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EBI DbfetchID AY216519; SV 2; linear; genomic RNA; STD; VRL; 7106 BP. XX AC AY216519; XX DT 05-JAN-2004 (Rel. 78, Created) DT 10-JAN-2008 (Rel. 94, Last updated, Version 2) XX DE Cupixi virus strain BeAn 119303 segment L, complete sequence. XX KW . XX OS Cupixi virus OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus; OC New world arenaviruses. XX RN [1] RP 1-7106 RX DOI; 10.1016/j.virol.2003.08.016 RX PUBMED; 14698659. RA Charrel R.N., Lemasson J.J., Garbutt M., Khelifa R., De Micco P., RA Feldmann H., de Lamballerie X.; RT "New insights into the evolutionary relationships between arenaviruses RT provided by comparative analysis of small and large segment sequences"; RL Virology 317(2):191-196(2003). XX RN [2] RP 1-7106 RA Emonet S., de Lamballerie X., de Micco P., Charrel R.N.; RT "Complete sequence determination and analysis of the large RNA segment of RT arenaviruses"; RL Unpublished. XX RN [3] RP 1-7106 RA Charrel R.N., Lemasson J.-J., Garbutt M., Khelifa R., De Micco P., RA Feldmann H., de Lamballerie X.; RT ; RL Submitted (09-JAN-2003) to the EMBL/GenBank/DDBJ databases. RL Unite des Virus Emergents (EA3292, IFR48, IRD UR034), Universite de la RL Mediterranee, Faculte de Medecine, 27 Blvd Jean Moulin, Marseille 13005, RL France XX RN [4] RC Sequence update by submitter RP 1-7106 RA Emonet S., de Lamballerie X., de Micco P., Charrel R.N.; RT ; RL Submitted (10-MAY-2004) to the EMBL/GenBank/DDBJ databases. RL Unite des Virus Emergents (EA3292, IFR48, IRD UR034), Universite de la RL Mediterranee, Faculte de Medecine, 27 Blvd Jean Moulin, Marseille 13005, RL France XX CC On Jan 9, 2008 this sequence version replaced gi:37787731. XX FH Key Location/Qualifiers FH FT source 1..7106 FT /organism="Cupixi virus" FT /segment="L" FT /strain="BeAn 119303" FT /mol_type="genomic RNA" FT /country="Brazil" FT /db_xref="taxon:208899" FT CDS 31..6657 FT /codon_start=1 FT /product="L protein" FT /note="polymerase" FT /db_xref="GOA:Q6XQH2" FT /db_xref="InterPro:IPR010453" FT /db_xref="UniProtKB/Swiss-Prot:Q6XQH2" FT /protein_id="AAP44555.2" FT /translation="MDEKISSLKDFVRKQIPDRPEFFYQKEALLSQVEVSLILTEGFKL FT MSCLVEVESCEKNSCVHNSEQKFVDTILAENGIVGPTLPKVMPDGYRYFNKTLLLLEVF FT VRVRPDEFEKKWKSDMGKLLSLKDDLLRCGISLVPIVDGRCSYNTSIIPEWATERFRWL FT LIELLKESKEAMDFEIEDQEYQRLIHSLSRTCNQSLGFENIEQLKKVHLNYEDRLNEVI FT LAGLNSDLKESVIREELIKLKAWYKKEVFEKGHGNFVRTNQTSLLKTLQEIGSHAGTTV FT PECPMCCSKVFDLCYQMMLKIEGKESLNSSVSSDNNNPQISLVGREYLYVLSVCNKIKG FT KKIFNTRRNTLLFLDLIILNFVTEVFKKVPLGIQSLKVEGLIIGQMLLLTNDRALDILS FT ARRLLIKKIECNESWVKKCGDTLRRVEPSFWTSVCNYVKLPDFESLLLLAEVLCSDAPL FT LRYEPVQVEESHCTHKDFQLLNINQQDCLFECLSHISLSLINSMKTSFSSRLLINEKDY