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EBI DbfetchID AY216514; SV 2; linear; genomic RNA; STD; VRL; 7184 BP. XX AC AY216514; XX DT 05-JAN-2004 (Rel. 78, Created) DT 10-JAN-2008 (Rel. 94, Last updated, Version 2) XX DE Oliveros virus strain 3229 segment L, complete sequence. XX KW . XX OS Oliveros virus OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus; OC New world arenaviruses. XX RN [1] RP 1-7184 RX DOI; 10.1016/j.virol.2003.08.016 RX PUBMED; 14698659. RA Charrel R.N., Lemasson J.J., Garbutt M., Khelifa R., De Micco P., RA Feldmann H., de Lamballerie X.; RT "New insights into the evolutionary relationships between arenaviruses RT provided by comparative analysis of small and large segment sequences"; RL Virology 317(2):191-196(2003). XX RN [2] RP 1-7184 RA Emonet S., de Lamballerie X., de Micco P., Charrel R.N.; RT "Complete sequence determination and analysis of the large RNA segment of RT arenaviruses"; RL Unpublished. XX RN [3] RP 1-7184 RA Charrel R.N., Lemasson J.-J., Garbutt M., Khelifa R., De Micco P., RA Feldmann H., de Lamballerie X.; RT ; RL Submitted (09-JAN-2003) to the EMBL/GenBank/DDBJ databases. RL Unite des Virus Emergents (EA3292, IFR48, IRD UR034), Universite de la RL Mediterranee, Faculte de Medecine, 27 Blvd Jean Moulin, Marseille 13005, RL France XX RN [4] RC Sequence update by submitter RP 1-7184 RA Emonet S., de Lamballerie X., de Micco P., Charrel R.N.; RT ; RL Submitted (10-MAY-2004) to the EMBL/GenBank/DDBJ databases. RL Unite des Virus Emergents (EA3292, IFR48, IRD UR034), Universite de la RL Mediterranee, Faculte de Medecine, 27 Blvd Jean Moulin, Marseille 13005, RL France XX CC On Jan 9, 2008 this sequence version replaced gi:37787721. XX FH Key Location/Qualifiers FH FT source 1..7184 FT /organism="Oliveros virus" FT /segment="L" FT /strain="3229" FT /mol_type="genomic RNA" FT /country="Argentina" FT /db_xref="taxon:42764" FT CDS 31..6735 FT /codon_start=1 FT /product="L protein" FT /note="polymerase" FT /db_xref="GOA:Q6XQH7" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="InterPro:IPR014386" FT /db_xref="UniProtKB/Swiss-Prot:Q6XQH7" FT /protein_id="AAP44550.2" FT /translation="MDESVSSLFDLLRKHFPAKEEISRQITVVTSQTEMRMILTEGFKL FT LSLLIELDSCEVNNCSHNKEDLTVEAILSKDNILTIALPRIVPDGYSLYGNVLILLETF FT VRVNPSSFEQKYNQDMNKLLSLKNDLQLCGITLVPLVDGRTNYYNKFVDDWVIERFRWL FT LTQIMKVAKESGESIEELEYQRLVTSLSKLENQSLGFENIIKMPQTGIDYRDKLKARMF FT ANLSNKMKESEINQSLLSLKLAFDEAYNDESHLKKFQKTNKEDLIFKLGQQINLSDEKL FT SCMSCSSKLFSIVSSITQNRDKLDSHVMSVSNAKLWHHESGIANVNEYLRILSVCNKIK FT SAKILNTRRNTLLFLDMIVLNFIDDCWKNDPTILFQFKKSGLLVGQLAYFVNDRFFDLL FT LLKELLSKKLKSSPDWIHRCLCNIRKQEFFDISGVEFWIRQPDYESVEELCCALEPVKP FT KLQYCRDEDNHENHKLDLADKDNYFTCLSVLSSVCLGLVNSMKTSFTSKMVINEKSPNN