 |
|
EBI DbfetchID AY548453; SV 1; linear; genomic DNA; STD; PRO; 4164 BP. XX AC AY548453; XX DT 19-JUN-2004 (Rel. 80, Created) DT 19-JUN-2004 (Rel. 80, Last updated, Version 1) XX DE Fremyella diplosiphon clone GroupC putative two component regulatory DE proteins and putative purine binding chemotaxis protein genes, complete DE cds; and putative ATP synthase beta subunit gene, partial cds. XX KW . XX OS Fremyella diplosiphon OC Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Microchaete. XX RN [1] RP 1-4164 RX DOI; 10.1128/JB.186.13.4338-4349.2004 RX PUBMED; 15205436. RA Stowe-Evans E.L., Ford J., Kehoe D.M.; RT "Genomic DNA microarray analysis: identification of new genes regulated by RT light color in the cyanobacterium Fremyella diplosiphon"; RL J. Bacteriol. 186(13):4338-4349(2004). XX RN [2] RP 1-4164 RA Stowe-Evans E., Ford J., Kehoe D.M.; RT ; RL Submitted (13-FEB-2004) to the EMBL/GenBank/DDBJ databases. RL Biology Department, Indiana University, 1001 East Third Street, RL Bloomington, IN 47405, USA XX DR StrainInfo; 322266; PCC 7601. XX FH Key Location/Qualifiers FH FT source 1..4164 FT /organism="Fremyella diplosiphon" FT /strain="FD33" FT /mol_type="genomic DNA" FT /clone="GroupC" FT /note="identified by microarray analysis synonym: Calothrix FT PCC 7601" FT /db_xref="taxon:1197" FT CDS 258..1406 FT /codon_start=1 FT /transl_table=11 FT /product="putative two component regulatory protein" FT /note="GroupC-A" FT /db_xref="GOA:Q6H034" FT /db_xref="InterPro:IPR001789" FT /db_xref="InterPro:IPR011006" FT /db_xref="UniProtKB/TrEMBL:Q6H034" FT /protein_id="AAT41935.1" FT /translation="MPKYIWSKKMVILGNVLNEFKTCTQLQYNGTLNLKSAKNHKWSFY FT YRLGRIIWASGGIHPFRRWRRQMAQNCPEIDVDKIRLSSQDVAIEYWDYRLLEILYKKQ FT KIQREQFHNIVEHTIAELFFDLAQESDFSDVTCNRSQELIVEMPMSFTSADVSLQMHDS FT WKIWSEAGLANLYPDLAPIIRKPEQLQQLVSPAVYNNFVNLINGKYTLRDLAVKMKQNP FT LPVARSLLPYILKGIIELIEIPDLPLSVVTVQKNSAPATPQKPNVPLVACVDDSPQVGK FT LLEEIITSHGLRFIKIHDAVQALPILIQNKPDLIFLDLMMPVASGYEICTQLRRISAFA FT HTPIIILTGNDGLLDRVRAKVVGSTDFITKPVASDKVMSIVR" FT CDS 1977..2342 FT /codon_start=1 FT /transl_table=11 FT /product="putative two component regulatory protein" FT /note="GroupC-C" FT /db_xref="GOA:Q6H033" FT /db_xref="InterPro:IPR001789" FT /db_xref="InterPro:IPR011006" FT /db_xref="UniProtKB/TrEMBL:Q6H033" FT /protein_id="AAT41936.1" FT /translation="MNTVLVVEDGLTDMEIISTYLQQAGYYVLSAKTSEEAQYQIDTNK FT PDVIFLDVILPGKSGYEICRELKTNPQTSNIPVVFCSTKNGDVDKVWGNMLGAEAYLSK FT PVDRKELVETLQRLIIK" FT CDS 2400..2873 FT /codon_start=1 FT /transl_table=11 FT /product="putative purine binding chemotaxis protein" FT /note="GroupC-D" FT /db_xref="GOA:Q6H032" FT /db_xref="InterPro:IPR002545" FT /db_xref="UniProtKB/TrEMBL:Q6H032" FT /protein_id="AAT41937.1" FT /translation="METKQKFLSFNLGAKDTGVIQLQHITEVLQISLAEICGVPQMPNC FT VLGIYNWRGEMLWLVDLEEMLGYSSLLQGSNLVAKMMTIVIENEGKSLGLLVRQLTDIE FT WLNTQEMKTHSTELFSPLMSPFLQGYFISHNEEMMFTLDALAIIQAPIWGNHN" FT CDS complement(3224..