FT KRYFGTVRLKECYVQRFLFTEGKCGFLFYQKTGERSRCFSIYLSENGQLTELGSFYADP FT KRYFLPIFSGCVLRSMCSEMITWLDFDEELMHVVKPQLRSLVLSILCSPTKRAQNFLQG FT LRYFIMAFVNQAHHKQLMSKLIVECKSASDVLIQRLATKVFYTILTFGEDPGIHMTRKF FT KFLLNVSYLCHLITKETPDRLTDQIKCFEKFLEPKLEFGSVVVNPSLNGILDPKQEDNM FT LNGLEKLFSKSLYDVEDLKRPGISKDVLNYCLSLFTRGKLKVTGVLKTDPFKPSFTSTA FT LDLSSNKSVVVPKLDELGNIVSVYDKQKLISSCVASMAERFRTKGRFNLDPDTIDFLIM FT KNLTNLLSISGESPKASEELSLLYENLPEEITQVYDEIKNDIQVTLGKIGAKGSYKQKN FT GKEGKAGSPSNAETLESIWAPFGVLREIKIETSTHEIKDFDPGLLSMDIYEKLCTTVFE FT SSLKSSFFIDEVLSICPLELLLKNLTTKSFKENDFFECFKYILIQAGYDQRLGTYEHRS FT RARFGFREEVVRLRDDVRVSDRESNSEAIAKRLDRSFFTSAALRNLCFYSEESPTEYTC FT VSSNTGNMKFGLSYKEQVGSNRELYVGDLNTKMMTRLVEDFAEAVCNSMHYTCLNSESE FT FDRAICDMKMAVNNGDLCLSMDHSKWGPFMSPALFHRFLSGAKLKTMRLGDSVDTKPVL FT NVLKWHIHKVVEVPYNVAEAYCTGMLKRRLGLMSLQTQSISEAFFHQEIQTKKEVPSHI FT MSVLDMGQGILHNLSDLYGLISEQFLNYCLDFLYDAIPTSYTSSDDQITMIRMPQQSME FT TAEEGNADWLELLCFHDFLSSKLNKFVSPKTVCGTFAAEFKSRFFVMGEETPLLTKFVS FT AALHNVKCKTPSQLAETIDTICDQCVANGVGVSIVSEISKRVNRLIKYSGYPLNPFLAV FT ENQDVKDWVDGSRGYRLQRNIESCSIQESVLKQVRKFAKDVFLKIKRGQVFEEHLIQLI FT GADGDSAMEGFLSYVDCDKDKLREILEHRWLNLSANGDLRLVLRTKLMSSKRVLEKEQI FT PTLVKTLQSKLSKSFTKGAKKILAESINKSAFQASVASGFIGFCESVGSKCVRDGSGGF FT LYIREVVSKIISCQCTLCSANPGIIFCKNALSNVSNFSRPILWDYFSLVLTNACELGEW FT VFSPTKRPQQPNLLQNPNLFWAVKPKSVRLIEDQLGLGHVLQSIRRSYPKIFEEHLIPF FT MSDLQVNRTIDFTRLKYLDVCVAIDMMNENLGIVSHLLKRKDNSVYIVKQNECSVAHVR FT EVQYVDHDIGLSPQQVCTNFKLQLVLSSMISPLVISTSVLKSFFWYNEVLKLEDNSLID FT IGELTDFVILNKSYGVERVMYLEDMAMGYVVSSVDEPEIHLINAWVLTEHDVKKLESGS FT KVGDKDGKALAITLNIQFRHRRHSTKYHFTKGVVYSFTVEFQVPPSLQGPNLNTVPVRE FT MVLNASGMLGDHQSLDGVPLVASHPLMTGKKPIDLLTLLSESDIQISDDTGQLMAVYLD FT FSEFQSLIEDKYSFKIVGPERLDTPIILKGGVYMSEGKRLSTLMVELSGNVIVKALGAI FT ETDKEVGSLLLGLWPYIKTTGQKIKMDQNDFLLLYESHRELLLKSLEGLGGWLDFLDFS FT VCFSKSLSDLVISDNTGSLRLKGVTCRPIHNPRIVEDID" FT CDS complement(6748..7038) FT /codon_start=1 FT /product="Z protein" FT /db_xref="GOA:B0BLK9" FT /db_xref="InterPro:IPR017907" FT /db_xref="UniProtKB/Swiss-Prot:B0BLK9" FT /protein_id="ABY59842.1" FT /translation="MGNCRSKQESHPICPNTQTPEPTEAEFRRAAVNSLYGRYNCKCCW FT FADRNLINCSDHYLCLRCLNVMLRTSNLCNICWKPLPTRISVPTEPTAPSE" XX SQ Sequence 7106 BP; 2158 A; 1268 C; 1652 G; 2028 T; 0 other; cgcaccgggg atcctaggcg acacgtgata atggatgaaa agatctcctc tttgaaagat 60 tttgttagaa aacagatacc tgatagacca gagttcttct atcagaaaga agcactttta 120 tctcaagtgg aggtcagcct catactcact gagggtttca aactgatgtc atgcctggtt 180 gaggtggaat cttgtgagaa aaattcctgt gtgcacaaca gcgaacagaa gtttgttgac 240 accattttgg cagagaatgg tatagtaggt ccaacactgc caaaagtaat gccagatggt 300 tacaggtatt ttaacaaaac tttgcttttg ttggaggtct ttgttagagt gaggcctgac 360 gaattcgaga agaagtggaa gtctgatatg