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EBI DbfetchID AY241925; SV 1; linear; genomic DNA; STD; INV; 5584 BP. XX AC AY241925; XX DT 01-JUN-2003 (Rel. 76, Created) DT 01-JUN-2003 (Rel. 76, Last updated, Version 1) XX DE Caenorhabditis elegans chondroitin disaccharide polymerase (sqv-5) gene, DE complete cds; alternatively spliced. XX KW . XX OS Caenorhabditis elegans OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; OC Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-5584 RX DOI; 10.1038/nature01634 RX PUBMED; 12761549. RA Hwang H.Y., Olson S.K., Esko J.D., Robert Horvitz H.; RT "Caenorhabditis elegans early embryogenesis and vulval morphogenesis RT require chondroitin biosynthesis"; RL Nature 423(6938):439-443(2003). XX RN [2] RP 1-5584 RA Hwang H.Y., Horvitz H.R.; RT ; RL Submitted (22-FEB-2003) to the EMBL/GenBank/DDBJ databases. RL Biology, Massachusetts Institute of Technology, 77 Massachusetts Ave, RL Cambridge, MA 02134, USA XX FH Key Location/Qualifiers FH FT source 1..5584 FT /organism="Caenorhabditis elegans" FT /chromosome="I" FT /mol_type="genomic DNA" FT /db_xref="taxon:6239" FT gene 1..5584 FT /gene="sqv-5" FT mRNA join(1..402,1278..1960,2400..2883,3132..3559,3760..4105, FT 4156..4233,4748..5584) FT /gene="sqv-5" FT /product="chondroitin disaccharide polymerase" FT mRNA join(1..402,1284..1960,2400..2883,3132..3559,3760..4105, FT 4156..4233,4748..5584) FT /gene="sqv-5" FT /product="chondroitin disaccharide polymerase" FT CDS join(394..402,1278..1960,2400..2883,3132..3559,3760..4105, FT 4156..4233,4748..4930) FT /codon_start=1 FT /gene="sqv-5" FT /product="chondroitin disaccharide polymerase" FT /note="GalNAcT-I, GlcAT-II, GalNAcT-II in chondroitin FT backbone polymerization; SQV-5; alternatively spliced long FT form" FT /db_xref="GOA:Q7Z1Z1" FT /db_xref="InterPro:IPR008428" FT /db_xref="UniProtKB/TrEMBL:Q7Z1Z1" FT /protein_id="AAO85274.1" FT /translation="MRVFQRSTCRMPVSRATVTILLGILFGFSITYYLTALKSLTNPII FT CGPEQQIGGFDYLDVISQRADADVFTRSQSLPGHRRGLILVAIMTAAKYVDTRAYNVWK FT TWAQHIPGRVLIFVAEGTESVHEDMPLIRLKGVDDTYPPQKKSFAMVKWLAENMADEYD FT WFLRADDDLYIRGEELALFLRSVDSSKAHIIGQAGLGNSAEYGLLALGSTDNYCMGGPG FT IVMSRDTLLKVSPHLESCLQHMLTSHEDVELGRCIRKHVGVACTWNYEMQKLFHNNQSA FT IKESYAKNMKELKDAITLHPIKDPAVMRKVHLRNREIKLREARAKRSLLSSELSTAKAQ FT TLVRMTPNRTNDLTPWEYINNNKILFCADRVNCPRHTVDLSIRTEMADTITQLFDEFNT FT NARQRGRVLQFQSLQYGYMRVEPTKGVDYVLDMLLWFKKFRPPNRTTISVRRHAYVQQT FT FGKLRSLSEGVFRSNMRANSTLIEDPTLHMIMPLRGRAAIFARFAQHLKSICARGGDDL FT AVSLTIVLYSSEDEMENRETIEMLRASFIPVTVIEMGDVSFSRGVALMRGAETLPANAL FT LFFTDVDMLFTCDALKRIKSNTILNAQIYFPIVFSEFSHESWSENDKLLADAFHYGRGR FT GYFRHFGYGLAAMYKADLMDVGGFDTKIEGWGKEDVDLFEKAIKNGRLRVIRVPEPGLV FT