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EBI DbfetchID AY740739; SV 1; linear; genomic RNA; STD; VRL; 2591 BP. XX AC AY740739; XX DT 01-SEP-2005 (Rel. 85, Created) DT 05-APR-2006 (Rel. 87, Last updated, Version 2) XX DE Human rotavirus G3 strain B4106 segment 3, complete sequence. XX KW . XX OS Rotavirus G3 OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Rotavirus; Rotavirus A. XX RN [1] RP 1-2591 RX DOI; 10.1128/JVI.80.8.3801-3810.2006 RX PUBMED; 16571797. RA Matthijnssens J., Rahman M., Martella V., Xuelei Y., De Vos S., RA De Leener K., Ciarlet M., Buonavoglia C., Van Ranst M.; RT "Full genomic analysis of human rotavirus strain B4106 and lapine rotavirus RT strain 30/96 provides evidence for interspecies transmission"; RL J. Virol. 80(8):3801-3810(2006). XX RN [2] RP 1-2591 RA Matthijnssens J., Rahman M., De Vos S., Van Ranst M.; RT ; RL Submitted (02-SEP-2004) to the EMBL/GenBank/DDBJ databases. RL Microbiology and Immunology, Laboratory of Clinical and Epidemiological RL Virology, Rega Institute for Medical Research, University of Leuven, RL Minderbroedersstraat 10, Leuven 3000, Belgium XX FH Key Location/Qualifiers FH FT source 1..2591 FT /organism="Rotavirus G3" FT /segment="3" FT /strain="B4106" FT /serotype="P[14], G3" FT /mol_type="genomic RNA" FT /note="complete viral genome is comprised of GenBank FT Accession Numbers AY740731-AY740741" FT /db_xref="taxon:73036" FT gene 50..2557 FT /gene="VP3" FT CDS 50..2557 FT /codon_start=1 FT /gene="VP3" FT /product="VP3" FT /db_xref="GOA:Q3ZK57" FT /db_xref="InterPro:IPR009697" FT /db_xref="InterPro:IPR011181" FT /db_xref="UniProtKB/Swiss-Prot:Q3ZK57" FT /protein_id="AAU43797.1" FT /translation="MKVLALRHSVAQVYADTQVYTHDDTKDSYENAFLISNLTTHNILY FT FNYSVKTLEILNKSGIAAIEIQSLEELFTLIRCNFTYDYENNVVYLHDYSYYTNNEIRT FT DQHWITKTNIEEYLLPGWKLTYVGYNGNDTRGHYNFSFTCQNAATDDDIIIEYIYSEAL FT DFQNFMLKKIKERMTTSLPIARLSNRVFRDKLFPLLVKKHKRVINVGPRNESMFTFLNF FT PSIRQFSNGPYLVKNTIKLKQERWLGKRVSQFDIGQYKNMMNVITTIYHYYNLYQEKPI FT IYMVGSAPSYWIYDVRQYSEFLFETWDPLDTPYSSIHHKELFFEKDIGKLKDNSILYID FT IRTDRGNVDWKEWRKIVELQTINNLDLAYKYLATGKSKVCCVKLTAMDLELPVSAKLLH FT HPTTEIRSEFYLLLDIWDVNNVKRFIPKGVLYSFINNVITDNVFIQSPFKIRTSMSDYI FT VALYALSNDFNNRADIINLINNQKQSLITVRINNTFKDEPKVGFKNIYDWTFLPTDFDT FT TNAIVTSYDGCLGMFGLSISLASKPTGNNHLFILNGTDKYYKLDQFANHTGISRRSHQI FT RFSESATSYSGYIFRDLSNNNFNLIGTNVENSVSGHVYNALIYYRYNYSFDLKRWIYLH FT SIEKVDIEGGKYYEHAPIELIYACRSAKEFALLQDDLTVLRYANEIENYINKVYSITYA FT DDPNYFIGIKFDNIPYTYDVKVPHLTFGVLYISDNMIPDVVKIMKSMKQELFGMDVTTS FT YTYMLSDGIYVANVSGVLATYFKMYNLFYKNQITFGQSRMFIPHITLSFRNNKTVRIET FT TKLRIKSIYLRKIRGDTMFDMSE" XX SQ Sequence 2591 BP; 960 A; 401 C; 428 G; 802 T; 0 other; ggctattaaa gcagtactag tagtgtgttt tacctctgat ggtgtaaaca tgaaagtact 60 agctttaaga cacagtgtgg ctcaggtata tgcagacact caggtctaca ctcatgatga 120 cacaaaggat agctatgaaa atgcatttct catttctaat cttacaacgc ataatatcct 180 atattttaat tacagtgtaa