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EBI DbfetchID AY548449; SV 1; linear; genomic DNA; STD; PRO; 4544 BP. XX AC AY548449; XX DT 19-JUN-2004 (Rel. 80, Created) DT 19-JUN-2004 (Rel. 80, Last updated, Version 1) XX DE Fremyella diplosiphon clone 3109D10 putative methyl accepting chemotaxis DE protein gene, partial cds; putative chemotaxis proteins and putative two DE component regulatory protein genes, complete cds; and hypothetical protein DE gene, partial cds. XX KW . XX OS Fremyella diplosiphon OC Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Microchaete. XX RN [1] RP 1-4544 RX DOI; 10.1128/JB.186.13.4338-4349.2004 RX PUBMED; 15205436. RA Stowe-Evans E.L., Ford J., Kehoe D.M.; RT "Genomic DNA microarray analysis: identification of new genes regulated by RT light color in the cyanobacterium Fremyella diplosiphon"; RL J. Bacteriol. 186(13):4338-4349(2004). XX RN [2] RP 1-4544 RA Stowe-Evans E., Ford J., Kehoe D.M.; RT ; RL Submitted (13-FEB-2004) to the EMBL/GenBank/DDBJ databases. RL Biology Department, Indiana University, 1001 East Third Street, RL Bloomington, IN 47405, USA XX FH Key Location/Qualifiers FH FT source 1..4544 FT /organism="Fremyella diplosiphon" FT /strain="FD33" FT /mol_type="genomic DNA" FT /clone="3109D10" FT /note="identified by microarray analysis synonym: Calothrix FT PCC 7601" FT /db_xref="taxon:1197" FT CDS complement(<1..624) FT /codon_start=1 FT /transl_table=11 FT /product="putative methyl accepting chemotaxis protein" FT /note="3109D10-C" FT /db_xref="GOA:Q6H052" FT /db_xref="InterPro:IPR013026" FT /db_xref="UniProtKB/TrEMBL:Q6H052" FT /protein_id="AAT41919.1" FT /translation="MKWQFCGVRGGQDDIGRVDMAASIDDYLEIYKQACTAYAQQNYDV FT AATLVDRVVQNLPNDPNSHLLRGHIYYVLQQYDIAKAEYQQVLQLTNDRELIDFAQHGL FT ESIAQYQQLLPDEFAISENNEAISSSEISNGRFADTEELQNLPQNNNFASSSFGDNPFG FT EYQESGDEIEELSLDSSLDSSFDISAYSSSAFNGLPDSSAPLSND" FT CDS complement(718..1113) FT /codon_start=1 FT /transl_table=11 FT /product="putative chemotaxis protein" FT /note="3109D10-D" FT /db_xref="GOA:Q6H051" FT /db_xref="InterPro:IPR002545" FT /db_xref="UniProtKB/TrEMBL:Q6H051" FT /protein_id="AAT41920.1" FT /translation="MVSKPDFLSGGSQDHFRPELQVESPEGELHLRFYIPSRQEFALPA FT TGIREVMELSPDRITPIPNASPLLLGTLNLRGRVIWVADLGQFLGEATALNTDRAEIPV FT IAIEEQDTIVGLAVEEIGGMDWLECSI" FT CDS complement(1127..1492) FT /codon_start=1 FT /transl_table=11 FT /product="putative chemotaxis protein" FT /note="3109D10-E" FT /db_xref="GOA:Q6H050" FT /db_xref="InterPro:IPR001789" FT /db_xref="UniProtKB/TrEMBL:Q6H050" FT /protein_id="AAT41921.1" FT /translation="MSTVLIVEDSIAQREMITDLLKASGLTVTHASDGVEALEAIQSTP FT PDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAK FT PFQPTELVGTVKQLLRG" FT CDS complement(1675..2901) FT /codon_start=1 FT /transl_table=11 FT /product="putative two component regulatory protein" FT /note="3109D10-A" FT /db_xref="GOA:Q6H049" FT /db_xref="InterPro:IPR006162" FT /db_xref="UniProtKB/TrEMBL:Q6H049" FT /protein_id="AAT41917.1" FT /translation="MQGNLNEIDLRSILQLIELGQRTGQLLVKTHNFRNSNQIREEVNR FT HHHSFCYQPQQYWFVFFLNGQILYCQEGDGTSSRINDYLRHYRVETPLTEIQLASIDPL FT NIKEYSYLWALLEQNMINPKVARNIMHSLVYETLFDLLGLHTGSFIFHQSPALTPQLTT FT WEIAPLVSKIAKQLQNWQQLYPHIQSADQVPILSEMVQLNSSLSAETVNKLKHWADGKT FT SLRQLARYLNRDILTIAKVIYPYVQQGWLKLVYPSTNIFSINTENMVVEVNYKPRILCI FT DEVTTIGETIEAILQQQGYEVLTLTNPLESLSLVFQLKPQMIFCNITMPELDGYEICAM FT LRQSTAFRLVPIIMLSSQDRFIDRVRASMVGATDYLTKPVQETELLTLVAKYINKQPYI FT DIHKRYNCC" FT CDS 3462..