HIYHPIHCDENMPTAQKDMCHGSKAASLASIDTLVEQIAQYT" FT CDS join(394..402,1284..1960,2400..2883,3132..3559,3760..4105, FT 4156..4233,4748..4930) FT /codon_start=1 FT /gene="sqv-5" FT /product="chondroitin disaccharide polymerase" FT /note="GalNAcT-I, GlcAT-II, GalNAcT-II in chondroitin FT backbone polymerization; SQV-5; alternatively spliced short FT form" FT /db_xref="GOA:Q7Z1Z2" FT /db_xref="InterPro:IPR008428" FT /db_xref="UniProtKB/TrEMBL:Q7Z1Z2" FT /protein_id="AAO85273.1" FT /translation="MRVRSTCRMPVSRATVTILLGILFGFSITYYLTALKSLTNPIICG FT PEQQIGGFDYLDVISQRADADVFTRSQSLPGHRRGLILVAIMTAAKYVDTRAYNVWKTW FT AQHIPGRVLIFVAEGTESVHEDMPLIRLKGVDDTYPPQKKSFAMVKWLAENMADEYDWF FT LRADDDLYIRGEELALFLRSVDSSKAHIIGQAGLGNSAEYGLLALGSTDNYCMGGPGIV FT MSRDTLLKVSPHLESCLQHMLTSHEDVELGRCIRKHVGVACTWNYEMQKLFHNNQSAIK FT ESYAKNMKELKDAITLHPIKDPAVMRKVHLRNREIKLREARAKRSLLSSELSTAKAQTL FT VRMTPNRTNDLTPWEYINNNKILFCADRVNCPRHTVDLSIRTEMADTITQLFDEFNTNA FT RQRGRVLQFQSLQYGYMRVEPTKGVDYVLDMLLWFKKFRPPNRTTISVRRHAYVQQTFG FT KLRSLSEGVFRSNMRANSTLIEDPTLHMIMPLRGRAAIFARFAQHLKSICARGGDDLAV FT SLTIVLYSSEDEMENRETIEMLRASFIPVTVIEMGDVSFSRGVALMRGAETLPANALLF FT FTDVDMLFTCDALKRIKSNTILNAQIYFPIVFSEFSHESWSENDKLLADAFHYGRGRGY FT FRHFGYGLAAMYKADLMDVGGFDTKIEGWGKEDVDLFEKAIKNGRLRVIRVPEPGLVHI FT YHPIHCDENMPTAQKDMCHGSKAASLASIDTLVEQIAQYT" XX SQ Sequence 5584 BP; 1782 A; 1012 C; 964 G; 1826 T; 0 other; agctttctgc tcaaagttcc aacacgagga gcggcggtgc ggtgcgattc gcgacgaaaa 60 tcaatgaatc agagtgccat ctgacgtgca attatatgtc gccacctgct catcttctca 120 gtgttaatca tcttcatcaa atccacgaga agttcatcac aatcatctca ctacgaccac 180 caacatcatc agcaacaaca aaacacctga cgaacacacc acactatcca gtgcaaacgt 240 tcagcagaaa aaacacagaa aataacaaaa ataacagtga gaaccatcat cagtcgattt 300 tggatcggag gaggagagaa ggcggcggac gaggagacgc agacactctt gctcgacgac 360 tcatccggta atcgagaaga cacggaagag agtatgcgag tggtgagtca ttttttgata 420 taattctaaa atcaaaagaa atatgattca tttatgcata acggggtcag cagatgaatg 480 acaccagttt cttcataatg aacaaatttt ggtcaacaat aggcctgagt ttacgtgatt 540 gtcgaaaaat taaaataaaa gcctgttttt tcttctataa aaattcccag atctgaaaat 600 tcgtcatttt tgttccaaga aatacggtac ccggtttcga agcgaccgat tttctcaaat 660 gtaaaagagt gtgctccttt aaggagtact gtagtctcca gtttttttaa aactgttcaa 720 tttttctgtt tttctagagc taatcgaaaa attgtaaatt tctgcttaaa attttttaaa 780 ttgaaatcca gtttttgatt attcggaaaa tcgaaaaaaa attttaaaat aataaaaaca 840 tttcaaattt taacaaaaaa taatttgata cgaggaaaaa agcccaaaat ttgaagtgat 900 ttttttcgaa aactcgtaaa atttaaaatc caaaaatagt gtgcgcttta aaggagtact 960 gtagttccca actgctcgaa aaaactttct ttgatgtctc ataagtttca ccctccaaat 1020 tttcttcttt ttttttcaac aattaataaa acatcgaaga aaattccgca gtgagaagat 1080 gagaactaca gtactcttta aaggcgcaaa ctttttttta aaccgaaaat agagtgtttt 