ggaaagctgc taagcttaaa ggatgatctg 420 cttaggtgtg gaatttcact tgtgccaatt gttgacggca ggtgcagcta caacactagt 480 ataattccgg agtgggcaac agagcggttc aggtggttac ttattgagct tctgaaagag 540 tccaaagaag ccatggattt tgaaattgaa gaccaagaat atcagagact aatccacagt 600 ctgtccagaa catgcaatca aagtctggga tttgaaaata tcgaacagtt aaaaaaggtt 660 catctcaatt atgaagatag actcaatgaa gtcatacttg caggtctcaa ctcagatctt 720 aaagaatctg tgataagaga agaactaatt aaactgaaag cctggtataa aaaagaggtg 780 tttgaaaagg gacatgggaa ctttgtgaga actaatcaga cttctttatt aaagactcta 840 caggagatag gatcacatgc tggcacaact gtgcctgaat gccctatgtg ttgtagtaaa 900 gtttttgatt tatgctatca aatgatgctg aagattgaag gaaaggagtc tctaaatagt 960 agtgtgtctt cagacaacaa caatcctcag atttctttgg ttgggaggga atatttatat 1020 gttctctcag tctgcaacaa gatcaaaggg aagaaaattt tcaacacgag aagaaatact 1080 ttactattct tagacttaat tatacttaat tttgtcaccg aagttttcaa aaaagtgccg 1140 ttggggatac aatctttgaa ggttgaagga ttgataattg gccaaatgtt gttgttaacc 1200 aatgataggg cacttgacat cctctcagct agaagattgc tcataaagaa aattgaatgt 1260 aatgaaagtt gggttaaaaa atgcggagac actctgagaa gagtggagcc ctctttttgg 1320 accagtgtgt gcaattatgt aaaattgcca gattttgaat ccctacttct attggcggag 1380 gttctatgct cagatgcacc tttactgagg tatgagcctg tgcaagtgga agaaagccat 1440 tgcacacaca aggactttca gttgctaaac attaatcaac aggactgtct ttttgaatgc 1500 ctatcacata tatctctctc attaatcaac tcaatgaaga cttccttctc atcaagactt 1560 ctaattaacg aaaaagatta caaaagatat tttggaaccg taaggctaaa agaatgttat 1620 gtgcaaagat tcctattcac agaggggaag tgtggtttcc tgttctatca gaaaaccgga 1680 gaaaggtcaa ggtgcttttc aatttattta tctgaaaacg gacagctcac agagttaggc 1740 tcattctatg ctgaccccaa gaggtatttt ctaccaatat tttctgggtg tgtgttacga 1800 tctatgtgtt cagagatgat cacatggtta gattttgatg aggaactaat gcatgttgtc 1860 aaacctcagc taaggtcctt ggtactaagt attctctgtt cacccacaaa aagggctcag 1920 aattttttgc agggtcttag atattttatc atggcatttg tgaaccaagc tcatcataag 1980 caattgatgt ctaaattaat tgtagaatgt aaatcagctt ctgatgtctt gatccagagg 2040 ttagctacca aagtctttta tacaatattg accttcgggg aggatcctgg gatccacatg 2100 acaaggaagt tcaaatttct tttgaatgtc agttatttat gccatttgat tacaaaagaa 2160 acccctgaca gactcactga tcaaataaaa tgttttgaga agtttttgga accgaagtta 2220 gagtttggca gtgttgttgt caacccgtca ctcaatggaa tcctggatcc aaaacaagaa 2280 gataacatgc tcaatgggtt ggaaaaactt ttctccaaaa gtctctatga tgttgaagac 2340 ctgaagaggc caggtatatc caaagatgtc ctaaattatt gtttatcgct tttcacccga 2400 ggcaaactga aagtgacagg tgtcttaaag acagatccat tcaagcccag tttcacaagt 2460 acagcgttgg acttatcaag caacaaaagt gttgttgtcc caaaattaga cgaattgggc 2520 aacattgtgt ctgtttatga caagcaaaaa ctcatttcct cctgtgtagc ctccatggca 2580 gaaaggttca gaactaaagg aaggttcaat ttggaccctg acacaattga cttcctaatt 2640 atgaagaact