der Hardt S., Rusch M.A., Stringer S.E., Stickney H.L., RA Talbot W.S., Geisler R., Nuesslein-Volhard C., Selleck S.B., Chien C.-B., RA Roehl H.H.; RT "Axon sorting in the optic tract requires HSPG synthesis by ext2 (dackel) RT and extl3 (boxer)"; RL Neuron 44(6):947-960(2004). XX RN [2] RP 1-3250 RA Lee J.-S., von der Hardt S., Roehl H.H., Chien C.-B.; RT ; RL Submitted (18-OCT-2004) to the EMBL/GenBank/DDBJ databases. RL Neurobiology & Anatomy, University of Utah, 20 North 1900 East, 401 MREB, RL Salt Lake City, UT 84132, USA XX DR Ensembl-Gn; ENSDARG00000026811; Danio_rerio. DR Ensembl-Tr; ENSDART00000039499; Danio_rerio. XX FH Key Location/Qualifiers FH FT source 1..3250 FT /organism="Danio rerio" FT /chromosome="20" FT /mol_type="mRNA" FT /db_xref="taxon:7955" FT gene 1..3250 FT /gene="Extl3" FT CDS 86..2839 FT /codon_start=1 FT /gene="Extl3" FT /product="exostosin-like 3" FT /note="glycosyltransferase; putative FT glucuronyl-galactosyl-proteoglycan FT 4-alpha-N-acetylglucosaminyltransferase; required for FT heparan sulfate biosynthesis in larvae; (Extl3)/Boxer; FT mutations results in defects in jaw and pectoral fin FT formation as well as sorting of retinal axons in the optic FT tract" FT /db_xref="GOA:Q5U7D2" FT /db_xref="InterPro:IPR015338" FT /db_xref="UniProtKB/TrEMBL:Q5U7D2" FT /db_xref="ZFIN:ZDB-GENE-041124-2" FT /protein_id="AAV51343.1" FT /translation="MQRNGGIVGNGGQPWVLRRVRLTWLSFMLFFILVFFPLIAHYYLT FT TIDEAGGPDKRIFGPRPGGELCEAKHVQDLCRIRESVSEELLQLEAKRQELNGEIARLN FT LRIEACKRSIDSAKQDLLQLKNVISQTEHSYKELMAQNQPKLSLPVRLLPDKDDPGYPP FT PKSPQSCRLHSCFDYARCPLTSGFPVYVYDTGSYPWGEKLDPLVKQAFASSVKSSVYVT FT DNPNIACLYIALVGEIQESPSSPLASPSDLEKQLKALPYWRSDGHNHLLVHLSINSLTQ FT NFLYNVSTGRAAVAQSTFFERQYREGFDLVVSPLVHALSEPNFLEVPPQVPVKRKYLFT FT FQGEKVESLRSSLLEAPPQSFEEEMEGDPPADYDDRIIGTLKAVQDSHLDQVLVEFTCK FT NQAKPSLPTEWALCGKREDRLEVLKVSTFALVISPGDGQLVASAGCSMRLFEALEVGAI FT PVVLGDHSKLPYHHLIRWSEAVIMVPKPRITELHFLLRSISDNDLLAMRRQGRFLWETY FT FSTSESIFNTILASVRTSIQIPAAPIREEPAQEIPHKAGKLAGTDANLADNGDLDLGPV FT EVEPPYASPRFLRNFTYTAADVYRTWNRAPGPFHLFPHTPLDPVLPSEAKFLGSGTGFR FT PIGGGSGGSGKEFQAALGGNVPREQFTVVMLTYEREEVLMNSLERLNGLPYLNKVVVVW FT NSPKPPSDDLLWPDIGLPIVVVRTGKNSLNNRFLPWDAIETEAILSIDDDAHLRHDEIM FT FGFRVWREARDRIVGFPGRFHAWDLNHQSWLYNSNYSCELSMVLTGAAFFHKYYAYLYS FT YVMPRAIRDMVDEYINCEDIAMNFLVSHITRKPPIKVTSRWTFRCPGCPQALSHDDSHF FT HERHKCINFFVKVYGYMPLLYTQFRVDSVLFKTRLPHDKTKCFKFI" XX SQ Sequence 3250 BP; 817 A; 795 C; 770 G; 868 T; 0 other; tagagatgag gttgcattat ggcagctgaa tctcctaaac agctgcattc acgtatttgg 60 ttcggaggag agtgatagtt gtacaatgca gcgaaacgga ggcatcgttg ggaacggtgg 120 ccagccatgg gtactgaggc gagtacggct cacctggctc agtttcatgc tcttcttcat 180 cctggtcttc ttccctctca ttgcacatta ctacctcacc acaatagatg aagcaggagg 240 accagataag cgaatctttg gcccaagacc tggaggagag ctgtgtgaag cgaagcatgt 300 gcaagatctt tgtcgtatac gggaatctgt cagtgaagag ctacttcagc ttgaggcaaa 360 gcgtcaagag cttaatggcg agatagcccg acttaaccta cgcatcgagg cctgcaaacg 420 tagtatcgac agtgccaaac aggacttgct acaactcaaa aatgtcatca gccagactga 480 gcactcttac aaggaactta tggcacaaaa ccagccaaaa ttgtcattgc cggttaggct 540 tttaccagac aaggatgatc ctggttatcc tcctccaaag tcaccccaaa gctgtagatt 600 gcattcttgt tttgattacg ctagatgtcc