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EBI DbfetchID AY216506; SV 2; linear; genomic RNA; STD; VRL; 7132 BP. XX AC AY216506; XX DT 05-JAN-2004 (Rel. 78, Created) DT 15-AUG-2008 (Rel. 96, Last updated, Version 3) XX DE Sabia virus strain SPH114202 segment L, complete sequence. XX KW . XX OS Sabia virus OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus; OC New world arenaviruses. XX RN [1] RP 1-7132 RX DOI; 10.1016/j.virol.2003.08.016 RX PUBMED; 14698659. RA Charrel R.N., Lemasson J.J., Garbutt M., Khelifa R., De Micco P., RA Feldmann H., de Lamballerie X.; RT "New insights into the evolutionary relationships between arenaviruses RT provided by comparative analysis of small and large segment sequences"; RL Virology 317(2):191-196(2003). XX RN [2] RP 1-7132 RX DOI; 10.1016/j.mib.2008.06.001 RX PUBMED; 18602020. RA Charrel R.N., de Lamballerie X., Emonet S.; RT "Phylogeny of the genus Arenavirus"; RL Curr. Opin. Microbiol. 11(4):362-368(2008). XX RN [3] RP 1-7132 RA Emonet S., de Lamballerie X., de Micco P., Charrel R.N.; RT "Complete sequence determination and analysis of the large RNA segment of RT arenaviruses"; RL Unpublished. XX RN [4] RP 1-7132 RA Charrel R.N., Lemasson J.-J., Garbutt M., Khelifa R., De Micco P., RA Feldmann H., de Lamballerie X.; RT ; RL Submitted (09-JAN-2003) to the EMBL/GenBank/DDBJ databases. RL Unite des Virus Emergents (EA3292, IFR48, IRD UR034), Universite de la RL Mediterranee, Faculte de Medecine, 27 Blvd Jean Moulin, Marseille 13005, RL France XX RN [5] RC Sequence update by submitter RP 1-7132 RA Emonet S., de Lamballerie X., de Micco P., Charrel R.N.; RT ; RL Submitted (10-MAY-2004) to the EMBL/GenBank/DDBJ databases. RL Unite des Virus Emergents (EA3292, IFR48, IRD UR034), Universite de la RL Mediterranee, Faculte de Medecine, 27 Blvd Jean Moulin, Marseille 13005, RL France XX CC On Jan 9, 2008 this sequence version replaced gi:37787705. XX FH Key Location/Qualifiers FH FT source 1..7132 FT /organism="Sabia virus" FT /segment="L" FT /strain="SPH114202" FT /mol_type="genomic RNA" FT /country="Brazil" FT /db_xref="taxon:45709" FT CDS 48..6686 FT /codon_start=1 FT /product="L protein" FT /note="polymerase" FT /db_xref="GOA:Q6UY61" FT /db_xref="InterPro:IPR010453" FT /db_xref="UniProtKB/Swiss-Prot:Q6UY61" FT /protein_id="AAP44542.2" FT /translation="MQDPLLGTLSELKDLVRKTIPDVIELAYQKDALLSQVHPRSVLIE