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EBI DbfetchID AY694184; SV 2; linear; genomic RNA; STD; VRL; 7429 BP. XX AC AY694184; XX DT 05-SEP-2004 (Rel. 81, Created) DT 02-FEB-2007 (Rel. 90, Last updated, Version 3) XX DE Sapovirus Hu/Dresden/pJG-Sap01/DE, complete genome. XX KW . XX OS Sapovirus Hu/Dresden/pJG-Sap01/DE OC Viruses; ssRNA positive-strand viruses, no DNA stage; Caliciviridae; OC Sapovirus. XX RN [1] RP 1-7429 RX DOI; 10.1128/JVI.01462-06 RX PUBMED; 17121797. RA Fullerton S.W., Blaschke M., Coutard B., Gebhardt J., Gorbalenya A., RA Canard B., Tucker P.A., Rohayem J.; RT "Structural and functional characterization of sapovirus RNA-dependent RNA RT polymerase"; RL J. Virol. 81(4):1858-1871(2007). XX RN [2] RP 1-7429 RA Gebhardt J., Rethwilm A., Rohayem J.; RT "Generation and characterization of a full-length sapovirus clone"; RL Unpublished. XX RN [3] RP 1-7429 RA Gebhardt J., Rethwilm A., Rohayem J.; RT ; RL Submitted (23-JUL-2004) to the EMBL/GenBank/DDBJ databases. RL The Calicilab, Institute of Virology, Technical University of Dresden, RL Fetscherstrasse 74, Dresden 01309, Germany XX CC On Sep 7, 2004 this sequence version replaced gi:51703248. XX FH Key Location/Qualifiers FH FT source 1..7429 FT /organism="Sapovirus Hu/Dresden/pJG-Sap01/DE" FT /strain="Hu/Dresden/pJG-Sap01/DE" FT /mol_type="genomic RNA" FT /clone="pJG-Sap01" FT /db_xref="taxon:291175" FT CDS 13..6855 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF1" FT /db_xref="GOA:Q672I1" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:Q672I1" FT /protein_id="AAU09265.2" FT /translation="MVSKPFKPIVLNATFEWQVFKRCYLRVAPREAFCENLSELHHYFA FT RRVNAWLKHATRTLPDGYTFVEEGLLDMFGTKAPDSVQEGTLFRELFGVDQTEQFPLSL FT ADLAKLQGELVDATRTPGHALRQKYTMTTIQDLINKITKVVPVQATLTEMHARRQFERE FT RADLFHELPLVDEDAVSQPKTYFYTMWRQVVKKGKAYFCPLVKTSAWRTKISAITEPIK FT DFLIAFCQAVQQEMGVNPQYLQLAWLQKLKPTTLTIILQQHKYTVSGWLATMTALVEVY FT SNLFDDLRKSSVAIVSSIGAFFDICKDFVSQVVELVKTTFTAQGPTDLGWAAVLAGAAM FT ILLKMSGCPGVIGMWTKVLKICGGITTITAAARGVRWLKDLYEEAEGRRLAKMYMARGA FT ALIELAASREVTGIDELKGLLDCFTILIEEGTELIHKFGTSPLAGLVRTYVSELETQAN FT NIRSTIKLDTPRRVPVVIILTGAPGIGKTRLAQYVGQRFGKTSNFSVAVDHHDGYTGNT FT VCIWDEFDVDSKGAFVETMIGIANTAPFPLNCDRVENKGRVFTSDYVICTSNYPTSVIP FT DNPRAAAFYRRVLTVDVSAPDLEEWKKRNPGKRPTPDLYQDDFSHLKLMLRPYLGYNPD FT GDTLEGPRVAPTQISIAGLITLMERRFKEQAGPLQNLWLQVPKTLVEQSTNMVKAFMYA FT NRAVCDVIPNPATRDIAETALTKIFVCGTAPPPEFVGKHIVITGIEVGDASIANSLLSM FT FTTTTRLSAAAQREYMYRVWSPLIHIQDRSINTQNLPYINRVIPVTSHWDFLRGLRHHL FT GFTSIPGMWKAFQGWRTSQGIVDFVAHHMADVTFPSNPECTIFRTPDADVVFYTFGSYV FT CFATPARVPYVGTPPTTIHSNTPRCMTWGETIALLCEVVAEFVLHFGPVILSAANIAYL FT MTRGSRTEEAKGKTKHGRGMRHGHRAGVSLSDDEYDEWRDLMRDWRRDMSVNDFLMLRE FT RSALGVDDEDEARYRAWLEIRAMRMAGGAYTHATIIGRGGVRDEIIRTAPRRAPTRPQQ FT