EBI Dbfetch

ID   AY228551; SV 1; linear; genomic DNA; STD; PRO; 1086 BP.
XX
AC   AY228551;
XX
DT   08-MAY-2003 (Rel. 75, Created)
DT   05-AUG-2003 (Rel. 76, Last updated, Version 2)
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DE   Actinobacillus actinomycetemcomitans DspB (dspB) gene, partial cds.
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KW   .
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OS   Aggregatibacter actinomycetemcomitans
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales;
OC   Pasteurellaceae; Aggregatibacter.
XX
RN   [1]
RP   1-1086
RX   DOI; 10.1128/JB.185.16.4693-4698.2003
RX   PUBMED; 12896987.
RA   Kaplan J.B., Ragunath C., Ramasubbu N., Fine D.H.;
RT   "Detachment of Actinobacillus actinomycetemcomitans biofilm cells by an
RT   endogenous beta-hexosaminidase activity";
RL   J. Bacteriol. 185(16):4693-4698(2003).
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RN   [2]
RP   1-1086
RA   Kaplan J.B., Fine D.H.;
RT   ;
RL   Submitted (03-FEB-2003) to the EMBL/GenBank/DDBJ databases.
RL   Oral Biology, New Jersey Dental School, 185 S. Orange Ave., Newark, NJ
RL   07103, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1..1086
FT                   /organism="Aggregatibacter actinomycetemcomitans"
FT                   /strain="CU1000"
FT                   /serotype="f"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:714"
FT   gene            <1..1086
FT                   /gene="dspB"
FT   CDS             <1..1086
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="dspB"
FT                   /product="DspB"
FT                   /note="family 20 glycosyl hydrolase"
FT                   /db_xref="GOA:Q840G9"
FT                   /db_xref="InterPro:IPR001540"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="InterPro:IPR015883"
FT                   /db_xref="InterPro:IPR017853"
FT                   /db_xref="PDB:1YHT"
FT                   /db_xref="UniProtKB/TrEMBL:Q840G9"
FT                   /protein_id="AAP31025.1"
FT                   /translation="NCCVKGNSIYPQKTSTKQTGLMLDIARHFYSPEVIKSFIDTISLS
FT                   GGNFLHLHFSDHENYAIESHLLNQRAENAVQGKDGIYINPYTGKPFLSYRQLDDIKAYA
FT                   KAKGIELIPELDSPNHMTAIFKLVQKDRGVKYLQGLKSRQVDDEIDITNADSITFMQSL
FT                   MSEVIDIFGDTSQHFHIGGDEFGYSVESNHEFITYANKLSYFLEKKGLKTRMWNDGLIK
FT                   NTFEQINPNIEITYWSYDGDTQDKNEAAERRDMRVSLPELLAKGFTVLNYNSYYLYIVP
FT                   KASPTFSQDAAFAAKDVIKNWDLGVWDGRNTKNRVQNTHEIAGAALSIWGEDAKALKDE
FT                   TIQKNTKSLLEAVIHKTNGDE"
XX
SQ   Sequence 1086 BP; 351 A; 204 C; 238 G; 293 T; 0 other;
     aattgttgcg taaaaggcaa ttccatatat ccgcaaaaaa caagtaccaa gcagaccgga        60
     ttaatgctgg acatcgcccg acatttttat tcacccgagg tgattaaatc ctttattgat       120
     accatcagcc tttccggcgg taattttctg cacctgcatt tttccgacca tgaaaactat       180
     gcgatagaaa gccatttact taatcaacgt gcggaaaatg ccgtgcaggg caaagacggt       240
     atttatatta atccttatac cggaaagcca ttcttgagtt atcggcaact tgacgatatc       300
     aaagcctatg ctaaggcaaa aggcattgag ttgattcccg aacttgacag cccgaatcac       360
     atgacggcga tctttaaact ggtgcaaaaa gacagagggg tcaagtacct tcaaggatta       420
     aaatcacgcc aggtagatga tgaaattgat attactaatg ctgacagtat tacttttatg       480
     caatctttaa tgagtgaggt tattgatatt tttggcgaca cgagtcagca ttttcatatt       540
     ggtggcgatg aatttggtta ttctgtggaa agtaatcatg agtttattac gtatgccaat       600
     aaactatcct actttttaga gaaaaaaggg ttgaaaaccc gaatgtggaa tgacggatta       660
     attaaaaata cttttgagca aatcaacccg aatattgaaa ttacttattg gagctatgat       720
     ggcgatacgc aggacaaaaa tgaagctgcc gagcgccgtg atatgcgggt cagtttgccg       780
     gagttgctgg cgaaaggctt tactgtcctg aactataatt cctattatct ttacattgtt       840
     ccgaaagctt caccaacctt ctcgcaagat gccgcctttg ccgccaaaga tgttataaaa       900
     aattgggatc ttggtgtttg ggatggacga aacaccaaaa accgcgtaca aaatactcat       960
     gaaatagccg gcgcagcatt atcgatctgg ggagaagatg caaaagcgct gaaagacgaa      1020
     acaattcaga aaaacacgaa aagtttattg gaagcggtga ttcataagac gaatggggat      1080
     gagtga                                                                 1086
//