1140 aggttttttt tttgttacag aaaaaaataa aattcctaaa atctctgaaa tttctgggaa 1200 aattttttat ttcagatttg aataaactaa aagttttata aaaattaaaa tgctcacatt 1260 gtttaatcta ttgtcagttt cagcggagca catgcagaat gccggtctcc cgagccaccg 1320 tcacaatcct actcggaatc ctgtttggtt tctcaatcac ttactatctg acggctctca 1380 aatctctgac aaatccaata atctgtggcc cagaacaaca aattggcggt ttcgattatc 1440 tcgatgtgat aagtcaacgt gctgatgctg atgttttcac aagatcccaa agtcttcccg 1500 gtcatcgaag gggtctgatt cttgtggcta ttatgactgc tgcaaaatac gttgatacac 1560 gtgcttataa tgtttggaaa acatgggctc aacacattcc cggacgagtt ttaatatttg 1620 ttgccgaagg aactgaatca gtgcatgagg atatgccatt aattcgtctg aaaggagttg 1680 atgatactta tccaccacag aagaaaagtt tcgcaatggt aaaatggttg gcagagaata 1740 tggctgatga atatgattgg ttcttgcgag cagacgacga cctctacatt agaggagaag 1800 agctcgcttt attcctaaga tctgtcgatt catccaaagc tcatatcatc ggacaggctg 1860 gacttggtaa cagtgcggaa tatggtcttc tagctcttgg atctaccgat aattattgta 1920 tgggaggacc tggaattgtt atgagcaggg acaccttatt gtacgttgtt tttaagagaa 1980 tttgtggggg ttttgtcaaa ataactgaaa ctgacttctc aacaaatttc caaattttgc 2040 taaaatctaa aatttcgtca tttttccttg ttgcagctgc tgaaatacag ttttattaaa 2100 ttatcactct ttcattgagt aatttggtag tttatctcgc actaattcga cgatttagtc 2160 acaaatcgaa tttatagtta aaatatgcaa gaaaaaaaga tttttgataa caactatatt 2220 tcagcttcta caacagggac aaattgatga aatttaagat ttgagcaaaa tttggaaatt 2280 ttttgagaat tctcactatg aaattcgact gtttcggggc agttttaatc tatttgatga 2340 aaaactcaaa ccttttctct ctttcagtga taacaattat aatattatat atttttcaga 2400 aaagtatctc ctcatctcga atcatgcctc caacacatgc tgacttctca cgaggacgtc 2460 gaactcgggc ggtgtattcg aaaacatgtc ggtgtagctt gcacgtggaa ttatgaaatg 2520 caaaagttgt tccataataa tcaaagtgca atcaaggagt catatgcaaa aaatatgaaa 2580 gaattgaaag atgcaattac tcttcatccg attaaagatc cagctgtaat gaggaaggtt 2640 catcttcgaa atcgagaaat taaacttcgt gaagcacgag ctaaacgaag tcttttgagt 2700 tcggagctca gtactgcaaa agcacagaca ttggtacgaa tgacaccgaa tagaacgaat 2760 gatttgacac catgggaata tattaataac aataaaattc tgttttgtgc ggatcgggtc 2820 aattgtcctc ggcatactgt agatttgagt attcggacgg aaatggccga cactatcaca 2880 caggtttgtt caaaattcag atcaagtatt gaaattttta aatgcttttt tcgaattttc 2940 ggaaaatcgg aaactcaaaa attttcgtat gtctatttcc aaattttctg gatgctacag 3000 tacttcttaa aggcgcacac tcttttacgc tataaaatcg gccgtgtcga gactgagttc 3060 cgtattttta aagcaaaatt cgcaaaaaca ttcgagtaaa taatttttcc aaaaaactat 3120 cccattttca gttattcgac gagttcaaca caaatgctcg ccaaagaggt cgtgttcttc 3180 aatttcaaag tcttcaatat ggatacatgc gtgttgaacc tacaaaagga gtcgattatg 3240 ttcttgacat gttactttgg ttcaaaaagt tccgtccacc aaacagaaca acaatttccg 3300 ttcgaagaca cgcgtatgtt caacaaacat tcggaaaact tcgaagtctc tctgaaggag 3360 tgttccgatc aaatatgaga gcaaactcta