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EBI DbfetchID AY358024; SV 2; linear; genomic RNA; STD; VRL; 7081 BP. XX AC AY358024; XX DT 28-AUG-2003 (Rel. 77, Created) DT 29-AUG-2003 (Rel. 77, Last updated, Version 2) XX DE Guanarito virus strain INH-95551 segment L, complete sequence. XX KW . XX OS Guanarito virus OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus; OC New world arenaviruses. XX RN [1] RP 1-7081 RA Bowen M.D., Thurman K., Minor E., Meyer R.F., Malfatti S.A., Do L.H., RA Smith K.L., McCready P.M., Chain P.S.G.; RT ; RL Submitted (01-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL Viral Sequencing Group, Lawrence Livermore National Laboratory, 7000 East RL Avenue, Livermore, CA 94550, USA XX CC On Aug 27, 2003 this sequence version replaced gi:33868615. XX FH Key Location/Qualifiers FH FT source 1..7081 FT /organism="Guanarito virus" FT /segment="L" FT /strain="INH-95551" FT /mol_type="genomic RNA" FT /note="large segment" FT /db_xref="taxon:45219" FT primer_bind 1..20 FT CDS 75..362 FT /codon_start=1 FT /product="Z protein" FT /note="zinc finger protein" FT /db_xref="GOA:Q6UY71" FT /db_xref="InterPro:IPR003224" FT /db_xref="UniProtKB/Swiss-Prot:Q6UY71" FT /protein_id="AAQ55253.1" FT /translation="MGNSKSKSNPSSSSESQKGAPTVTEFRRTAIHSLYGRYNCKCCWF FT ADKNLIKCSDHYLCLRCLNVMLKNSDLCNICWEQLPTCITVPEEPSAPPE" FT misc_feature 368..455 FT /note="hairpin intergenic region" FT CDS complement(455..7051) FT /codon_start=1 FT /product="L protein" FT /note="L polymerase" FT /db_xref="GOA:Q6UY70" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="InterPro:IPR014386" FT /db_xref="UniProtKB/Swiss-Prot:Q6UY70" FT /protein_id="AAQ55254.1" FT /translation="MDEKVFVLKDFIRRQVPDIPELSYQKEALLSQVEVPMVLTEGFKL FT LSCLVEIESCRKNSCECNFEQKFVDTILSENGVVAPTLPKVIPDGYRFFNKTLILLETF FT VRVNPEEFEKKWKTDMAKLLSLKEDIHRTGITLVPVVDGRGNYNTDLLPDWATERFRWL FT LIDLLRESRGAPTMEIEDQEYHRLIHSLSKTSNQSLGFENIECLKRVHLNYEERLNEQL FT LKDIVGEVRESKIREELIKLKTWYREEIYRKGLGNFVQTDRKSLLQTLVLSSAHSDSLA FT PECPMCCSKILDLCYQLSMRIANQTSLENNFDEPPLPTTQIEKVYLSLLSACNKIKGKK FT VFNTRRNTLLFLDLIILNFVAHVYKTQPSEMETLKKAGLIIGEMLLLPNDRVLDILVAR FT RLLLKKVESCCNWLDRCRHLLRKEEPVLWDCVSEFTNVPDFELLLSLAEELCSEKPVMH FT YKPPSSLIGDCAHKDLMSMSDGEFESLFKCLSHISLSLVNSMKTSFSSRLLVNEKDYKR FT YYGTVRLKECYVQRFFLRVGLYGLLFYQKTGEKSRCYSLYLSDKGNLVELGSFYSDPKR FT FFLPIFSEFVLLATCAEMLSWLDFDEKLVDAVTPLLKILVLSILSSPTKRSQTFLQGLR FT YFIMAYVNQAHHIQLMSKLAVECKSASDVLIQRLSVKIVDMVLSDGSDPDMHMTRKFKF FT VLNVSYLCHLITKETPDRLTDQIKCFEKFMEPKLEFGSLIVNPSLNGFLSKEQEDVMIE FT