HYEEEAPTAIVEFTQGGDHIGYGVHIGNGNVITVTHVASTSDEVNGSAFKITRTVGETT FT WVQGPFSQLPHMQIGSGSPVYFTTRLHPVFTISEGTFETPNITVNGFHVRIMNGYPTKK FT GDCGLPYFNSNRQLVALHAGTDTQGETKVAQRVVKEVTTQDEFQWKGLPVVKSGLDVGG FT MPTGTRYHRSPAWPEEQPGETHAPAPFGAGDKRYTFSQTEMLVNGLKPYTEPTAGVPPQ FT LLSRAVTHVRSYIETIIGTHRSPVLTYHQACELLERTTSCGPFVQGLKGDYWDEEQQQY FT TGVLANHLEQAWDKANKGIAPRNAYKLALKDELRPIEKNKAGKRRLLWGCDAATTLIAT FT AAFKAVATRLQVVTPMTPVAVGINMDSVQMQVMNDSLKGGVLYCLDYSKWDSTQNPAVT FT AASLAILERFAEPHPIVSCAIEALSSPAEGYVNDIKFVTRGGLPSGMPFTSVVNSINHM FT IYVAAAILQAYESHNVPYTGNVFQVETVHTYGDDCMYSVCPATASIFHAVLANLTSYGL FT KPTAADKSDAIKPTNTPVFLKRTFTQTPHGVRALLDITSITRQFYWLKANRTSDPSSPP FT AFDRQARSAQLENALAYASQHGPVVFDTVRQIAIKTAQGEGLVLVNTNYDQALATYNAW FT FIGGTVPDPVGHTEGTHKIVFEMEGNGSNPEPKQSNNPMVVDPPGTTGPTTSHVVVANP FT EQPNGAAQRLELAVATGAIQSNVPEAIRNCFAVFRTFAWNDRMPTGTFLGSISLHPNIN FT PYTAHLSGMWAGWGGSFEVRLSISGSGVFAGRIIASVIPPGVDPSSIRDPGVLPHAFVD FT ARITEPVSFMIPDVRAVDYHRMDGAEPTCSLGFWVYQPLLNPFSTTAVSTCWVSVETKP FT GGDFDFCLLRPPGQQMENGVSPEGLLPRRLGYSRGNRVGGLVVGMVLVAEHKQVNRHFN FT SNSVTFGWSTAPVNPMAAEIVTNQAHSTSRHAWLSIGAQNKGPLFPGIPNHFPDSCAST FT IVGAMDTSLGGRPSTGVCGPAISFQNNGDVYENDTPSVMFATYDPLTSGTGVALTNSIN FT PASLALVRISNNDFDTSGFANDKNVVVQMSWEMYTGTNQIRGQVTPMSGTNYTFTSTGA FT NTLVLWQERMLSYDGHQAILYSSQLERTAEYFQNDIVNIPENSMAVFNVETNSASFQIG FT IRPDGYMVTGGSIGINVPLEPETRFQYVGILPLSAALSGPSGNMGRARRVFQ" FT CDS 5180..5665 FT /codon_start=1 FT /product="unknown" FT /db_xref="InterPro:IPR009949" FT /db_xref="UniProtKB/Swiss-Prot:Q672I0" FT /protein_id="AAU09266.1" FT /translation="MAPTQSQSRATTRWSLTRLAQQVRPHPTLLLLIRSNPMGPHSAWS FT WLLPLVQSNPMSLRQYATALQSFVLLLGTTGCPRELFLDLYRFIPTLTRTLLTSLGCGP FT GGAVVLRSGYRSLVLACSLGVSLLLSYHQGLIPRPSGTQACCLTLSLMLASLSQFLS" FT CDS 6852..7349 FT /codon_start=1 FT /product="unknown" FT /note="ORF2" FT /db_xref="GOA:Q672H9" FT /db_xref="InterPro:IPR008437" FT /db_xref="UniProtKB/Swiss-Prot:Q672H9" FT /protein_id="AAU09267.1" FT /translation="MSWLVGALQTFGSLADVAGTVSNIVYQQRQAAQLEKQNELMETWM FT NKQEALQKSQMELTRDLSINGPAARVQSALDAGFDEVSARRIAGSGERVIWGNLDRPIM FT HAGTMDSIRQTRHLDSLSHSLATFKNGTPFGKPAPPTAKSGRPQATTAQITIGHNPGST FT SV" XX SQ Sequence 7429 BP; 1904 A; 1893 C; 1869 G; 1763 T; 0 other; gtgattggtt agatggtttc caagccattc aagccaatag ttctcaatgc cactttcgag 60 tggcaggtct tcaagcggtg ctacctcagg gtagcgccac gtgaagcatt ttgcgagaac 120 ttgagtgaac ttcatcacta ctttgccagg cgtgtgaacg cctggctcaa gcatgccaca 180 aggaccctcc cagacggata tacgttcgtc gaggagggtc tccttgacat gtttggtaca 240 aaggcccctg acagtgttca agaaggtaca ctgttccggg agctgttcgg ggttgaccaa 300 accgagcagt tccctttgtc cctcgcagac ctggccaagt tgcaagggga acttgttgac 360 gcaactcgca ccccaggaca tgcattgcgt caaaagtata caatgaccac tatacaggac 420 ttgatcaaca agatcaccaa ggttgtgcca gtgcaggcca cgctcactga gatgcacgca 480 cgtaggcaat tcgagcgtga gcgagccgac ctgtttcacg aacttccatt ggttgatgag 