FT GFKLLSLLVELESCKVNACHHNYEQKFIDVILSDGGILCPTLPKVVPDGYNLMGKTLIL FT LETFVRVNPDDFEKKWKADMSKLISLKTDLGKIGVTLVPVVDGRSNYNTSFVSDWTTER FT LRWLLIEVLKGMKTTSELEIEEQEYHRLIHSLAKTNNQSLGFENLECLKRNMLSYDQLL FT DSSLLVGVKNDVKESKVMEELIRLKIWYKSEVYEKGLGKFVKTDKKVLLSQLITLGSHE FT ENDSLDCAFCSSRILELCFKLSVKMHEDVLTRGLNLDGTKTLHSSVQSYLNVLSMCNKI FT KGSKIFNTRRNTLLFLDLIMLNFVVDEMVKDSTVIRNLKNAGLIVGQMILLVNDRVLDI FT LTANKLIRQKLTTNEKWLSICSSVLKRYDLELWEKLCYLIRVPDFNELFQLAKELVSDR FT PMMRYSVHKAEERQCCHKAMENFTDDDFKIMLKALSHLSLGLINSMKTSFSSRLLINER FT DYSRYFGNVRLRECYIQRFPITNNIIGLLFYQKTGERSRCYSLYIAENGELTEIGSFYC FT DPKRYFVPIFSEAVITSMCEEMINWLNFDSELVRIVSTQLKTLMLLLLCSPSKRNQTFL FT QGLRYFIMAYVNQAHHIDLMSKLAVECKSSSEIQLQRLCVRLFVSILSGDNEIEYGFTR FT RFKFLLNISYLCHFITKETPDRLTDQIKCFEKFLEPKLKFNSVIVNPSLNGTLTESQEH FT QMISSIDRFFSKELLDQSDVKEPGVSRELLGYCVSLFNRGKLRVSGDLKVDPFRPTFTS FT TALDISSNKSVVVPKLDELGNIVDKYNKQLMVSSCVTSLVEMFKTKGRYNLDPDSIDFL FT VLKNLTNLVSANVPQEKSQEELSTLYEALTEDQISAFEQVRDEVQLALHKMKSSDAREE FT RLQDPKRNEKNASKGKILESLWSPHQVNRAIKNEASIHEIKDFDPDILDSHLVEKLCHE FT VYNSSQKSLFFLDEPLKSVPLEMLLINLTTIAYEEEEFFECFKYLLIQGDFDQKLGTYE FT HKSRSRLGLSSEALKVQENARVSTRESNAEAIAKKLDRTFFTSAALRNLCFYSEDSPTE FT FTSVSTNTGNLKFGLSYKEQVGSNRELYVGDLNTKLMTRLVEDFSEVVTGSMRFSCLNS FT EKEFERAICDMKMAVNNGDFSLSMDHSKWGPHMSPALFFTFLANLNLTEPKSRTRLNLD FT PLLNILKWHLHKTVEVPFNVAQAYCIGKLKRSLGLMECQCSSLTEEFYHSYLQIQDEIP FT SHIMSVLDMGQGILHNLSDLYALITEQFLNYVIHKLFDIDVTSYTSSDDQISIMKLPLS FT TKENDEDFDWLEIICFHEYLSSKLNKFVSPKSVVGNFVAEFKSRFFVMGEETPLLTKFV FT AAALHNVKCKTPTQLAETIDTICDQCVANGVGVDIVSRISERVNRLISYSGYKETPFLT FT IVNQDVKDWTDGSRGYRLQRNIENSFGNQELLRLIRRGARKVFLEIKKGHVFEENLIGL FT IGRGGDEALRGFLLYAGFAENDIVEALRHKWLNPSTFGDLRLVLRTKIMSSKRILERES FT VPSLIKTLQSRMSKNFIKGAKKILAESINKSAFQSSVASGFIGFCKSMGSKCVRDGKGG FT FMYLKELYNNVNKCGCCICLEWPGVVYCQDSLAKISQFARSILWDYFTLVLTNACEIGE FT WVFSDVKSPSAPPILSNPNLFWAVKPKIQKHIEDRLSLNHILHSIKRNYPYLFEEHLAP FT FMSDLQFNQMMNPSHVKFLDVCIALDMMNENLGIIGHLLRGRNHFIYIVKQSECASAHI FT RQSDYVDHELGLSPQQVCYNFKVQFLFSSMIDPLIVSTSTLKTFFWFNEVLSIEEEDQI FT DLGELTDFTLFIKTGHLNRAMTADDITMGYVCSNLAEEIITLNSYGSFQEFRSNHPSKN FT DLSDILKTLTSESIKLTLDIQIVHMRNSTKYNISRKIVYTLKALCALPLEDCFTKDPVA FT LVESLELFASGVNGGHLQLDGVTMVSVLPLLRGKKAVNLAQILMDNDLAATNDHNVMES FT VTLDFTKFHDELGDKFCYSLVGPEDQGNPIVLHNGMFMIDNQKLSYLKVEIFGDTIIKA FT LGALDSPREIGSLLHGLWPYLKATKQIINFDQTDFEMIYDLHRVVLLESIAQFGDWVEF FT ASFKVAFSKHYKDIVVADNLGNLRLKGVTCRLFRQQQSVEDIE" FT CDS complement(6757..7059) FT /codon_start=1 