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EBI DbfetchID AY423899; SV 1; linear; genomic DNA; STD; PRO; 3242 BP. XX AC AY423899; XX DT 25-MAR-2004 (Rel. 79, Created) DT 16-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Campylobacter jejuni strain 81-176 WaaV (waaV), WaaF (waaF), and Gmh (gmh) DE genes, complete cds; and unknown gene. XX KW . XX OS Campylobacter jejuni OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Campylobacteraceae; Campylobacter. XX RN [1] RP 1-3242 RX DOI; 10.1128/IAI.72.4.2452-2455.2004 RX PUBMED; 15039381. RA Kanipes M.I., Holder L.C., Corcoran A.T., Moran A.P., Guerry P.; RT "A deep-rough mutant of Campylobacter jejuni 81-176 is noninvasive for RT intestinal epithelial cells"; RL Infect. Immun. 72(4):2452-2455(2004). XX RN [2] RP 1-3242 RA Kanipes M., Holder L., Guerry P.; RT ; RL Submitted (29-SEP-2003) to the EMBL/GenBank/DDBJ databases. RL Enteric Diseases Dept, Naval Medical Research Center, 503 Robert Grant Ave, RL Silver Spring, MD 20910, USA XX FH Key Location/Qualifiers FH FT source 1..3242 FT /organism="Campylobacter jejuni" FT /strain="81-176" FT /mol_type="genomic DNA" FT /db_xref="taxon:197" FT gene complement(81..908) FT /gene="waaV" FT CDS complement(81..908) FT /codon_start=1 FT /transl_table=11 FT /gene="waaV" FT /product="WaaV" FT /function="LOS core biosynthesis" FT /note="glucosyltransferase" FT /db_xref="InterPro:IPR001173" FT /db_xref="UniProtKB/TrEMBL:Q6TDC7" FT /protein_id="AAR82937.1" FT /translation="MPQLSIIIPLFNSCDFILRALQSCINQTLKDIEILIIDDKSKDNS FT LNMVLEFAKKDPRIKIFQNEENLGTFASRNLGVLHSSSDFIMFLDSDDFLTPGACEIAF FT KEMKKGFDLLCFDAFVHRVKTKQFYRFKQDGVFNQKEFLEFLSKQRHFCWSVWAKCFRK FT DIILKNFEKVKFEKVKIDERLSYGEDVLFCYIYFMFCEKIAVFKTCIYHYEFNPNGRYE FT NKNKEILNQNYYDKKKSNEIIKRLSKEFLHDEFHQKLFEVLEREEVGVKNRLK" FT gene 889..1920 FT /gene="waaF" FT CDS 889..1920 FT /codon_start=1 FT /transl_table=11 FT /gene="waaF" FT /product="WaaF" FT /function="involved in addition of second heptose residue FT to LOS core" FT /note="heptosyltransferase" FT /db_xref="GOA:Q6TDC6" FT /db_xref="InterPro:IPR011910" FT /db_xref="UniProtKB/TrEMBL:Q6TDC6" FT /protein_id="AAR82938.1" FT /translation="MIESCGIFFLNFVKIIKTILSKFRKFMKIFIHLPTWLGDAVMASP FT ALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFS FT FAFRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPF FT KLKFQNPLVLKNGKKILGLNPGASFGSAKRWDVSYFAKVALNFSQSHEILIFGAGKAEQ FT ELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDSGPMHISAVYKVKTVA FT IFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEIIIEVSKQLL FT FLN" FT CDS complement(1927..2682) FT /codon_start=1 FT /transl_table=11 FT /product="unknown" FT /note="Orf3" FT /db_xref="GOA:Q9ALY2" FT /db_xref="InterPro:IPR002654" FT /db_xref="UniProtKB/TrEMBL:Q9ALY2" FT /protein_id="AAR82939.1" FT /translation="MKVFIINLERSLDRKEHIQKQIQKLFEKNLSLKNKLEFIFFKAID FT AKNKEHLEFKDHFPWWGSWVLGRELSDGEKACFASHYKLWQECVKLDEPIIILEDDVEF FT SDEFLNNGAEYIDELLKSKYEYIRLCYLTQGKMLKLNDNFLFTLDSIGGTQGYLIKPIS FT ALKFIDNLKFWIKPVDNVMDMYYYSKVFTITYTPLLLKTTDINSTIEERKKDKRPIFKR FT IIKEICRLYFIYLKFTYKQKAIKFLRREV" FT gene complement(2682..3242) FT /gene="gmh" FT CDS complement(2682..3242) FT /codon_start=1 FT /transl_table=11 FT /gene="gmh" FT /product="Gmh" FT /function="LOS biosynthesis" FT /note="sedoheptulose 7-phophate isomerase" FT /db_xref="GOA:Q6TDC4" FT /db_xref="InterPro:IPR001347" FT /db_xref="UniProtKB/TrEMBL:Q6TDC4" FT /protein_id="AAR82940.1" FT /translation="MISLVEKEWQEHQKIAQASEILKGQIAKVGELLCECLKKGGKILI FT CGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEA FT LGNENDVLIGISTSGKSPNVLEAFKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSDD FT TARIQEMHILIIHTLCQIIDEGF" XX SQ Sequence 3242 BP; 1140 A; 589 C; 365 G; 1148 T; 0 other; aaaaatcaat ttcctactat aatccaaata aactttattt tagagatatt ttagaactaa 60 aatcaaaaaa