FT FYGEVELKECYCQRFYVSDEITGLLFYQKTGEKSRCYSIGVTMHGSYKYIGSFYCDPKR FT FFLPIFSQVVLFQMTEEMMSWLPEEPSYKEPVVANLRKLILMLLCNPSKRNQNFLQGMR FT YFIMAYVNQFHSVELMSKLEVPCKSVSEECVQKLTYNLLVDVLTKGDVNEHMTRKFKFC FT LNVSYLCHLITKETPDRLTDQIKCFEKFLEPKLKFKSVIINPNLTGDLTEEQEEQLLNS FT IEKLLGKGLQDINDSSEPGISRELLSMCISAFNRDLLRVNGKLKNDPYKPNFTSTALDL FT SSNKSVVIPKLDELGNPISKYDYELLVSSCIASMAESFKTKGKYKLDPTSQEFLILKNL FT YSLMSKSKRDDHMKDSEDSKQNLSSDLENLSEEQVLILEQVKRDVNLALSKMRETKLKE FT KTEARQSSSGSSLKNQQKRQAELQERLSELWSEFMCMKIITVEVSLHEIKDFDPDLIDH FT TTLKSMLDKLYNSDLASEFFLEEILNPCPLEFLVKNMTTSSYLEGDLFECFKYTLISAG FT FDQKLGTYEHKNKTRLGFKYEALKVREEGRMSLRESNSEAIARRLDRSVFSNSALRNLC FT FYSDESPISYSHVSSDTGKLKFGLSYKEQVGSNRELYVGDLNTKLMTRLIEDFSESVVS FT NMNYSCLNSEKEFERSVMEMKMSVNLGEMNFSLDHSKWGPYMSPVIFAAFLQGLKLEQG FT SMCTPVSVEPIITLLSWHIHKVVEVPYNVIHAYMTGMIKRQLGLMSPGESSKTEAFIHR FT LLVDEREPLSHVMSVLDMGQGILHNTSDLYGLVTEQFINYAMRILYDVSMTSFTSSDDQ FT ITMVKLNEDLKDMDNPEVISNWERMINFHTFISSKFNKFVSPKTVIGTFAAEFKSRFFV FT WGEEVPLLTKFVSAALHNIKCKTPIQLSETIDTISDQCVANGVSVEIVSCISNRTNKLV FT RYSGFPDNPFLSVENMDVKDWVDGNRGYRLQRNIESHLEVDGCTRFVRQAARKVFRNIK FT SGKIMEQTLVNLVQEDGDKAFQGFMKSVDVSDDDIKLLQNFRWINLSTHGDMRLVLRTK FT LMSSRRIIEQEEIPGLIKSIQSKLSKNFVRGAKRILADSINKSAFQSSIASGFIGFCKS FT MGSKCVRLGGGGFGYIKDIKNKVKHDCLCDICFRWRGCVYCPSSCADVFEFSRPLMWDY FT FTLVLTNACELGEWVFEDVEIPKDLYFLRNPNLFWLVKPRVTCQLEERLGLSHILQSIR FT KNYPTLFETHLSPFMSDFMVGKTLGSLTVKFLDLCVALDLANENLGITKHFLKERRHEI FT YVVKQDESSQSHIRNVKGIESSVELNSMQVCNNFLTQLLMSSFIQPLVLTSSVFKKFNW FT FAEVLCLKTEEEVCLKQLTDFVLQVKKFNVDRAMHIEDLSAGYISSTINVTSFSLSVPT FT FLECVDSDFINKEGNEPGDFKDLLSSEFTKDTLTLDFCIQVSHIKRSVKFNVKRTLVYT FT LAVRTQIEKKIILEAIGTDDQISLIVSELDLFCSGHTGNHFVLDAAPLIYSEPLIAGSL FT KFDLLSMLRDQELSLTSSEKMPTFNFDFSSQKHHIVNKFAYKLVGPSVYDEPLVLNKGI FT VYSGERKLTSLGVDVSGERIVQAMGELDSISEQELFLTNLWGYSKETDIKVRIIQDNLK FT ILTDNYFVQLKNSLKTFAEWLNLGNYMLCYSKTLDTIMISDVSGRIKLKGVICRKLIED FT EVMEVE" FT CDS complement(6817..7116) FT /codon_start=1 FT /product="Z protein" FT /db_xref="GOA:B0BLK7" FT /db_xref="InterPro:IPR003224" FT /db_xref="InterPro:IPR018957" FT /db_xref="UniProtKB/Swiss-Prot:B0BLK7" FT /protein_id="ABY59840.1" FT /translation="MGSKSSKSSGFENVPSLGLSHTNQPRVSLIREARPSLYGRYNCKC FT CWFQNKNLVECSDHYLCLKCISSMLRRGQNCEICGKPIPTHIAVTTAPTAPPEP" XX SQ Sequence 7184 BP; 2320 A; 1207 C; 1506 G; 2151 T; 0 other; cgcaccgggg atcctaggca ttccttgatc atggatgaaa gtgtgtcttc gctttttgat 60 ctcctcagga aacactttcc tgctaaagag gagatcagtc gtcagatcac tgttgtcacc 120 tcacaaactg aaatgagaat gattctcaca gaaggcttca agctactctc actattgatt 180 gagttggact catgtgaggt aaacaattgt tctcacaaca aagaggatct cacagttgag 240 gcaatcctca gtaaagacaa cattcttaca atagctttac caagaattgt acctgatggc 300 tacagtcttt atggaaatgt gctaatactg ctagaaacct ttgtcagagt gaacccgtca 360 tcatttgaac