540 gatgctgttt cacaacctaa aacttatttt tacaccatgt ggcgtcaagt tgtgaagaaa 600 ggtaaagcgt acttctgccc ccttgttaag acaagtgcat ggcgcactaa gatcagtgcc 660 ataacagaac ccattaagga cttcttaatt gcgttttgcc aggcagtgca acaagaaatg 720 ggtgttaacc cgcagtactt acaactcgcc tggttgcaaa aacttaaacc caccactttg 780 accatcattc ttcaacaaca caagtacacc gtctcagggt ggctggccac catgacagca 840 cttgtggaag tgtactcaaa tttgtttgac gacttgcgca aatcatcagt tgctattgtg 900 tcaagcatag gagctttctt tgacatttgc aaagactttg tgtcacaagt cgtggaactg 960 gtcaaaacaa cgttcaccgc tcaaggcccg acagacttgg ggtgggcagc agtgctggca 1020 ggggctgcaa tgattctgct aaaaatgtct gggtgcccag gcgtcatcgg catgtggaca 1080 aaagtgctta aaatttgtgg gggcatcacc accatcacag cagcagcgcg cggagtgcgt 1140 tggttgaagg atctctatga ggaggctgaa ggacgtagac tggcaaaaat gtacatggca 1200 cgtggtgccg cccttattga acttgctgcc agtcgtgagg tgacaggcat tgatgagctc 1260 aagggcctcc ttgattgttt caccatattg atcgaggagg gcactgaact tatccacaag 1320 ttcggtacta gcccactagc aggcctggtg cgcacttatg tgtcagaact ggaaacccag 1380 gcaaacaaca ttagatccac cattaagctt gacaccccca gacgggtgcc cgttgtcatc 1440 atcctcactg gggcacctgg cattggaaaa acccgcttgg cacaatatgt tggccagcgc 1500 tttgggaaaa cgtccaattt ctcagtagct gtggaccacc atgacggcta cacagggaac 1560 actgtttgta tatgggatga gtttgatgtc gattccaagg gtgcgtttgt ggagacaatg 1620 attgggatcg caaacacggc acccttccca ttaaattgtg atagggttga aaataaaggg 1680 cgtgtgttca cgtccgacta tgtcatttgc acatccaact atcccacgtc agttatccca 1740 gacaacccaa gggctgcggc cttttatcgc agggtcctaa cagttgatgt cagcgcgcca 1800 gatttggagg aatggaaaaa gaggaatcct ggcaagcgtc ccactccgga cttataccaa 1860 gatgattttt ctcacctcaa attgatgctg agaccatatt tgggttacaa tccagacggg 1920 gatacacttg aaggccccag agttgccccc acccaaataa gtatagcagg actgataacc 1980 ctcatggaaa gaaggttcaa agaacaggct gggcccctgc agaacttgtg gttacaagtc 2040 cccaaaacac ttgtggaaca gtccacaaac atggtcaaag cattcatgta cgccaaccgt 2100 gcagtgtgcg acgtgatacc taatcccgcc acccgtgaca tcgccgagac tgcgttgaca 2160 aaaatcttcg tgtgtggcac cgcgccacca cctgagtttg ttggcaagca tatagtcatc 2220 actggcatag aggttggtga tgcgtccatc gctaactcat tactgtccat gtttaccacc 2280 accacacgac tgtctgccgc ggcccaaagg gagtatatgt atagagtgtg gagccctctg 2340 atccacatcc aagatcgaag cataaacact cagaatcttc catacatcaa tagagtgatc 2400 ccagtaacat cccattggga ctttttgagg ggtttgcgcc accatctcgg tttcacatct 2460 attccaggca tgtggaaggc attccaaggt tggcgcacat cacagggcat agttgatttt 2520 gtggcacacc atatggcaga tgtcacattc ccaagcaacc cagaatgcac tatcttccgc 2580 acgccagatg cggatgtggt cttctatacc tttggctcat atgtgtgctt tgccacccca 2640 gcacgagtgc cgtatgttgg tacaccacct accaccatcc attccaacac acctcgatgt 2700 atgacttggg gcgaaaccat agcactgtta tgtgaggtgg ttgccgagtt tgtccttcat 2760 ttcggtcctg tgattctatc tgcagccaac attgcctacc tcatgaccag aggctcaagg 2820 actgaggaag ccaagggtaa gaccaagcat