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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY450598; SV 1; linear; genomic DNA; STD; PRO; 1299 BP.
XX
AC   AY450598;
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DT   11-JAN-2004 (Rel. 78, Created)
DT   26-OCT-2005 (Rel. 85, Last updated, Version 2)
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DE   Helicobacter pylori strain DSM 6709 alpha-1,4 fucosyltransferase (fucTIII)
DE   gene, complete cds.
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KW   .
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OS   Helicobacter pylori
OC   Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
OC   Helicobacteraceae; Helicobacter.
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RN   [1]
RP   1-1299
RX   DOI; 10.1093/glycob/cwj004
RX   PUBMED; 16000696.
RA   Rabbani S., Miksa V., Wipf B., Ernst B.;
RT   "Molecular cloning and functional expression of a novel Helicobacter pylori
RT   alpha-1,4 fucosyltransferase";
RL   Glycobiology 15(11):1076-1083(2005).
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RN   [2]
RP   1-1299
RA   Rabbani S., Miksa V., Wipf B., Ernst B.;
RT   ;
RL   Submitted (27-OCT-2003) to the EMBL/GenBank/DDBJ databases.
RL   Institute of Molecular Pharmacy, University of Basel, Klingelbergstrasse
RL   50, Basel 4056, Switzerland
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FH   Key             Location/Qualifiers
FH
FT   source          1..1299
FT                   /organism="Helicobacter pylori"
FT                   /strain="DSM 6709"
FT                   /mol_type="genomic DNA"
FT                   /country="Sweden:Gavle, University Hospital"
FT                   /isolation_source="endoscopic biopsy"
FT                   /db_xref="taxon:210"
FT   gene            1..1299
FT                   /gene="fucTIII"
FT   CDS             1..1299
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="fucTIII"
FT                   /product="alpha-1,4 fucosyltransferase"
FT                   /function="catalyzes alpha-1,4 fucosylation"
FT                   /db_xref="GOA:Q6ST35"
FT                   /db_xref="InterPro:IPR016646"
FT                   /db_xref="UniProtKB/TrEMBL:Q6ST35"
FT                   /protein_id="AAR88243.1"
FT                   /translation="MFQPLLDAYIDSTRLDETDYKPPLKIAVANWWGGVEEFKKSTLYF
FT                   ILSQRYTITLHRNPDKPADIVFGNPLGSARKILSYQNAKRVFYTGENEVPNFNLFDYAI
FT                   GFDELDFNDRYLRMPLYYAHLHYEAELVNDTTSPYKIKDNSLYALKKPSHHFKENHPNL
FT                   CAVVNNESDPLKRGFASFVASNPNAPKRNAFYDALNSIEPVTGGGSVKNTLGYNVKNKN
FT                   EFLSQYKFNLCFENSQGYGYVTEKILDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDFN
FT                   NFDEAIDHVRYLHTHPNAYLDMLYENPLNTLDGKAYFYQNLSFKKILDFFKTILENDTI
FT                   YHCDAHNYSALHRDLNEPLVSIDDLRINYDDLRINYDDLRINYDDLRINYERLLQNASP
FT                   LLELSQNTSFKIYRKAYQKSLPLLRAIRRWVKK"
XX
SQ   Sequence 1299 BP; 411 A; 259 C; 237 G; 392 T; 0 other;
     atgttccagc ccttactaga cgcttatata gacagcaccc gtttagatga aaccgattat        60
     aagccccccc taaaaatcgc tgtggcgaat tggtggggag gcgttgaaga atttaaaaag       120
     agcactcttt atttcatctt aagccaacgc tacacaatca ctttacaccg aaaccctgat       180
     aaacctgcgg acatcgtttt tggtaaccct cttggatcgg ctagaaaaat cttatcttat       240
     caaaacgcaa aaagagtgtt ttacacgggt gaaaatgaag tccctaactt caacctcttt       300
     gattacgcca taggctttga tgaattggat tttaatgatc gttatttgag aatgcctttg       360
     tattacgccc atctgcacta tgaagctgag cttgttaatg acaccacttc accttacaag       420
     attaaagaca acagccttta tgctttaaaa aaaccttccc atcattttaa agaaaaccac       480
     cctaatttgt gcgcagtagt gaataatgag agtgatcctt tgaaaagagg gtttgcgagt       540
     tttgtcgcga gcaaccctaa cgctcctaaa aggaacgctt tctatgacgc tttaaattct       600
     attgagccag ttactggggg agggagcgtg aaaaacactc tgggttataa tgtcaaaaac       660
     aaaaacgagt ttttaagcca atacaagttc aacctgtgtt ttgaaaactc gcaaggttat       720
     ggctatgtaa ctgaaaaaat ccttgacgct tatttcagcc acaccattcc catttattgg       780
     gggagtccca gcgtggcgaa agattttaac cctaagagtt ttgtgaatgt gcatgatttc       840
     aacaactttg atgaagcgat tgatcatgtg cgatacctac acacgcaccc aaacgcttat       900
     ttagacatgc tttatgaaaa ccctttgaac acccttgatg ggaaagctta cttttaccaa       960
     aatttgagtt ttaaaaaaat cctagatttt tttaaaacga ttttagaaaa cgatacgatt      1020
     tatcattgcg atgcccataa ttattctgct cttcatcgtg atttgaatga gccgttagtg      1080
     tccattgatg atttgagaat caattatgat gatttgagaa tcaattatga tgatttgaga      1140
     atcaattatg atgatttgag aatcaattat gagcgccttt tgcaaaacgc ttcgccttta      1200
     ttggaattat cccaaaacac ctcttttaaa atctatcgca aagcctatca aaaatcctta      1260
     cccttgttgc gcgccataag gagatgggtt aaaaaataa                             1299
//
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