aaaagtacaa tcaagacatg aacaaactct tgtccttaaa aaatgatctt 420 caattgtgtg gcataaccct tgtccctttg gttgatggaa gaacaaatta ttacaacaag 480 tttgttgatg attgggtgat cgaaaggttc agatggctgt tgactcaaat tatgaaggtt 540 gctaaggaaa gtggtgagag cattgaggaa cttgaatatc aaaggcttgt gacaagtctg 600 tctaaactag aaaatcaaag cttgggattt gagaatatta ttaaaatgcc acaaactggt 660 attgattata gagacaaatt gaaagctaga atgtttgcca atctatcaaa taagatgaag 720 gaatcagaaa ttaatcaaag tttattaagc cttaaactag cttttgatga ggcatacaat 780 gatgaaagcc acctaaaaaa gtttcagaag actaacaaag aagacttaat ctttaaactg 840 ggccaacaaa tcaatctaag tgatgagaag ttgtcatgta tgtcctgcag ttcaaagtta 900 ttttccatag tgagctctat cactcagaat agagacaaac ttgattctca tgtgatgtca 960 gtaagtaatg ccaagttatg gcatcatgaa tcaggcattg ccaatgtgaa tgagtacctt 1020 cggattttaa gtgtgtgtaa taaaatcaaa agtgccaaaa ttttgaatac tagaagaaac 1080 accctcttat tcttggacat gattgttttg aatttcattg atgactgttg gaaaaacgac 1140 ccaacgatac tttttcaatt taagaaatct gggcttctgg tggggcagct agcatacttt 1200 gtaaatgata gatttttcga tctactctta ttaaaagaac tattatctaa aaagctgaag 1260 agttctcctg attggataca cagatgttta tgcaatataa gaaagcaaga attctttgac 1320 atctctggtg tagagttttg gatcagacaa cctgattatg aaagtgttga ggagctttgt 1380 tgtgcacttg agcctgtaaa acccaaactt caatactgta gagatgagga caaccatgag 1440 aatcataagt tggatttggc agataaggat aattatttta cctgcctaag tgttctttca 1500 tctgtgtgtc ttggacttgt aaattctatg aaaacctcct ttacttctaa aatggtaatt 1560 aatgaaaagt ccccaaataa cttttatggt gaggttgaat tgaaagaatg ttattgtcaa 1620 agattttatg tctctgatga aataaccgga ttgctttttt atcagaagac aggggagaag 1680 tcaaggtgtt attcaattgg tgtaaccatg catggctcat acaaatacat tggctctttt 1740 tactgtgatc caaaaaggtt ctttttgccc atattttcac aagtagtctt atttcaaatg 1800 actgaagaaa tgatgagttg gttgccagaa gaaccttctt ataaagaacc agtggttgca 1860 aacttgagga aactcatttt gatgctactg tgcaatccgt caaaaaggaa ccaaaatttc 1920 ctacaaggta tgagatactt cataatggct tatgtaaatc aattccacag tgtggaattg 1980 atgagcaaac tagaggtgcc atgtaaaagt gtttccgagg agtgtgtcca gaagctgaca 2040 tataatcttc tagttgatgt tttgaccaaa ggggatgtca atgaacatat gactagaaaa 2100 tttaaatttt gtttgaatgt tagttatcta tgccacctaa taacaaaaga aacacctgac 2160 agactaactg atcagattaa gtgctttgag aagttcctag aaccaaaact gaagttcaaa 2220 tcagtaatca tcaatcccaa ccttactggt gacctcactg aggaacaaga agaacaactc 2280 ttgaatagca tagagaagtt gctgggcaaa ggtttgcagg acatcaatga ctcatcagag 2340 ccaggtattt ctcgtgaact cttaagcatg tgcatctcag ctttcaacag agatttgttg 2400 agagtcaatg gcaagttgaa aaatgatcca tataaaccca atttcactag tactgcactt 2460 gatttgtcta gcaacaagag tgttgtgatt ccaaaacttg atgaactggg caatccaatt 2520 tcaaagtatg attatgaatt gcttgtatcc tcatgcattg catcgatggc agagtcattc 2580 aaaacaaaag gtaaatacaa gttggatcca acatctcaag agtttcttat ccttaagaat 2640 ttgtatagct tgatgagcaa