cacttattga agatccaaca ttgcatatga 3420 ttatgccatt aagaggaaga gctgccatat ttgcaagatt tgctcaacat ttgaagagta 3480 tttgtgcgag aggaggagat gatttagctg tttcattgac aattgtatta tactcgagtg 3540 aagatgaaat ggagaatagg taagttttgg aaattttaaa atctacctat ttcggaatga 3600 aaatccaatt tataaatcaa aaatgaatgt gtttacaaat atcgaacaaa atttaattga 3660 ttcgaaagaa agaataattt ttggtctaat tggatctcaa aaactttgag ctctagaaga 3720 aatttttaaa acccaattgg gatattttat aatttacaga gaaacgattg aaatgctccg 3780 tgcaagcttc atcccagtaa cagtaatcga aatgggtgat gtttcattct cacgtggtgt 3840 tgctcttatg cgtggagctg aaactcttcc agccaatgct cttctattct ttactgatgt 3900 tgatatgcta ttcacatgtg atgcattgaa acgtataaaa tcgaatacaa ttctcaacgc 3960 acaaatctac ttcccgatcg ttttttctga attctcacat gagagttggt ctgaaaatga 4020 caagttattg gctgacgcct tccattatgg acgtggacgt ggatatttta gacattttgg 4080 ttatggtctc gcagcgatgt acaaggtaag atattttgag aaaatatttt ttcttcaata 4140 aatttttaat ttcaggcgga tttgatggat gtcggagggt ttgacacaaa gatcgaagga 4200 tggggaaagg aagatgttga cttgtttgag aaggtaatac acaagaccag gaatgcaaat 4260 tcaaaaaatc gcaaacatcc acttttcagt gtgtctaaag aatgatctgt aaaacctaca 4320 aaaatctttt tttatgttta gaataaattt gaagcttctc tgaaatatct cttttagaaa 4380 tattttctgc gacttcattt tgacaaaata aaaactggga gtttgtagtt ttttaaaatt 4440 ttttccattt ttttcgaaaa attttccatg cagaattaaa tacgcatgtt acagaaattc 4500 aactttcttc tttttgcaaa accccaaaaa tagtttttaa agtttttttg atttattttt 4560 gagtcaatgc aaaaaaccgg caggccccga gggataatcc ataaaaccta caaaattcaa 4620 ttttctgaat attcctaatt tagagcgtct ccgaagttga agaagttttg agtatttttt 4680 gtaatttttt ttgatttctt acctgtacac aacattgtat tttcttaaca aactccaaat 4740 ttttcaggca atcaaaaacg gtcgtctccg agtgattcga gtccctgaac ctggacttgt 4800 tcacatctat cacccaattc attgcgatga aaatatgcca actgctcaaa aggatatgtg 4860 ccatggttca aaagcagcaa gtcttgcttc aattgataca cttgtcgagc agattgccca 4920 gtacacatga tagccttgcc ggttttccac ctctatcttc ccgttttttc tttctcaatt 4980 ttcgaattct ttccgttttt atgaatacgg ttgtccctca gttttcatcc gggtaattat 5040 tgtttctttg atttgtttta tccacttctc acactcactt ttcccccaaa attcctttat 5100 tgcatccatt tgattaatca cgattattat atattttcta ttccccggtt gagttttacc 5160 attttccatc ataatttcct aacattgcca ttttcacaag aagcacacgg agcttgcccc 5220 catttgaagt tcaaatttca aattaattaa ttcagttcat gtcaaataat ataatagttc 5280 agttaatgac ctattttgaa acgagtaatt gtcccatgct cccctataaa gctcagcctt 5340 tcattgttca aatgtttatt tcacttaaaa cattattgat tgttcttcgc tttaaattcc 5400 ttaattcaat tgttttcttt catattaata tgagatttcc atcaaatctt tgattgtttc 5460 tagctttaca caattgtctc accatcatca ttttgtccat tctgttgcca tttctcttcc 5520 cccaactaca acaagcatcg gtgttctgtg cttactcgaa ataaattaat tgattgcaga 5580 gtgt 5584 // |
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