taaccaactt gctctcaatt agtggtgaga gtccaaaggc atcagaagaa 2700 ctttcattgc tttatgagaa cctacctgaa gaaatcaccc aagtctatga tgaaatcaag 2760 aatgacattc aggtaacctt ggggaaaatc ggagctaagg ggagctacaa acaaaagaat 2820 gggaaagagg gaaaagctgg atcccccagc aatgctgaga ctcttgagtc aatttgggca 2880 ccttttggag tgcttagaga gatcaagatt gaaacatcaa cccatgaaat caaggacttt 2940 gatcctggtc tgctgtccat ggatatttat gaaaagctgt gtacaacagt ttttgagtct 3000 tccttaaaat ccagtttttt tatagatgag gtcttaagta tatgcccact cgaattatta 3060 ttaaagaacc tgactacaaa gtcattcaag gaaaacgact tttttgagtg cttcaaatac 3120 attttaatac aagcaggtta tgaccagagg ctgggtacct atgagcacag aagtagggcc 3180 agatttggat ttagagaaga ggtggtaagg ttgagagatg atgttagggt gagtgataga 3240 gaaagcaatt ctgaagccat tgccaagcga cttgatagaa gtttttttac aagtgctgct 3300 ttgagaaatc tttgctttta ttcagaagaa tcacctactg agtatacatg tgtgagttct 3360 aatacaggca acatgaaatt tgggctcagt tataaagagc aggtagggtc taacagagaa 3420 ctgtatgttg gtgatttgaa tacaaaaatg atgactaggc tagttgagga ttttgctgag 3480 gctgtgtgca attctatgca ttacacgtgt ctcaattcag agtcagaatt tgatagggca 3540 atatgtgaca tgaagatggc agtgaacaat ggtgacctat gcctctcaat ggatcattca 3600 aaatgggggc ctttcatgag ccccgcactt ttccacagat ttttaagtgg ggccaaactg 3660 aaaaccatga gacttgggga cagtgtggat actaagcctg tattgaatgt tttgaaatgg 3720 cacatccata aggttgttga agtgccttac aatgtagctg aagcttactg cactgggatg 3780 ttgaaaagaa gattgggttt aatgagtctc caaactcaaa gtattagtga ggcattcttt 3840 catcaagaaa tccagacaaa aaaagaagtt cccagtcaca taatgtcagt actagatatg 3900 ggacaaggga tactccataa tttatctgac ttatatggct tgattagtga acagttcttg 3960 aattactgtt tagacttcct ctatgatgct atcccaacat cctacacctc aagtgatgat 4020 caaataacaa tgataaggat gcctcagcaa tctatggaga ctgcagaaga aggaaacgca 4080 gattggctgg agttgttatg tttccatgat ttcctatcat ctaaactcaa taagtttgta 4140 agccccaaga ctgtgtgtgg aacttttgct gctgagttta aatccaggtt ctttgtaatg 4200 ggtgaagaaa caccactttt gacaaagttt gtgtctgcag cacttcataa tgtgaagtgt 4260 aaaacccctt cccagctagc tgaaaccatt gacacaattt gtgatcaatg tgttgcaaat 4320 ggggttgggg tgagtattgt gtctgagatc tcaaaaagag tcaaccgtct gattaagtat 4380 tccgggtacc ccttgaaccc ctttctcgct gtggaaaacc aggatgtgaa ggattgggtg 4440 gatggatcta gagggtaccg tttgcaaagg aacattgaga gctgttccat tcaggaatca 4500 gtactcaaac aggtgagaaa attcgcaaag gatgtgttcc tgaaaataaa aagaggacag 4560 gtttttgagg aacacctaat acagttaatt ggtgctgatg gtgacagtgc catggagggt 4620 ttcttatctt atgttgactg tgacaaggac aaacttagag agatactcga gcaccgttgg 4680 ttgaatctct cagccaatgg agatttgaga ctcgttttga gaacaaagtt gatgtctagc 4740 aaaagagtat tagaaaaaga acaaatccca acattggtga aaacacttca atcaaagctt 4800 tccaaaagct ttacgaaggg tgctaaaaag atattggctg aatcaataaa caaatcagcc 4860 ttccaggcat cagtcgcttc aggattcatt gggttctgtg agagtgtcgg