>4544 FT /codon_start=1 FT /transl_table=11 FT /product="hypothetical protein" FT /note="3109D10-B" FT /db_xref="UniProtKB/TrEMBL:Q6H048" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAT41918.1" FT /translation="MLYLAEVQKQKGGLLSGSAKTELKLLACQRTDQIWSTVSEEVIAA FT EEASKLNDGALVLVEVNPNRQVQRIQEAGRPLVNILQNFSRQLEKFKLKEDEIDQWKQS FT LTFQAQELNRRELDMEVRMEQLQQMEDEFQRLEAQKQEFEASRQEIEKLQQQIERDRTE FT LAGAWEHLRGEQRRLEEFQADATQSKVLDEEQSRVLSELLDRLSSRVAPTETVREHLNF FT AFELVEKQQATLNEHWQNLEQQKTVATQQQQEVDSLAQTLSDRQNGVQEAQDSIQQQTA FT ELKVNSAILTSKQEYAQILKAQLQSQENLYQQIQSLAASSSDMILCEVDVKALENMPLE FT ELQRLVQDLQEKFDIDSSFVH" XX SQ Sequence 4544 BP; 1358 A; 935 C; 911 G; 1340 T; 0 other; atcgttactc aaaggtgctg aagaatctgg taatccatta aatgcactac tactatatgc 60 agagatatca aatgaactgt ctaaagaact atccaaggat agctcttcta tttcatctcc 120 agattcctgg tattcgccaa agggattgtc gccaaagctg ctgctagcaa aattattatt 180 ctgtggcaaa ttctgtaatt cttctgtatc agcgaaccga ccattagata tttctgatga 240 agaaatagct tcattatttt cactgatagc aaactcatct ggtagtaatt gttgatattg 300 agcaatactt tccagaccat gctgggcaaa atcaattaat tctcgatcgt tggttaactg 360 taaaacttgt tgatattcag ctttggctat atcgtactgc tgtaaaacgt agtatatgtg 420 accccgtaac aaatgggagt tagggtcatt tggcaaattt tgtaccactc gatccactaa 480 agtggcggca acatcatagt tctgttgcgc gtaagctgta caagcctgct tatatatttc 540 taagtaatca tctatacttg ctgccatgtc caccctccca atatcatcct gcccacctcg 600 cactccgcaa aattgccatt tgatccagta gtcttaaaga cttatttgtt ttggcatcta 660 ttaaccactc accgcgcaga aagggagcca tcgtatccgg tacatgagtt gttagcatca 720 gatgctgcac tcaagccagt ccataccacc tatttcttct accgctaaac ccactattgt 780 gtcttgttct tcgatagcga ttaccggaat ttctgctcta tctgtattta atgcggttgc 840 ttctcctaaa aattgaccta aatcagctac ccaaatgact cgacctcgta aatttagagt 900 acccaaaagt aaaggagaag cattaggaat cggagtgatt ctatcaggac tcaattccat 960 tacctctcga attccagttg ctggtagtgc aaactcttgg cgcgagggga tgtaaaaccg 1020 caaatgtaat tcaccttcag ggctttctac ttgtaattca ggacggaagt ggtcttgact 1080 accaccactt aaaaagtccg gtttactgac cattttcttt tcatccttat cctcgcagca 1140 attgtttgac tgttcccacc aactcagttg gttgaaacgg tttggctata taagcgtctg 1200 caccctgttt cataccccag tagcgatcaa attcttcacc tttggaagaa cacatcacaa 1260 cggggacatt ttgggttttc ggatcggatt ttaaccgacg gcaaacttcg tagccgttca 1320 tccggggcat gacaatatcc aagaccacta aatccggagg tgtgctttga atggcctcca 1380 aagcttcaac tccatcactg gcatgggtga ccgttaagcc acttgctttc aggaggtctg 1440 taatcatctc cctttgtgcg atactgtctt ccacaatcag aactgtactc ataaatgcct 1500 atctacctcc tgatgtagac gttcctactt ggaacattcc ctgattcccc cgcaagtatt 1560 tagtgtataa attaagtcta ttccttaact gatttactag ataataactt tatactggtt 1620 gtactggggc tggctgattc tgtgataaca ttttttacct catcttttat acaatcaaca 1680 acagttgtat ctcttatgta tgtcaatgta aggctgttta ttgatatatt ttgctacgag 1740 cgtgagtaac tcagtttctt gcacaggctt agtcaaataa tcggtagccc cgaccatact 1800 agccctgact cgatcgataa acctatcttg gctactcagc ataataatcg gcaccagccg 1860 aaatgctgta gattggcgca gcatggcaca aatctcatat ccatctaatt ccggcatggt 