>4164) FT /codon_start=3 FT /transl_table=11 FT /product="putative ATP synthase beta subunit" FT /note="GroupC-E" FT /db_xref="GOA:Q6H031" FT /db_xref="InterPro:IPR000194" FT /db_xref="InterPro:IPR000793" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR005722" FT /db_xref="UniProtKB/TrEMBL:Q6H031" FT /protein_id="AAT41938.1" FT /translation="LTPYRRGGKIGLFGGAGVGKTVIMMELINNIATQHGGVSVFAGVG FT ERTREGNDLYNEMIESGVINKDNLNESKIALVYGQMNEPPGARMRVGLSGLTMAEYFRD FT VNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGALQERITSTTEGSI FT TSIQAVYVPADDLTDPAPATTFRSLGWNKQYCPRSLASKGIYPAVDPLGSTFTMLQPEI FT VGDEHYSTARAVQATLQRYKELQDIIAILGLDELSEEDRLTVARARKVERFLSQPFFVA FT EVFTGSPGKYVKLEDTIKGFQKILSGELDDR" XX SQ Sequence 4164 BP; 1331 A; 747 C; 810 G; 1274 T; 2 other; ataattattt aattatggcg aaaaatagag gcgctaatca cgggttattc attagcagat 60 aactcatcta ttagccctat ttttgctatt ctttgggtcg ataatgctca tttttgactt 120 tgtagttata ttattttcta caacataaat agcaataacc cggagatttt tcccaatata 180 ttggtattta ttcaagcttg tttattttga ctaatatatg ggtaatgtaa tgtgagcagg 240 gctgattttt tagtcaaata ccaaaatata tttggtcaaa aaaaatggtc atattaggta 300 atgtgctgaa tgaatttaaa acttgtacac aattacagta caatggcacg ttaaatctta 360 aaagcgcaaa aaatcacaaa tggagctttt attatcgtct agggcgaata atttgggcat 420 caggagggat tcatccattt cgccgttggc gaagacaaat ggcgcaaaac tgcccggaaa 480 ttgatgtaga taagatacgt ttaagttctc aagacgtagc aattgaatac tgggattatc 540 ggcttttaga aattttatat aaaaaacaaa aaattcaaag agagcaattt cataatattg 600 tagaacatac aatagcagaa ttattttttg atttagctca ggagtctgat ttttcagatg 660 taacttgcaa tcgtagccaa gaattgattg tagaaatgcc catgagcttt accagtgcag 720 atgtctcttt acagatgcat gattcgtgga agatttggtc agaagcaggt ttagcaaatt 780 tatatcctga tttagcaccg ataattcgta agccagaaca actccagcaa ttagttagtc 840 cagctgttta caataatttt gtaaatttga ttaatgggaa atatacactg cgagatttag 900 cggtaaaaat gaagcagaat ccattacccg ttgctcgttc attactacct tatatactta 960 aaggtattat tgaacttata gaaatacctg acttaccctt atcagttgtg actgtgcaga 1020 agaattctgc gccagcaaca cctcaaaagc ccaatgtacc attggtagcc tgtgtagatg 1080 atagccccca agtggggaaa cttttagaag aaattatcac ttctcacggg ctaagattta 1140 tcaaaattca cgatgctgtg caagctttac caattctcat tcaaaataag ccagatttaa 1200 ttttcttaga tttaatgatg cctgttgcca gtggttacga aatctgcact cagttgcggc 1260 gaatttctgc ctttgctcac acaccaataa ttatcctcac aggtaatgat ggtcttttag 1320 atagagttcg tgctaaagtt gttggctcta cggattttat cactaaacct gtggccagtg 1380 ataaggtaat gagtattgta cggtaagtat ttacctatcc aagcttcctc aacccagaaa 1440 aacacccctc aggctaatag cctgtaatac aagtattact ttcagtaatt cctgttcata 1500 ctggctcttg agactttata taatcacaca aaattattaa acccaaattt ctatcccacg 1560 aaaattagct aactgtttaa gtaagataat ttycagsctt tgttaaattg gcactacatt 1620 cttaaaaatt cacgcaagaa gctgattttt tagtatttaa tcacgcggtg aactcatttc 1680 caagattatc caagaattac taatatttta aggattgatg cagctgatat tgtcccgatt 1740 caacaacagc