ggacgtggca tgcgccatgg ccacagggcc 2880 ggagtgagcc tctcagacga tgagtatgac gaatggcgtg atctgatgcg agattggagg 2940 cgtgacatga gtgttaatga cttcttaatg ctcagggaga ggtctgcgct tggggtggac 3000 gatgaggacg aggccaggta tagagcatgg cttgagatcc gcgccatgcg aatggcaggg 3060 ggtgcgtaca cacatgccac tattattggt cgtggtggtg tgcgagatga aatcatacgc 3120 acggcaccac gcagagcccc aactcgcccc caacaacact atgaggaaga ggccccgaca 3180 gcaattgtgg agttcacgca gggtggtgac cacattggat acggggtaca cattggcaat 3240 ggcaatgtga taactgtcac ccatgtggca tcaacgtccg acgaggttaa cggtagtgct 3300 ttcaaaataa cacgcactgt cggagaaaca acgtgggtac aagggccatt ctcacaatta 3360 ccacacatgc aaataggcag tggctccccg gtttacttca ccacacggtt gcacccagtc 3420 ttcacaatat cagaggggac atttgaaact ccaaacatca ctgtgaatgg gttccatgtc 3480 agaataatga atggttaccc aaccaagaaa ggtgactgcg ggctgcccta tttcaattcc 3540 aaccgccagt tagtggcgtt gcacgccggc acggatacac aaggtgaaac aaaagtggct 3600 caacgtgttg tcaaggaggt cactacccaa gatgaatttc aatggaaggg tttgcccgtg 3660 gtgaagtctg gacttgacgt tgggggtatg cccactggga cccgatacca cagatcccct 3720 gcgtggcccg aagaacagcc tggtgagaca cacgcaccag caccttttgg tgcaggagac 3780 aagaggtaca cattttcaca gacagaaatg ttagtaaacg gattgaagcc ctatacggaa 3840 cccaccgctg gggtaccacc acagctcttg tcccgcgcgg ttacacatgt gcgatcatac 3900 atagaaacaa tcattggcac acaccggtct cctgtgctaa cataccatca agcatgtgag 3960 ctgcttgaac ggaccacttc atgtggtccg ttcgtacagg gtctcaaggg cgactactgg 4020 gatgaagagc aacagcagta cactggtgtg ctggcaaacc accttgaaca ggcatgggac 4080 aaggctaaca aagggatagc accaaggaat gcctataaat tggcacttaa agatgagctt 4140 aggccaattg agaagaataa ggctggcaaa cgcaggttgt tgtggggctg tgatgctgcc 4200 accacactca tagccaccgc ggcttttaag gccgtggcta ccaggctaca ggtggtgacg 4260 ccaatgacac cggttgctgt cggcatcaac atggactctg ttcagatgca agtgatgaat 4320 gactccttga agggaggtgt cctttactgc ttggattatt ctaaatggga ttccacacaa 4380 aatcccgcag taacagcagc atcactagca atattggaga gatttgctga accccaccca 4440 attgtgtctt gtgccattga ggctctttcc tccccagcag agggttatgt caatgacatc 4500 aagtttgtta cacgcggcgg cctaccatct gggatgccat ttacatctgt tgtcaattcc 4560 attaaccata tgatatatgt ggcggcagcc attctacagg catatgaaag tcacaatgtt 4620 ccgtacactg gaaatgtctt ccaagtggaa actgtccaca cgtacggtga tgattgcatg 4680 tatagtgtgt gccctgccac tgcttcaatc ttccacgctg tgcttgcgaa cctgacatcg 4740 tatggactca agcccactgc agcagacaag agtgatgcaa tcaaacctac caacacacca 4800 gtgtttttga agaggacatt cacgcaaacc ccacatggag ttcgtgcact gctagacatc 4860 acttcgataa ctagacagtt ttattggctg aaagctaata ggacatcaga cccttccagc 4920 ccacctgctt tcgatcgaca ggcacgcagt gcacagctgg agaacgcgct ggcctatgct 4980 tcacaacacg ggcccgttgt gtttgacacc gtacgccaaa ttgccataaa gactgcccaa 5040 ggagagggac tggtgcttgt taacaccaat tacgaccagg ctctcgccac ctacaatgct 5100 tggttcatag gtggtacagt acctgaccca gtgggtcaca ctgaaggaac ccacaaaata 5160 gtgtttgaga