GVEKFFSKELLTVEDLKRPGVSRELLSYCVSLFNKGRLRVNGTLGTDPYRPSFTSTALD FT LSSNKSVVIPKLNEVGEIVSEYDKQKLVSTCITSMAERFKTKGRYNLDPDTIDFLIMRN FT LTNLLSARKLDSSKKEELSLLYEHLSEDVMKAFEEIKYEVEITLSKMRLSRELECGHKK FT PCTLEGVWAPFNVLKVIRSETSVHEIRDFDPDLLGEDVYEKLCVAVYDSPLRPTFFLEK FT PLDICPLELLLKNLTTKSYEDDEFFDCFKYILIQAGFDQRLGAYEHKNRSRLGLSEEAF FT RLKEDVRVSNRQSNSEAIADRLDKSFFTSAALRNLCFYSEESPTEYTCISPNVGNLKFG FT LSYKEQVGSNRELYVGDLNTKMMTRLVEDFTEAVANSMNYTCLNSEKEFERAICDMKMA FT VNNGDLCCSLDHSKWGPFMSPALFHAFFGALKFKISKTGEQVDLGPVLNVLKWHLHKAV FT EVPISVAEAYCTGMLKRRLGLMSLSCQSVCEEFFHQKLLLEEGVPSHIMSVLDMGQGIL FT HNSSDLYGLITEQFINYCLDFLFDVIPVSYTSSDDQITTFKLPTMSSSEDGLDGFDWLE FT LLCFHDFLSSKFNKFVSPKSVSGTFVAEFKSRFFVMGEETPLLTKFVSAALHNVKCKTP FT TQLAETIDTICDQCVANGVGIEIVTKISERVNRLIRYSGYPQTPFLAVEKQDVKDWTDG FT SRGYRLQRNIEHYLQGSEQLEFVRKCAKKVLLKIKKGQVFEEYLVQLIGKDGDDALKGF FT LSYAGCESDEIKDVLKYRWLNLSANGDLRLVLRTKLMSTRRVLEREQIPTLIKTLQSKL FT SKNFTKGVKKILAESINKSAFQSSVASGFIGFCKSMGSKCVRDGSGGFMYIREVLNKQR FT VCPCEICAQNPGIIFCSDALTLIPEFSRSILWDYFSLVLTNACELGEWVFSSVQPPKVP FT ILLNNPNLFWAVKPRGTRLIEDQLGLGHVLQSVRRSYPKVFEEHLVPFMNDLQVSRTTD FT FTRLRYLDVCVALDMMNENLGIVSHLLKAKDNSIYIVKQSECAVAHIRQVEYVNQELGL FT SPQQICSNFKIQLVFSSMINPLVITTSVLKSFFWFNEVLNLEDESQIDVGELTDFTILI FT KKYNLNRAMMLDDLTMGYVVSTISEPTIHLVSLKRNSNSIVGEQNSEMLHGEQVEDMYS FT IVLHIQLEHKRHSTKYHLSRTVVYSYTVECETNITDIEKEPSLATVKNVVLRASGSIEG FT HQFLDGVNLVASQPIFTGKKVINLSELLADSEITETYKEGDAVGSILLNFGTFYEHIDD FT RYAYEIVGPECSDSPLVLDGGSILADGKKLSSIKVELTGDVILKALGALESEKEVQSLL FT TGLWPFIRINNLKVKMAQEDFLLMYEMHRESLLKSLEVFSEWCEFVDFSVCYSKSLRDL FT VISDSSGSLRLKGITCKPINLSNSVTEIE" FT primer_bind complement(7063..7081) XX SQ Sequence 7081 BP; 2085 A; 1604 C; 1206 G; 2186 T; 0 other; gcgcacagtg gatcctaggc gtaactttca cgcctataag ttgagatttt cacaacttga 60 acccatttac aaacatgggc aattcaaaat ctaaatccaa cccatccagt tcctcagagt 120 ctcaaaaagg ggcaccaaca gtcacagaat ttaggaggac tgccattcac agtctctatg 180 ggaggtacaa ctgcaagtgt tgctggtttg ctgacaagaa tctgattaaa tgctctgatc 240 attacctctg cttgaggtgt ttaaatgtca tgctgaaaaa ctctgatctt tgcaacattt 300 gttgggagca gctgcccaca tgcatcacag ttccggagga gccaagcgct ccaccggaat 360 gaatgcgggt ggcgtagatc atcactccca cccccggggg ccccagtggg gcccccaccg 420 gggatgcccg ggggtgttgc tggtcctctg tggcctactc aatttcggtg actgaatttg 480 acagattgat gggtttacag gtgatgcctt tgagcctcag gctgccggag ctgtctgata 540 tcaccaagtc ccttaaagat ttgctatagc agacactaaa gtccacaaac tcgcaccatt 600 cgctgaagac ctcaagagat tttaacaatg attccctgtg catctcatac attaaaagga 660 agtcctcctg agccatcttc acttttagat tgtttattct aatgaatggc cacaaccctg 720 tcagcaggct ttgcacttcc ttttctgatt ctagggcccc