ctgtaacatc aagtagaaat tgaatctaaa cgtaaagcat tactgtaaca 1800 atttttgcca aagtctactt gaatataaca attaaataca tattatttct caaaattaac 1860 gactgatttt ggtttttaag tgctttttct gaggctaatg tatgaaaaat gtattagctt 1920 tgtaaaagcc aattttattg ttgagaatcc caatataaat ttaataggaa ataaatatga 1980 atactgtttt agttgttgaa gatggtttga cagacatgga aatcatcagt acatacttgc 2040 aacaagcagg atactatgta ttgagtgcta aaactagcga agaagctcaa taccaaattg 2100 atacaaataa gcctgatgtc atatttcttg acgttatttt gcctggtaaa agtggctatg 2160 aaatttgccg agagctaaaa actaatcctc aaactagtaa tatacctgta gttttttgtt 2220 ccaccaaaaa tggtgatgtg gataaagttt gggggaatat gcttggagcg gaagcttatt 2280 tatccaaacc cgtcgatcgc aaagaactag tagagacttt acagcgatta atcattaaat 2340 agagaattgc ggaatcagca aatagagtca aagttttagc agaaaaagga aaaattattt 2400 tggaaaccaa acaaaaattt ttaagtttta atttgggagc caaggataca ggcgtaattc 2460 agttacaaca catcactgaa gttttacaaa tatcattagc agaaatctgc ggtgttccgc 2520 aaatgcccaa ttgtgttttg gggatttata actggcgtgg cgaaatgctg tggctagtcg 2580 atttagagga aatgctaggg tattcttcgc tgttacaagg ctccaattta gttgccaaaa 2640 tgatgacaat tgtcatagaa aacgagggta aatctttagg tttactagta cgtcaattga 2700 cggatattga gtggctaaat actcaagaaa tgaaaacaca ttctacggaa ctgttttcgc 2760 cattaatgtc acctttttta cagggttact ttattagcca taatgaggag atgatgttta 2820 ccttagatgc tttagcaatt attcaagctc ctatatgggg taatcataat tagaatctgg 2880 tagtttatcg aagtactatg tttgcgatta ccagagtttt acttgcaatt tgaatgtagt 2940 taaatattac taattaaagt tagtgagggg tgtaaaatga aatattatgg cagtgctcaa 3000 accaatagta atgctgctaa taaaaaagaa gcattagaaa atcaaaatgg tagtccagaa 3060 atagccagta ttcctgggga tgagttggct ttattaaatg cagtatctca ggaatttaag 3120 agttggcggc agcaactaca aggtatatct agccaattac gtcaagcgcc agatttagat 3180 aatctattga aggttactgt tacacaagtt agagaaaaaa ttattagcga tcgtccaatt 3240 cgccagaaag aatcttctgg aatcctttga tggtatcttc caacttcaca tacttaccag 3300 gagaaccagt aaatacttct gctacgaaga atggctgaga taagaagcgc tcaaccttcc 3360 gggcgcgtgc taccgttaga cgatcttctt cagacaattc atctaaaccg agaatagcga 3420 tgatgtcttg cagttcttta tagcgctgca atgttgcttg gacagcacga gctgtgctgt 3480 aatgttcatc accaacgatt tctggctgaa gcatggtgaa agtagagcct aaggggtcta 3540 ctgctggata aatgccctta gaagccaaac tccgaggaca gtactgtttg ttccatccaa 3600 gtgagcgaaa ggtggttgca ggtgcggggt cagttaagtc gtccgcaggt acgtatacag 3660 cttgaataga ggtaatagaa ccttctgtag ttgaggtaat ccgctcttgt aatgcaccta 3720 cgtcagtacc taaagtaggc tgatatccta ccgcagaagg catccgtccc aatagcgcag 3780 atacttctga acctgcttgt acgaaccgga agatgttgtc aacaaacagc agtacgtctt 3840 gtttgttaac atcgcggaag tactctgcca ttgtcaatcc agacagacct acccgcattc 3900 ttgctccagg tggctcgttc atctgaccgt acactagagc aatttttgat tcgttgaggt 3960 tatctttgtt gattacccca gattcaatca tttcattgta gaggtcattt ccttcgcgag 4020 tgcgctcacc cacgccagcg aaaacggata cgccaccgtg ctgagtagcg atgttgttga 4080 tcaactccat catgatcacg gtcttaccaa cacccgcacc gccgaataga ccaatcttac 4140 cgccacgtcg gtaaggagtc agta 4164 // |
|