aagcaagtgt 4920 gttagagatg gcagtggagg attcttatac attagagagg tggtgagtaa aataattagc 4980 tgccagtgca ccttatgttc agcaaaccca ggaatcatct tttgcaaaaa tgcattgtct 5040 aatgtgtcca atttttcaag accaatcttg tgggattact tctctcttgt tttaacaaat 5100 gcttgtgaac taggggagtg ggtgttttct cctaccaaaa ggcctcaaca gccaaattta 5160 ctacaaaacc ctaacctctt ttgggctgtg aaacccaaga gtgtccgcct tatagaagat 5220 cagttaggct taggacatgt attgcagtcg ataaggagaa gttatcccaa aatttttgaa 5280 gaacacctga ttccgtttat gagtgaccta caggtgaata ggacaattga ttttactaga 5340 ttgaagtatc tggatgtatg tgtggctatc gacatgatga atgaaaattt ggggattgtg 5400 tcacacctgc tgaaaagaaa agataattca gtttatattg tcaaacagaa tgagtgttcc 5460 gttgcacatg tgagagaggt gcaatatgtt gaccatgaca ttggcctaag ccctcaacag 5520 gtttgcacta attttaagct ccagttagtg ttatcctcta tgataagtcc ccttgtaata 5580 agcacctcag ttctaaaaag cttcttttgg tataatgaag ttctaaagtt agaggataac 5640 agtttgattg acattggtga actcacagac tttgttatct tgaacaaaag ctatggtgtg 5700 gagagggtca tgtatctgga agacatggca atgggatatg ttgtctctag tgttgatgag 5760 cctgagattc acttgattaa tgcttgggtc ctcactgaac atgatgtcaa aaagctagaa 5820 tcaggctcca aggtagggga caaagatggc aaggcactgg ccatcactct caacattcag 5880 tttagacata ggaggcactc aacaaagtat cattttacca aaggtgttgt atattcattc 5940 acagtggagt tccaggttcc tccctcactt cagggtccaa atctgaacac tgtgcctgtg 6000 agggagatgg tgttgaacgc atcagggatg ttgggggacc accagtctct ggatggggtt 6060 cctctggttg cgtctcaccc tcttatgacc gggaaaaaac ctattgattt gctaacctta 6120 ttgtcagaga gtgatattca aatctctgac gacacaggtc aactgatggc tgtgtacttg 6180 gatttcagtg aatttcaatc actgattgag gacaagtatt cttttaaaat tgtggggcct 6240 gagagattgg acactccaat tatactaaag ggaggggttt atatgtctga aggtaagagg 6300 ctatcaacct taatggttga actttcaggt aatgtgattg tcaaagcatt gggtgctata 6360 gaaacagaca aagaggttgg gagtctgctg ctcggcctat ggccctacat caaaaccact 6420 ggtcagaaga tcaaaatgga tcaaaatgac tttctgcttt tgtatgagtc acatagggaa 6480 cttcttctta aatcacttga gggattgggt gggtggctag atttcttgga tttcagtgtg 6540 tgtttcagca agagtctctc agatctggtt atatctgaca acactggcag tctgagactg 6600 aagggtgtca cttgcagacc catccacaac ccgaggattg tggaggacat cgactaacat 6660 gacagccgcc accgacggag gcccggggga cccacgggga cccccccgga ccgggggggc 6720 cccgggccgc tggcgctgtg gcggaactta ttcggaggga gcggttggct ccgttggcac 6780 cgagatgcga gttggtaggg gcttccagca gatgttgcag agattggaag tccttagcat 6840 cacatttaag cacctcaagc agagataatg gtcagagcaa ttgataagat ttctatctgc 6900 aaaccaacag catttacagt tgtatctacc gtagagactg ttcaccgcag ctcttctaaa 6960 ttcagcttca gttggctcag gagtctgggt gttagggcag attggatgtg attcttgctt 7020 tgacctacag ttgcccatgt tggcggtcta tgataaaaga ggtggaatag tatgtagtgc 7080 tagttacgcc taggatcccc ggtgcg 7106 // |
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