atccaagagg gatgatcata tgaaagactc agaggactca 2700 aagcaaaact tatcttcaga tttggagaat ttatcagaag agcaagtttt aattctagaa 2760 caagtcaaaa gagatgtgaa tttggctttg tcaaaaatga gggaaacaaa attaaaagag 2820 aagacagaag ccaggcaatc atcatcaggc tcctctctta aaaatcaaca aaagagacaa 2880 gctgaactgc aagaaaggct ttcagagctc tggagtgaat ttatgtgcat gaaaattatt 2940 actgttgagg tctctttgca tgaaattaaa gattttgatc ctgatctgat cgaccacaca 3000 accttgaaat ctatgttgga caaattgtac aattcagatt tggcttcaga atttttctta 3060 gaagagattc tcaatccttg tcctcttgag ttcctagtta agaatatgac aacatcatcc 3120 tatttggaag gtgatctatt tgaatgtttt aaatacacat tgatcagtgc agggtttgac 3180 cagaaactgg gtacctatga gcataaaaac aagacaagat tggggtttaa atatgaagct 3240 ttaaaagtaa gagaggaagg caggatgagt ctcagagaaa gcaactctga agcaattgct 3300 cgaaggttgg ataggtcagt gttttcaaat tctgccttaa ggaatctatg tttttattct 3360 gatgagtcac ccatttcata tagtcatgta tcatctgaca ctggtaaact aaaatttggt 3420 ttgagttata aagaacaggt gggatctaac cgtgagttat atgtcggtga tttaaatacg 3480 aaactcatga caaggctcat tgaggatttt tcagaatcag ttgtctcaaa catgaactat 3540 tcatgtttaa atagtgaaaa ggagtttgaa agatctgtga tggagatgaa aatgagtgtc 3600 aaccttgggg agatgaattt tagtttagat cactcaaaat ggggaccata tatgtctcca 3660 gtcatctttg cggcttttct tcaaggattg aagttagaac agggatcaat gtgcactcct 3720 gtttcagttg agcccataat aactctgctg tcatggcata tccataaagt tgtggaagtt 3780 ccttataatg ttatacatgc atacatgact ggcatgatta aaagacagct tggattgatg 3840 agccctggag aatcatctaa gacagaggca tttatccacc ggttgttggt ggatgaaaga 3900 gaacctctga gccatgtgat gtctgttttg gatatgggtc aaggcattct tcacaacact 3960 tcagacttgt acggtttagt aacagaacag ttcatcaatt atgctatgag aattctttat 4020 gatgttagta tgacttcatt cacatcaagt gatgatcaaa taacaatggt caaattaaat 4080 gaagatttga aagatatgga caatcctgag gtgatatcca attgggaaag gatgatcaat 4140 tttcacacat tcatatcatc aaaattcaat aaatttgtaa gccctaaaac agtaattggc 4200 acttttgctg cagaattcaa atcaagattt tttgtttggg gagaagaggt tcccttatta 4260 acaaagtttg tttctgctgc attacataac ataaaatgca aaacaccaat acagttgtcc 4320 gaaaccattg acacaatctc tgatcaatgt gtggctaatg gagtttcagt ggagattgtg 4380 tcttgcatct caaacagaac taataaactg gtaagatata gtggttttcc tgataatccc 4440 tttttaagtg ttgagaatat ggatgttaaa gattgggtag atggaaacag aggatatcga 4500 ctccaaagga acattgaatc acatttggag gtggatgggt gtactagatt cgttcgccag 4560 gctgccagaa aagtttttag aaacattaag tcaggtaaaa ttatggaaca gactcttgtt 4620 aacttagtgc aggaagatgg agacaaggca tttcaaggtt tcatgaaaag tgtggatgtt 4680 tctgatgatg acatcaagct attacaaaac tttaggtgga ttaatttgtc tacacatggt 4740 gatatgagat tggtgctgag aaccaaattg atgagttcta gaagaattat agagcaggaa 4800 gaaatcccag gccttataaa gtctatacag tctaaattat ccaagaattt tgttagagga 4860 gcaaaacgta tattagcaga ttccatcaat aaatcagcat tccagtcatc aattgcttca 4920 gggttcatag gattttgtaa gagcatgggc