FT /product="Z protein" FT /db_xref="GOA:Q6UY62" FT /db_xref="InterPro:IPR017907" FT /db_xref="UniProtKB/Swiss-Prot:Q6UY62" FT /protein_id="ABY59837.1" FT /translation="MGNSKSKSKLSANQYEQQTVNSTKQVAILKRQAEPSLYGRHNCRC FT CWFANTNLIKCSDHYICLKCLNIMLGKSSFCDICGEELPTSIVVPIEPSAPPPED" XX SQ Sequence 7132 BP; 2248 A; 1184 C; 1544 G; 2156 T; 0 other; cgcaccgggg atcctaggca gaaccgtaac ttaaacttct ggcagtcatg caagaccccc 60 tcttaggaac cctgtctgaa ttaaaggatt tggttagaaa aaccatacca gatgtaattg 120 agcttgcata tcaaaaggac gcattacttt cacaagtgca tccaagatca gtgttaattg 180 aggggtttaa acttttatct ttgttggtgg agttggagtc ctgtaaggta aatgcatgcc 240 atcataatta cgaacaaaaa tttatagatg tgattctttc cgatggtggc attctctgtc 300 caactctgcc taaggtggtg ccagatggtt acaacctgat gggaaagact ctcatcttgt 360 tggagacttt tgttagagta aatccagacg actttgaaaa gaaatggaag gctgatatga 420 gcaaattaat ctctctaaaa acagacctag gcaagatagg tgttacatta gtccccgttg 480 tagatggccg cagcaattac aataccagct tcgtgtctga ttggaccaca gaaaggttga 540 ggtggttgtt aatagaggtg ttgaaaggta tgaagactac ttcagaacta gaaattgaag 600 aacaagaata tcatagatta atccatagtt tggccaagac caacaatcaa agccttggtt 660 ttgaaaatct tgaatgtctc aagaggaata tgttatccta tgatcagttg ctggattcct 720 cattgttagt tggagttaag aatgatgtga aagaatcaaa agtgatggag gagcttataa 780 gattgaaaat ttggtacaaa agtgaagttt atgagaaagg tttgggaaag tttgtgaaaa 840 cagacaaaaa ggtcctgctg tctcagttaa tcacattagg ctcccatgag gagaatgata 900 gcctagactg tgccttttgt tcctctagaa ttttggagtt gtgtttcaaa ttatcagtca 960 agatgcatga ggatgtgctc acaagggggc tgaaccttga tgggactaaa actttacact 1020 catcagtgca atcttacctg aatgtgttgt ccatgtgcaa taagattaaa ggttcaaaga 1080 tctttaatac caggaggaac acactattgt ttttagactt aatcatgttg aacttcgttg 1140 ttgatgagat ggtaaaagat agcacagtta tcaggaacct aaagaatgca ggattaatag 1200 ttggacaaat gatattactt gtcaatgatc gggtgttgga catcctcact gctaataagt 1260 tgatcaggca aaaactgacc accaatgaaa agtggctttc aatttgtagc agtgttctta 1320 aaaggtatga tttagagctc tgggaaaagc tgtgttattt aataagagtt cctgacttta 1380 atgaactttt ccaactcgca aaggagttag tctcagacag gcctatgatg aggtattctg 1440 ttcacaaagc agaggaacga caatgttgcc ataaagcaat ggagaacttc actgacgatg 1500 acttcaagat aatgttaaag gccttgtctc atctttcatt aggcttgatc aattcaatga 1560 agacatcatt ttcctctcgg ttacttatta atgagagaga ttattcacga tattttggta 1620 atgtgagact tagggaatgt tatatccaac gattccctat cacaaacaac ataataggtt 1680 tactgtttta ccaaaagaca ggagaaagat ctagatgtta ctcactttat