ccttacatcg ggcttccctg tctatgttta 660 tgacacagga tcataccctt ggggtgaaaa gttggaccct cttgtcaaac aagcttttgc 720 atcatccgtc aaaagcagtg tatatgtgac cgataatcca aacattgctt gtctgtacat 780 agctcttgtt ggggaaatac aagaatcacc ctcctctccg cttgcttcac cttcagacct 840 tgaaaaacag ctcaaggctt tgccgtattg gaggtcggat ggtcacaacc acctgcttgt 900 acacctttct ataaattctc tgacacagaa cttcctctat aatgtgagca cgggacgagc 960 agcagtagca cagtctacct tttttgaacg acagtataga gaaggttttg acttggtggt 1020 gtctccacta gtccatgctc tgtctgagcc taacttcttg gaggttcctc cgcaagtccc 1080 agttaagagg aagtacctct ttacctttca gggagaaaaa gttgagtctt tgagaagcag 1140 tttgcttgaa gcccctccac aatcctttga ggaggaaatg gaaggggatc caccagcaga 1200 ctatgatgat cgaatcattg gcacacttaa agctgtacag gacagtcacc tagaccaggt 1260 tcttgtggag tttacttgca agaatcaagc caagccaagt ttaccaacag agtgggcatt 1320 gtgtggcaag cgtgaggatc gtttagaggt actgaaagtc tctacatttg ccttggtaat 1380 atctccaggt gatggacagc tggtggcatc tgctggctgt agcatgagac tttttgaggc 1440 tttggaagtt ggggcaatac ctgtggtact tggtgaccac tcaaagttac cctaccatca 1500 tctcatacgc tggagtgaag cagtcataat ggtgccaaaa ccccgcatta cggaactaca 1560 ctttctgttg cgtagcatct cagacaatga tcttcttgct atgcggcgac aaggacggtt 1620 tctttgggaa acatatttct ccacttcaga aagcatcttc aataccattt tggctagtgt 1680 acgtaccagc atccagatcc cagcagcacc catacgtgaa gaacctgctc aggagattcc 1740 ccacaaagct ggaaagttgg ccgggaccga tgctaacctg gccgacaatg gtgacttaga 1800 tcttgggcct gttgaagtag agccccctta cgcttcgccc cgtttcttgc gtaacttcac 1860 ctacactgct gctgatgtct accgcacatg gaatcgtgca cctggccctt tccatctatt 1920 cccacacact cccctggacc ctgtacttcc ctcagaggcc aagtttttgg ggtcaggaac 1980 tggttttcgc ccaatcggtg gaggttctgg tggatctggt aaagagttcc aggccgctct 2040 tggtggtaac gtcccacggg agcagttcac agtggtcatg ctcacttatg aacgagagga 2100 ggttcttatg aactcactgg agagactaaa tggccttcct tatctcaaca aagtggtagt 2160 ggtgtggaat tcccccaaac caccatcaga tgatctcctt tggccagata ttggtctgcc 2220 tattgtggtg gtacgcacag ggaagaacag cttaaacaat cgcttccttc cctgggatgc 2280 aatcgagact gaggctattt tgtctattga cgatgatgcc catcttcgac atgatgaaat 2340 catgtttggc ttcagagtgt ggagggaggc gagagaccgg atcgtgggct ttccgggaag 2400 gtttcacgcc tgggatttaa atcaccaatc ttggctctac aactccaact actcctgcga 2460 gctctccatg gtgctgacgg gtgcggcctt cttccacaag tattacgcgt atctctattc 2520 ctacgtcatg cctcgagcca tccgagacat ggtggatgag tacatcaact gtgaggatat 2580 cgccatgaac ttcctggtgt cgcatatcac tcgcaaaccc ccaatcaagg tgacgtcccg 2640 ttggaccttc cgctgtcccg gctgcccaca ggctctatcg catgacgatt cgcacttcca 2700 cgagcgtcac aagtgcatca acttcttcgt aaaagtttac ggatacatgc cgctgttata 2760 cactcagttc agagtggact ctgtactctt caagactcga ctgccccacg acaaaaccaa 2820 atgttttaaa ttcatttagc gggagcgtgg ggacatccgg cggacgtggg acgatctctc 2880 tctctgggag cgggaaggga attaaagctt tcttgtaaat actggaggat tttactttga 2940 actcgtcttc cttgaagcca agggagaact attatgaaac gaacgattac cgtcaggcgt 3000 tcttgaacat gcgttattca tcagcaacca ctgcaggctt gatttgcacc acttttcatg 3060 ggtcgcctga gacaaggacg ctttaatgga catccaaccg atgttatact gacggaacgt 3120 gcaaaatgat gaactaacgg aggctgtttt taaaggacgt atctgagaat aacggagaaa 3180 attttgtcat cgctctaaat gcttttattt tttactttct gtgcatatat tctctgcttt 3240 gacgctctga 3250 // |
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