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EBI DbfetchID AY740735; SV 1; linear; genomic RNA; STD; VRL; 1591 BP. XX AC AY740735; XX DT 01-SEP-2005 (Rel. 85, Created) DT 05-APR-2006 (Rel. 87, Last updated, Version 2) XX DE Human rotavirus G3 strain B4106 segment 5, complete sequence. XX KW . XX OS Rotavirus G3 OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Rotavirus; Rotavirus A. XX RN [1] RP 1-1591 RX DOI; 10.1128/JVI.80.8.3801-3810.2006 RX PUBMED; 16571797. RA Matthijnssens J., Rahman M., Martella V., Xuelei Y., De Vos S., RA De Leener K., Ciarlet M., Buonavoglia C., Van Ranst M.; RT "Full genomic analysis of human rotavirus strain B4106 and lapine rotavirus RT strain 30/96 provides evidence for interspecies transmission"; RL J. Virol. 80(8):3801-3810(2006). XX RN [2] RP 1-1591 RA Matthijnssens J., Rahman M., De Vos S., Van Ranst M.; RT ; RL Submitted (02-SEP-2004) to the EMBL/GenBank/DDBJ databases. RL Microbiology and Immunology, Laboratory of Clinical and Epidemiological RL Virology, Rega Institute for Medical Research, University of Leuven, RL Minderbroedersstraat 10, Leuven 3000, Belgium XX FH Key Location/Qualifiers FH FT source 1..1591 FT /organism="Rotavirus G3" FT /segment="5" FT /strain="B4106" FT /serotype="P[14], G3" FT /mol_type="genomic RNA" FT /note="complete viral genome is comprised of GenBank FT Accession Numbers AY740731-AY740741" FT /db_xref="taxon:73036" FT gene 31..1509 FT /gene="NSP1" FT CDS 31..1509 FT /codon_start=1 FT /gene="NSP1" FT /product="NSP1" FT /db_xref="GOA:Q3ZK61" FT /db_xref="InterPro:IPR002148" FT /db_xref="UniProtKB/Swiss-Prot:Q3ZK61" FT /protein_id="AAU43793.1" FT /translation="MATFKDACFHYRRITKLNRELLRIGANSVWTPVSTNKIKGWCVEC FT CQLTELTFCHGCSLAHVCQWCIQNKRCFLDNEPHLLKLRTFESPITKEKLQCIINLYNM FT LFPINSSIINKFRKTVKQRKCRNEIDRSWYNQLLLPITLNAAVFKFHSREVYIFGFYEG FT SSSCVNLPYRLVNCIDLYDKLLLDQINFDRMSSLPANLQSIYANKYFKLSRLPSMKLKQ FT IYYSDFSKQNLVNKYKSKSRMVLRNLTEFTWDSQLNLHYDLLNNKDKILAALSTSSLKQ FT FETHDLNLGRIKADVFELGRHCKPNYISSNHWQPASTISQCKWCNVKYAFRNMDWKMES FT MYNELLSFIQSCYKSNVNVGHCSSIERVYPLVKDILWHSITKYLDQTIEKLFNAMNPVQ FT VNDQKVISFHWQIDIALYTHIKMILKTEALPFTFTLHQFNSIIKGIVNQWCNVSELDDL FT PLCTEQTDTLVRLEEEGKLAEEYELLISDSEDDD" XX SQ Sequence 1591 BP; 557 A; 260 C; 280 G; 494 T; 0 other; ggcttttttt tgaaaagtct tgtgttagcc atggcaactt tcaaagatgc ttgctttcat 60 tacagaagaa tcacaaaact gaatagagaa ctactgagaa taggagcaaa ttcagtgtgg 120 actccagttt ctacgaataa aattaagggg tggtgtgttg aatgctgtca acttactgaa 180 ttaacattct gtcatggatg ctcattagct catgtatgtc agtggtgtat acaaaacaaa 240 cgttgttttt tggataatga accacatctt ctgaagttac gaacttttga atcaccaata 300 acaaaggaaa aattacaatg tattattaat ttgtataata tgctctttcc aattaactca 360 agtatcataa ataaattcag gaagacagtt aaacagagga aatgtagaaa tgaaattgat 420 agatcatggt ataatcaatt gctacttcca atcactctaa atgctgcagt gtttaagttt 480 cattcaaggg aagtttacat ttttgggttt tacgaaggat cttcatcgtg cgtaaatttg 540 ccgtatagac ttgtaaattg cattgatttg tacgataaat tgttactaga tcaaataaat 600 tttgatagaa tgagctccct tccagcaaat ttgcaatcca tttatgcgaa taagtatttc 660 aagttgagta gacttccttc aatgaaattg aaacaaattt actactcaga tttttctaag 720 caaaatctag ttaataaata caagtctaaa agtcgcatgg ttctcagaaa ccttaccgaa 780 tttacttggg attcccaact caacttgcat tatgacctac ttaataataa agataaaata 840 ctcgctgcgt tatcaacatc atcactaaag caattcgaaa cgcacgactt aaatctggga 900 agaataaaag ctgacgtttt tgaactcgga cgtcattgca aaccaaatta tatttcatca 960 aatcattggc agccagcgtc aacgatttct cagtgtaagt ggtgtaatgt aaaatatgca 1020 tttagaaata tggattggaa aatggaatca atgtataatg aacttctgag cttcatacag 1080 tcgtgttata aaagtaatgt taacgtagga cattgcagtt caattgaacg cgtttatcca 1140 ttggtaaaag atatattatg gcactcaatt actaaatacc ttgatcaaac cattgaaaag 1200 ttgttcaatg caatgaaccc agtacaagtg aatgatcaga aagtaattag ttttcattgg 1260 cagatagaca ttgcactata tacgcatatc aagatgatat taaaaactga agctcttcca 1320 ttcacattta cgctacatca gttcaattct ataattaagg gaattgtgaa tcaatggtgc 1380 aacgtgagtg aattggatga tttacctcta tgtactgaac agaccgacac attggttaga 1440 ttagaagaag agggtaaact agctgaagaa tatgagcttc tgatctcaga ttctgaagat 1500 gacgattaat acttaaataa gctaaactca gtttttgcca tcacaagacc ttctggacta 1560 gagtagcgcc tagccagcaa aaactgtgac c 1591 // |
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