taatgccttt aggatgacat 780 ccccagtgag ttcgactttt atgctggaaa gctttttgcc atcagctaag atagagcctc 840 catcgagcac tagaggggaa tcggaacact caggccccac aatttcataa gcatatctgt 900 cgtcaatatg ttcataaaat gtaccaaagt ttagaagaat tgatcccact gcatcgccct 960 ctttgtatgt ttctgtgatt tctgagtcag ccagcagctc acttaggttt atgacttttt 1020 tccctgtgaa tataggctgg gaagcaacaa ggttaacacc atctaaaaat tgatggccct 1080 cgatggatcc agatgctctc agcaccacat tctttacagt tgctaagctt ggttctttct 1140 caatgtcagt gatgttagtc tcacattcaa ctgtgtaaga ataaacaact gttcttgata 1200 aatggtactt tgttgaatgc cttttgtgct caagttggat gtgcagcact atggaataca 1260 tatcttccac ttgttctcca tgaagcattt cagagttttg ttcacccaca attgaatttg 1320 agtttctttt aagtgaaact aaatgtatgg tgggctcact aattgttgac accacataac 1380 ccattgttaa atcatccagc atcattgctc tattcaagtt gtactttttt atcagtattg 1440 taaagtcagt gagctcaccg acatcaatct gactttcatc ttctagattc aaaacctcat 1500 taaaccagaa gaaagacttt agcacagatg ttgtaataac taaaggatta atcatagatg 1560 aaaagaccaa ctgtatttta aaattactgc aaatctgttg agggcttaac cctaattcct 1620 gatttacata ttcaacttgt cttatatgtg cgacagcaca ctcactttgt ttaacaatat 1680 atattgaatt atcctttgcc ttcaacagat gagacacaat tcccaaattt tcattcatca 1740 tgtcaagagc aacacacaca tctaagtacc tcagtcttgt gaaatcagta gtgcgactaa 1800 cctgtaggtc attcatgaac ggtactaagt gctcttcaaa aactttaggg taactcctcc 1860 ttactgattg caatacatga cctaatccta attgatcttc aattaaacgg gttcctctag 1920 gtttaacagc ccaaaagaga ttggggttat ttagtagaat gggcactttt ggaggttgta 1980 ctgaagagaa cacccattct cctaactcac aggcatttgt taacaccaga gaaaaataat 2040 cccataatat tgatctcgaa aattctggta ttaaggtcaa tgcatcagaa caaaaaatga 2100 tcccagggtt ttgtgcacat atctcacagg gacataccct ctgcttattt aaaacctcac 2160 gaatgtacat gaaacctcca ctgccatctc taacacactt gctacccata ctcttacaaa 2220 aaccgatgaa acctgaagca acagatgatt ggaacgctga cttgttgatt gattctgcca 2280 gaattttctt gactcctttt gtaaaatttt ttgagagttt tgactgtaac gtcttgataa 2340 gagttggaat ttgctctctt tcaagcaccc ttcttgttga cataagtttt gtcctcaaca 2400 caagccttaa gtcaccattt gcagataaat ttagccagcg gtacttaagg acatccttaa 2460 tttcatctga ttcacagcct gcataagaca aaaagccttt caaagcatca tccccatctt 2520 tccctattag ctgaactaag tattcctcaa aaacttgccc tttctttatt tttaacaaaa 2580 ccttttttgc gcacttcctc acaaattcca attgttcact cccttgtagg tagtgttcaa 2640 tattcctttg taatctgtaa cctcttgagc catcagtcca gtccttaaca tcttgttttt 2700 caacagcaag aaagggcgtt tgagggtaac cagagtacct aattaacctg ttcactcttt 2760 ctgatatttt tgtgacaatt tcaattccga caccattagc cacacattga tcacaaatcg 2820 tatcaatagt ttcagcaagt tgtgttggag ttttacactt gacattatgc aatgctgcag 2880 