aaattttaat ctattttaat ctatttttca cccctacttc ctctctctcc 120 aaaacttcaa ataatttctg atgaaattca tcatgtaaaa actctttgga gagtcttttt 180 atgatttcat tacttttctt tttatcataa taattttgat ttaaaatttc tttattttta 240 ttctcatatc ttccatttgg attaaattcg taatgataaa tgcaagtttt aaaaacagct 300 attttctcgc aaaacataaa ataaatataa caaaaaagca catcttcgcc gtaactcaaa 360 cgctcatcga ttttaacctt ttcaaattta accttttcaa aattttttaa gatgatatct 420 tttctaaaac acttcgccca aactgaccag caaaaatgcc tttgtttgct taagaattct 480 aaaaattctt tttgattaaa aactccatct tgtttaaaac gataaaattg tttggttttt 540 accctatgta caaaggcatc aaaacaaagc aaatcaaaac cttttttcat ctctttaaac 600 gctatttcac aagcaccagg tgtcaaaaaa tcatcactat ctaaaaacat tataaaatca 660 gaactagaat gcaaaactcc taaatttcta cttgcaaaag tgcctaaatt ttcttcattt 720 tgaaagattt ttatccttgg atctttttta gcaaattcta aaaccatatt taaactatta 780 tctttacttt tatcatcgat aatcaaaatt tcaatatctt ttaaagtctg atttatacaa 840 ctttgcaaag ctcttaagat aaaatcacaa gaattaaaaa gcgggattat gatcgaaagt 900 tgtggcatat ttttcctaaa ttttgttaaa ataataaaaa caattctatc aaagtttagg 960 aaatttatga aaatttttat acatcttccc acttggctag gcgatgcagt gatggcttcg 1020 cctgctttat acgctataaa agaacatttt aaaaatgccc aatttatcct ttatggctct 1080 ttggtttcca cagcactttt taaagaattt cctaattcta aaatcatcat agaaaataaa 1140 caatctcgct ataaacaagc cctatcttta cgcaaagaac ttggtaagat cgattttagc 1200 tttgctttta ggtctgcgtt ttcttctaag attatcttgc atattcttaa aacgaaacaa 1260 agatattttt ttgacaaaaa caagcacaaa gaagaacatc aagttttaaa atacctttat 1320 tttatagaaa actcacttag tataaaagct cattttaaag acttaaagct tccctttaag 1380 ctaaaatttc aaaaccctct tgtcttaaaa aatggtaaaa aaattctagg actcaaccct 1440 ggtgcaagct ttggaagtgc aaaaagatgg gatgtgagtt attttgctaa agtggcttta 1500 aatttcagcc aaagtcatga gattttaatc tttggtgcag gaaaagccga acaagaactt 1560 tgtaatgaaa tttatcaaat tttaaaagaa caaaacataa aagtaaaaaa tctttgcaat 1620 aaaactacca tcaaaaccct ttgtcaaaat atcgcttttt gcgatctttt catcacaaat 1680 gacagtggac ctatgcacat aagtgcggtt tataaggtaa aaaccgtggc tatttttggt 1740 cctacgaaat ttactcaaac ttcaccttgg caaaatgaaa atgcaaaatt agtacattta 1800 gatctagctt gtatgccttg tatgcaaaaa acctgccctt taaaacacca caaatgcatg 1860 aaagatttaa aaccagaaat catcatagaa gtaagtaaac aattgctatt tctaaattaa 1920 ttaaaattat acttcacgtc ttaaaaattt tattgccttt tgtttatatg taaattttaa 1980 ataaataaaa tacaacctac aaatttcttt aattattctt ttaaaaatag gtcttttgtc 2040 tttttttctc tcttcaatag tggaattaat atctgttgtc tttagtaaaa gaggagtgta 2100 agttatagta aaaactttac tataataata catatccata acattatcca ctggtttaat 2160 ccaaaatttt aaattatcaa taaattttaa agccgaaata ggttttataa gatacccttg 2220 tgttccgcca atactatcca aagtaaacaa aaaattatca ttaagcttca acattttacc 2280 ttgtgttaaa taacaaagtc ttatatattc atacttactc tttaacaatt catctatata 2340 ttctgcccca ttatttaaaa attcatcgct aaattccaca tcatcttcta ggatgattat 2400 aggctcatca agcttcacac attcttgcca aagtttataa tgactagcaa aacaagcttt 2460 ttctccatca gaaagctctc tgcccagcac ccaagaaccc caccaaggaa aatgatcttt 2520 aaattccaaa tgttctttat ttttagcatc aatagcctta aagaaaataa attctaattt 2580 attttttaaa ctaagatttt tttcaaaaag cttttgaatt tgtttttgta tatgctcttt 2640 tctatctaaa gaacgctcta agttgatgat aaaaactttc attaaaaacc ctcatctatg 2700 atctgacaaa gtgtgtgtat gatcaaaatg tgcatttctt gaattctagc cgtatcatca 2760 cttggcacga caagattgtg atcgcaaagc ttattcatca ttccaccacc ctttccacta 2820 agccctagac aaagcatatt aagttctttt gcttttttaa aagcttctaa aacattaggg 2880 ctttttccac tggttgaaat accgattaaa acatcatttt catttcctaa agcttccact 2940 tgtcttgaaa aaacaaattc aaaaccatag tcatttccta tagcactaag tgctgaagta 3000 tcggttgtaa gcgctatacc tgctaaagcc ttgcgttctt ttttataacg cccgctaagt 3060 tcagccgcaa aatgctgagc atcagctgcg cttccaccat ttccgcaaat caaaatcttg 3120 ccgccttttt taagacattc gcacaaaagt tcgcctactt tagcgatttg tccttttaaa 3180 atttcactgg cttgagctat tttttgatgt tcttgccatt ctttttctac taaacttatc 3240 at 3242 // |
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