agtaagtgtg ttagacttgg tggaggagga 4980 tttggatata ttaaagacat taaaaataaa gtaaaacatg attgtctttg tgacatatgt 5040 ttcagatgga gaggctgtgt ttactgtccc agctcgtgtg ctgatgtctt tgaattcagc 5100 agacccttaa tgtgggatta ctttacactt gtgttgacta atgcatgtga actgggagag 5160 tgggtttttg aagatgtgga aatcccaaaa gatctgtatt ttttgagaaa tccaaatctc 5220 ttctggctgg tgaaaccaag agtaacctgt caactggaag aaagattggg tctctcccat 5280 atcttgcagt caattagaaa aaactatcca acactcttcg aaacgcatct ctctcctttc 5340 atgagtgact ttatggttgg taaaacctta gggtctctga ctgttaagtt cttggattta 5400 tgtgtagcgt tagacctggc taatgagaac cttggaataa caaaacattt tctgaaggaa 5460 agaaggcatg agatctatgt tgttaagcaa gatgagagct cacaatcaca catcagaaat 5520 gtcaaaggca ttgaaagttc agttgagtta aactcaatgc aagtgtgcaa taatttctta 5580 acacagctcc tgatgagctc tttcatacag ccacttgtct tgactagctc tgtgttcaaa 5640 aagtttaact ggtttgctga ggtcctctgt ctgaaaacag aagaagaagt ttgtctgaag 5700 caattgacag attttgtcct tcaggtcaag aaattcaatg tggacagggc aatgcatatt 5760 gaagacctaa gtgccggtta cattagttca accatcaatg tcacaagttt tagtttatca 5820 gtccccacct ttcttgagtg tgttgattct gatttcatca acaaagaagg aaatgaacct 5880 ggtgatttta aggatttatt gagttcagag ttcacaaagg acacattgac tcttgatttt 5940 tgtatccaag tatcacacat taaaaggtca gtcaaattca atgtgaaaag gacacttgtc 6000 tatactcttg ctgtgagaac tcaaattgag aaaaagatca tcttagaagc aattgggaca 6060 gatgatcaga ttagcttaat agtctcagag ttggatctgt tttgtagtgg acacactggc 6120 aatcattttg tgcttgatgc agctccttta atttacagtg agccactaat agcaggatct 6180 ctaaaatttg acctcctttc aatgttgaga gaccaggaat tatctctcac atcaagtgaa 6240 aaaatgccca catttaactt tgattttagt tctcaaaaac accacattgt gaataaattt 6300 gcatacaagc tcgtaggacc ctctgtctat gatgaaccct tggttttgaa taaaggcatt 6360 gtttattctg gggagagaaa gctcacttct ctaggagttg atgtcagcgg agaaagaata 6420 gtgcaagcaa tgggtgaatt ggacagcatc tcagaacaag agttgttcct gaccaactta 6480 tggggatact caaaagaaac tgatattaaa gtcaggataa ttcaagacaa tctaaagatt 6540 ttgactgaca actattttgt gcaacttaaa aattccttga agacctttgc tgagtggctt 6600 aatttaggca actacatgct atgttatagc aaaacattag acactattat gatttcagat 6660 gtcagtggca ggataaagtt aaaaggtgtt atatgcagga aattgattga ggatgaagtc 6720 atggaggtgg agtaaacacc accccgggct cagccccggg ggggcccccg gggcgaggga 6780 cccccttggg ggtccctcgc cgggggagcc cgtgtttcag ggctctggag gtgctgttgg 6840 agcagtggtc acagcgatgt gggttggtat cggtttccca cagatctcac aattctgacc 6900 ccttctgagc atagagctta tacactttag acaaagataa tggtcactac attccaccaa 6960 gttcttgttt tgaaaccaac agcacttaca attgtatctc ccataaagtg agggtcttgc 7020 ctcccttata agagataccc ttggttgatt ggtgtgagaa agccctagtg aaggaacatt 7080 ctcaaaacca gagcttttgg agctctttga tcccattttg tgactctttt cacaccttga 7140 aaacctagaa gcgtgaacag tttgtgccta ggatccccgg tgcg 7184 // |
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