atacaaactt ggttaacaga ggtgtttcct cacccatgac aaagaacctt gatttaaact 2940 cagcaacaaa agtcccagaa acactcttgg ggctcacaaa tttgttgaat tttgaggaca 3000 aaaaatcgtg gaaacataaa agctctaacc aatcaaaacc gtctaaccca tcttcacttg 3060 aagacatagt tggcaatttg aacgttgtga tctgatcatc actagacgtg taagacaccg 3120 gtatcacgtc aaagaggaaa tccaaacagt agtttatgaa ttgctcagta atcaaaccat 3180 aaagatcaga tgaattgtga agtatgccct gtcccatgtc taagacagac ataatatgac 3240 tgggcactcc ttcttctaat aataatttct ggtgaaagaa ctcttcacac actgattggc 3300 agcttaaact cattaaaccc aaccttcttt tcaacatgcc tgtgcaatat gcctcagcaa 3360 cactgattgg tacttctaca gctttatgta aatgccactt taacacattt agaactggcc 3420 cgagatctac ttgttcacct gtcttactaa ttttaaactt aagagctcca aagaatgcat 3480 gaaaaagagc tggactcatg aaagggcccc attttgaatg atctagagaa cagcacaggt 3540 ccccattgtt cacagccatc ttcatatcac agattgccct ctcaaactct ttttcagagt 3600 taagacatgt gtaattcatt gagttagcca ctgcctcagt aaagtcttca actaatcttg 3660 tcatcatctt tgtgtttaag tcacctacgt aaagttctct atttgaacca acttgctctt 3720 tgtaactcaa accaaatttc aaattaccca catttgggct aatacatgtg tactctgttg 3780 gggattcctc cgaataaaag cacaagttcc ttagagcagc actggtgaag aaactcttgt 3840 ctagtctgtc agctatggct tctgaattac tctgtctatt gctcactctc acatcctcct 3900 ttagcctaaa agcttcctct gagagcccca atctggacct atttttatgt tcataagccc 3960 ctaacctctg atcaaatcct gcttgaatca ggatgtactt gaaacaatca aagaattcat 4020 catcttcata agattttgtt gttaagtttt tcagtaggag ttccaatgga cagatgtcaa 4080 gaggcttttc caaaaagaag gtaggtctta atggagaatc ataaacagcc acacataact 4140 tttcatagac atcttccccc aagaggtcag gatcaaaatc cctaatttca tgaacacttg 4200 tctcactcct aattactttc aagacattga agggtgccca cacaccttcc agtgtacatg 4260 gttttttgtg gccacactca agttcccttg agagcctcat tttgcttaaa gtgatctcaa 4320 cttcatactt tatctcttca aatgctttca tgacatcttc agacaagtgc tcatataaca 4380 atgacaactc ttccttcttg ctgctgtcaa gttttcttgc agacaaaaga ttagtcaagt 4440 tcctcataat cagaaagtcg attgtatcgg gatctagatt ataccttccc tttgtcttaa 4500 atctttctgc cattgaagta atgcaagtgg aaaccaattt ttgtttgtcg tattccgaca 4560 caatctctcc cacttcgttt aatttcggaa taacaacact cttgttgcta gataagtcta 4620 atgcagtgct tgtgaaactg ggtctatagg ggtctgtacc caatgtacca ttaactctta 4680 gccttccctt gttaaaaagt gacacacaat aactcagtag ctctctagaa acccctggtc 4740 tctttaaatc ttccacagta agaagctctt ttgagaagaa cttctctaca ccctcaatca 4800 tgacatcttc ttgttcctta gacagaaagc catttaaaga tgggttaaca atgagactac 4860 caaactctag ttttggttcc atgaatttct caaaacactt aatttgatct gtgagtctat 4920 ctggagtttc ttttgtgatc aaatgacata agtaacttac atttaagaca aacttaaact 4980 tcctcgtcat atgcatgtct ggatcagaac