tggagggcaa tggctccaac ccagagccaa agcagagcaa caacccgatg 5220 gtcgttgacc cgcctggcac aacaggtccg accacatccc acgttgttgt tgctaatccg 5280 gagcaaccca atggggccgc acagcgcctg gagttggctg ttgccactgg tgcaatccaa 5340 tccaatgtcc ctgaggcaat acgcaactgc tttgcagtct ttcgtacttt tgcttggaac 5400 gacaggatgc ccacgggaac ttttcttgga tctatatcgc ttcatcccaa cattaacccg 5460 tacactgctc acctctctgg gatgtgggcc gggtggggcg gtagttttga ggtccggcta 5520 tcgatctctg gttctggcgt gttcgctggg cgtatcattg cttctgtcat accaccaggg 5580 gttgatccct cgtccatcag ggacccaggc gtgttgcctc acgctttcgt tgatgctcgc 5640 atcactgagc cagtttcttt catgatccct gatgttagag cagtggacta ccataggatg 5700 gacggtgctg agcccacttg ctcattagga ttttgggttt accaaccatt gctcaacccg 5760 ttttccacca ccgccgtttc aacatgttgg gtgtcagtag agactaaacc aggcggtgat 5820 tttgatttct gcctactaag gccaccaggt caacagatgg agaatggggt ttcaccagaa 5880 ggtctgctgc ccaggcgcct aggttactcg cgtggtaacc gtgttggtgg tttggtggtt 5940 ggcatggtct tggtggctga gcacaaacag gttaatagac acttcaactc caattcagtc 6000 acttttggtt ggtccacggc acccgtcaac ccaatggcag cagaaattgt gacaaaccag 6060 gcacattcaa cgtcacgtca tgcttggctt tccattggtg ctcaaaacaa gggtccattg 6120 tttcctggaa tacccaacca tttccccgac tcatgtgcat caacaatcgt gggggccatg 6180 gacacctccc ttggtggccg gccgtctact ggggtatgtg gacctgccat aagctttcaa 6240 aataatggtg atgtgtacga gaatgataca ccctcagtca tgtttgccac ttatgaccca 6300 cttacgtcag gcacgggggt tgctcttacc aacagtatca accccgcatc cctggcattg 6360 gtgcgcatat ccaataatga ctttgacacc agtggctttg ccaatgacaa gaacgtggtg 6420 gttcaaatgt catgggagat gtatacaggc accaatcaaa ttagaggtca ggtcacacca 6480 atgtctggca ctaactatac cttcacatca accggtgcaa acactcttgt gttgtggcag 6540 gagcgcatgc tcagctatga tggacaccaa gcaatactgt actcgtcaca attggagagg 6600 acggctgagt actttcagaa cgacatagtt aacatacctg aaaactctat ggcagtgttc 6660 aatgtggaaa ccaactctgc atctttccaa attggcatta gacctgatgg ctatatggta 6720 acaggtggct ccattggcat taatgtgccg cttgaaccag aaacccgatt ccaatacgtt 6780 ggaattctcc ctttgtccgc agctttatct gggcccagtg ggaacatggg aagggccaga 6840 cgggtgttcc aatgagttgg ttggtaggcg ccctgcagac tttcgggtct ttggctgatg 6900 tcgctggcac tgtctccaac atagtgtacc agcagcgcca ggccgcccag ttggaaaaac 6960 agaatgaact aatggagaca tggatgaaca aacaagaggc actgcagaag tcccagatgg 7020 agttaactcg agacctctcc atcaatggtc cagccgcccg ggtgcaatcg gcacttgatg 7080 caggttttga tgaagtgagt gcacggcgta ttgctggttc aggtgagcgt gtgatctggg 7140 ggaatttgga tcgacccatc atgcatgctg gcactatgga cagcatacgc cagactagac 7200 atttagactc tctgagtcat tcattggcta cattcaagaa tggaactcca ttcgggaaac 7260 cagcgccccc aacagcaaaa tctggaaggc cccaggccac aactgcacaa atcaccattg 7320 gtcataaccc tggtagcacc agtgtttaaa tttaaatttt cttttctttg aaacggtccc 7380 acacgcgttc gggtgggttt tagacaatta agcgattgtc gccgtccct 7429 // |
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