aaacgcttga aatattaaat aagtcaggaa ttgcggctat 240 tgagattcag tctcttgaag aattgttcac cttaatcaga tgcaatttca cgtatgatta 300 tgaaaataat gtagtttatt tgcatgatta ctcttattat actaacaacg aaatacgaac 360 tgatcaacat tggattacta aaacgaatat tgaagaatat ctactaccgg gttggaagct 420 aacgtacgta ggatacaatg gaaatgacac acgagggcat tataattttt catttacatg 480 tcaaaacgca gctactgatg atgatataat aatagagtac atttactctg aggcattaga 540 ttttcagaac tttatgttaa agaaaattaa agaaagaatg actacatctt taccaatagc 600 acgactatcg aacagagttt ttagagacaa attatttcct ttattagtca aaaaacataa 660 acgcgtgata aatgttggac ctagaaatga gtcaatgttt acatttctga attttccatc 720 tattagacaa ttctcaaatg gtccgtattt agttaaaaac actattaagt tgaaacaaga 780 aagatggtta ggaaaaagag tatctcaatt tgatatcgga caatacaaaa acatgatgaa 840 cgtcatcaca actatatatc attattataa tctataccaa gaaaaaccaa ttatatacat 900 ggtaggttcg gctccttcat actggatcta cgacgtaagg caatattctg aatttctatt 960 tgaaacatgg gacccgctag atactccata ttcatccata caccataaag aactgttctt 1020 cgaaaaggac ataggcaaac taaaagataa ctccatattg tatattgata ttagaaccga 1080 tcggggtaac gttgattgga aggaatggag aaaaatagtc gaactacaaa ctatcaataa 1140 tctcgatctt gcgtataaat atttagctac cggcaaatca aaagtgtgct gtgttaaatt 1200 gaccgccatg gatctagagc ttccagtttc cgcaaagtta ctacaccacc caacgacgga 1260 gataaggtca gaattttatt tgctgttaga tatctgggat gtaaacaacg tcaaaagatt 1320 tattccaaaa ggagtgttat attcatttat aaataacgtt attactgaca atgtatttat 1380 acaatcacca tttaagatta gaacgtctat gagtgattat atagtagcct tatacgcact 1440 atcgaacgat tttaataata gagcagatat tattaattta attaataatc aaaagcagtc 1500 actcattacc gttagaatca ataacacatt taaagatgaa ccaaaagtag gatttaaaaa 1560 catatatgat tggacttttt taccaaccga cttcgataca actaatgcta tagtaacttc 1620 atatgatggg tgcttgggta tgtttggact atctatatct ttagcctcaa aaccaacagg 1680 aaataatcac ttgttcatct tgaatggaac agacaaatat tataaattgg atcaattcgc 1740 aaaccataca ggtatttcaa gaagatcaca tcagattaga ttttcagagt ctgcaacatc 1800 atattcagga tatatattta gggatctgtc taataacaac tttaatctaa ttggaactaa 1860 tgtagaaaat tctgtttcgg gtcatgtata taacgcacta atttattata gatacaatta 1920 ttcttttgac ttgaagagat ggatatatct gcattcaata gaaaaggtcg atattgaagg 1980 tggaaaatat tacgaacacg ctcccataga gttaatatat gcttgcagat cagcgaaaga 2040 atttgccttg ttgcaagatg atttgacagt attgcgttat gctaatgaaa tcgagaatta 2100 tattaataaa gtatatagta taacatacgc tgacgatcca aactatttta taggcattaa 2160 attcgacaat attccttaca cgtatgacgt aaaagttcca catttgacat ttggtgtact 2220 atatatttca gataacatga ttccagatgt agtaaaaatt atgaaaagta tgaaacagga 2280 gctatttgga atggacgtta cgacaagcta tacttacatg ctatctgatg gaatatacgt 2340 agcaaatgtt agtggagttt tagcaacata tttcaaaatg tataatttat tttacaagaa 2400 ccagattact ttcggtcaat caagaatgtt tataccgcat ataacactaa gctttaggaa 2460 taataagaca gtaagaatag aaactactaa attaagaatt aaatcaatat acttaagaaa 2520 aattagaggg gacactatgt ttgatatgtc tgagtgagct aaaaacttaa cacactagtc 2580 acgatgtgac c 2591 // |
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