catcacttaa caccatatcc acaattttta 5040 cactaagcct ctgaattaaa acatctgagg ctgatttgca ttcaacagcc aacttgctca 5100 tcaattggat atgatgggcc tgattgacat acgccatgat gaaatacctt aatccttgta 5160 gaaatgtttg actccttttt gttggtgaac tcaatatact taaaaccagg attttcaata 5220 agggggttac tgcgtcaacc aacttctcat caaaatctaa ccagcttaac atctctgcgc 5280 atgtagctag aagcacaaat tcagagaata tgggcaaaaa gaatcgttta ggatcagaat 5340 aaaaagatcc aagttctaca aggttccctt tatcagaaag gtaaagggag taacaacgtg 5400 atttctcacc tgttttttgg taaaataaaa gcccatacaa gcctactctt aaaaagaacc 5460 tctgcacata gcattctttt aatctaactg tgccatagta tctcttataa tccttttcat 5520 ttactagaag tctggaagag aatgatgtct tcattgaatt tacgagagaa agtgatatat 5580 gcgacagaca tttaaataaa ctctcaaact ctccatctga cattgacatc aggtccttat 5640 gggcacaatc gccaatcaat gaacttggag gtttgtagtg cataacaggc ttctctgaac 5700 agagctcctc agctaaagat agcaacaact caaagtctgg aacatttgtg aactctgaca 5760 cacagtccca tagaacaggc tcttctttcc ttaacaaatg tctacacctg tccaaccaat 5820 tgcagcagga ctcaactttc ttcaatagaa gcctccttgc aaccaaaata tctaaaaccc 5880 tgtcgttggg aagtaataac atctcaccga taatcagacc tgcttttttc aaggtttcca 5940 tttcagaagg ttgtgtctta taaacatgtg ccacaaagtt caaaatgatt aagtccaaaa 6000 atagaagtgt gtttcttctg gtgttaaaca ctttctttcc ttttatctta ttgcacgctg 6060 ataacaatga cagataaact ttttctatct gggttgtggg aagaggaggt tcatcaaaat 6120 tattctccag tgatgtttgg tttgcaattc tcattgagag ttgataacat aagtcaagga 6180 ttttactaca gcacatggga cactcagggg ccaatgagtc agagtgggca ctcgacaaca 6240 ccaaagtctg tagtagggac tttctatctg tctgaacaaa attcccaagg cctttcctgt 6300 agatttcttc tctgtaccaa gttttcaatt tgatcaactc ttccctaatc ttggattccc 6360 taacttctcc cacaatgtct ttaagcaatt gctcattgag tctttcctca taattcagat 6420 gaaccctttt taagcattct atattttcaa acccgaggct ctgattactt gttttagaga 6480 ggctatgaat caacctatgg tactcctgat cctcaatctc cattgtagga gctcctcttg 6540 attctctcag cagatcaata agcaaccatc tgaatctttc agtcgcccaa tctggcagca 6600 aatctgtgtt gtagttgcct ctaccgtcaa ccacaggaac cagtgtaata cccgttctgt 6660 gaatgtcctc ttttaaacta agcaattttg ccatgtcggt tttccacttc ttttcaaact 6720 cttcaggatt cacacggaca aatgtttcaa ggagtatcaa tgtcttattg aagaacctgt 6780 aaccgtcagg tatcaccttt ggtagtgtgg gtgcaaccac cccattttca gagagtattg 6840 tatcaacaaa tttctgttca aagttgcact cacaagaatt cttcctgcag gattcaatct 6900 cgaccaggca tgataggagc ttgaagccct ctgttaagac cattggtact tcgacttgag 6960 aaagtaatgc ctccttctga taagacagtt caggtatgtc aggcacttgt cttctgataa 7020 aatctttcaa aacaaagact ttttcatcca ttgtcaaatt tcgcctagga tccactgtgc 7080 g 7081 // |
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