1920 aatattgcaa aaaatcatct gcggcttgag ttgaaaaacg agactgagcg actctaaggg 1980 attagttaaa gttaacactt cataaccttg ttgctgtaaa attgcctcta tagtctcacc 2040 aatcgttgtt acttcgtcaa tacataatat ccgtggtttg tagttgacct ccactaccat 2100 gttctctgta ttaatactga atatattagt actgggatat accaatttca gccatccctg 2160 ttggacgtac ggatatatta ccttggcaat tgtcaatatg tctcggttga gataacgagc 2220 aagttgccgt aaagatgttt tgccatctgc ccaatgctta agtttattga ctgtttctgc 2280 tgataaagat gaattcaatt gaaccatctc agaaagtatg ggcacttgat cggcagactg 2340 aatgtgagga tataactgct gccaattttg cagttgcttg gcaattttac tgactagggg 2400 agctatctcc caagtggtta gttgtggagt tagagccgga ctttgatgga agataaaact 2460 acctgtgtgc aaacccagta aatcaaagag cgtttcatac accagactat gcataatatt 2520 acgcgctact ttggggttaa tcatattttg ctctaacagt gcccaaagat agctatattc 2580 ttttatattc agtggatcta tggaggctag ctggatttcg gtgagcggag tctccacacg 2640 gtaatgtctt aagtaatcgt taatccttga tgaagtacca tccccttctt ggcaatagag 2700 aatctggcca tttaagaaaa agacgaacca gtactgttgt ggttggtagc aaaaggaatg 2760 gtgatgtctg ttcacctctt ctctaatttg gttgctattg cgaaagttat gagttttcac 2820 caacagttgg ccagttcgct ggcccaactc aatcaattgc aggatactac gaagatctat 2880 ttcatttaaa tttccctgca tttagctcaa aggtgctcct tgcgatcctg ttgatattct 2940 ttaattaatt ttgcccagta attttttgat gttttaacta gcaccatcga tctacactaa 3000 attgataatt tctgcttaat gtgaatttgg tgtaaattat cccatcaggg tttctagcct 3060 agcccaaaat tacagttttg tgaggatcta cgaaattaca agggttttcc agctggattt 3120 acattttatg taatttgtta tatacaaata aaattactgc ctataaaaac atctttagca 3180 atagaatacg ttcagcaata ttccttaatt ttttgtaata aactttgatg aagctagtaa 3240 tcacacggta gccatcatta ttaccatcag cacacaatat aaaagcgcga tccagagtaa 3300 gcgcatctag atttatatat atcaaggcgt gatatgtcat gtctataaat agttttgcct 3360 gatttgattt tccctaactg cggttaaatc aaacaggtta acagaattat caatggtata 3420 aaccaaatca cggacatcaa gtacacaaaa ggactaacgg tgtgctgtat ttagcagaag 3480 tacaaaagca aaaaggcggc ttacttagtg gtagtgccaa aactgaattg aaactgctgg 3540 cttgtcagcg aaccgaccag atttggagta ctgtgtcgga agaagtgatt gcggcagagg 3600 aagcaagtaa attaaatgat ggtgcattag tactagtaga agtgaatccc aaccgccaag 3660 tgcaacggat tcaagaagct ggacggccac tggttaatat attgcagaat ttttctcggc 3720 agttagaaaa atttaaactc aaggaagacg agatcgatca gtggaaacaa tcactgacat 3780 ttcaggcgca agaattaaat cgccgtgaat tggacatgga agtccgtatg gagcagttgc 3840 aacaaatgga ggatgagttt caacgactgg aggcgcaaaa gcaggaattt gaagcctccc 3900 gtcaagaaat tgaaaagttg caacaacaaa ttgaacgcga tcgcacagaa ttagctggtg 3960 cttgggagca tctccgaggt gagcagcgtc ggctggaaga atttcaagca gatgccacac 4020 agagtaaggt tttagacgaa gagcaaagtc gagtattaag tgagttactc gatcgcttgt 4080 ctagtcgtgt agctccgaca gagacagtca gggaacacct gaattttgct tttgaattag 4140 tcgaaaagca gcaagctact ctcaatgaac actggcaaaa cctagagcag caaaaaactg 4200 tagcgactca acagcaacaa gaagtagata gcttggccca aaccttgagc gatcgccaaa 4260 atggtgtgca agaagcacaa gattcgatac agcaacaaac agcagaatta aaagttaaca 4320 gcgcaattct gacaagcaag caagaatacg cgcaaatttt gaaagcacaa ttgcaaagcc 4380 aagaaaattt atatcagcag attcagtcct tggctgcaag ttctagcgat atgattcttt 4440 gcgaagtaga tgtcaaagct ttagagaata tgcctttaga agaactgcaa agattagtgc 4500 aagatttgca ggagaaattt gatattgatt ctagctttgt ccac 4544 // |
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