attgcagaaa 1740 atggtgagtt gactgagatc ggatcttttt actgtgatcc taaaagatac tttgtgccta 1800 ttttttctga agctgtgatc acatcaatgt gtgaagaaat gatcaactgg ttgaactttg 1860 attcagagtt ggtgagaata gtatccactc aattaaaaac actcatgtta ctactgctct 1920 gttctccttc gaagagaaat cagacattcc ttcaaggttt gaggtatttt ataatggcat 1980 atgtcaacca agcacaccac attgacctta tgtctaagtt ggcagttgag tgtaagtcta 2040 gctcagaaat ccaattgcaa agattatgtg tcagattgtt tgtttcgatt ttatctggtg 2100 acaatgagat agaatatggg ttcacaagaa gattcaagtt tctactgaac attagttacc 2160 tttgccactt tattacaaaa gaaactccag ataggctaac agatcaaatt aaatgttttg 2220 agaaattctt ggaacccaaa ttgaaattta atagtgtcat tgtgaatccg tcattgaacg 2280 gaaccttgac agaatctcag gagcaccaaa tgatttctag tattgataga ttcttttcca 2340 aagagttgct tgatcaatct gatgtgaagg agcctggtgt ctctagagaa ctacttggat 2400 actgtgtttc attgttcaat agaggcaaat tgagagtgtc aggggatttg aaagtagatc 2460 cctttcgtcc tactttcaca agtactgctt tagacatctc gagcaataaa agtgttgttg 2520 tcccaaaatt agatgaactt ggaaatattg tagataaata taataaacag ttaatggtat 2580 catcatgtgt cacatcactt gtagaaatgt ttaagaccaa aggtaggtac aatttagatc 2640 ctgattctat tgatttcctt gtgttaaaaa acctcacaaa cttggtaagt gcaaatgtac 2700 ctcaagaaaa gtctcaagaa gaattgtcaa cattgtatga agcactgact gaggaccaaa 2760 tttctgcatt cgaacaggtg agggatgaag tacagttagc attacacaaa atgaaaagtt 2820 cagatgctag agaagaaagg ttgcaggatc caaaaagaaa tgagaagaat gcttcaaaag 2880 ggaagatact ggaatctctt tggtcacctc atcaggtaaa cagagccata aaaaatgagg 2940 cctcaatcca tgaaattaaa gattttgatc ctgacatttt agatagtcat cttgttgaaa 3000 aactttgtca tgaggtgtat aattcatcac aaaagtcact gtttttcctt gatgaaccgt 3060 taaaatctgt tccattggaa atgttgttga tcaatttaac taccatagcc tatgaagagg 3120 aagagttctt tgagtgtttt aagtacctat taatacaagg agactttgat caaaagctag 3180 gtacatatga acacaagagt agatcaagat tagggctgag ttcagaggca cttaaggtac 3240 aagagaatgc aagagttagc acaagagaaa gcaatgctga ggcaatagca aaaaaacttg 3300 atagaacttt ctttacaagt gcagctttac gaaatctttg cttttactca gaagattccc 3360 caactgaatt cactagtgta agcaccaaca ctggcaatct gaaatttggg ttaagttata 3420 aagaacaggt tgggtctaac agggagcttt atgtgggaga tcttaacact aagcttatga 3480 ctagattggt agaggatttc tcagaagtgg tcacaggatc aatgaggttc tcttgtttga 3540 attctgagaa ggaatttgaa agggcaattt gtgatatgaa aatggcagta aacaatggtg 3600 actttagtct ttccatggac cactcaaagt ggggacccca catgagccct gctctgtttt 3660 ttacattttt agccaatttg aatcttactg agcccaagag tagaacaagg ctgaaccttg 3720 atcctttact taatatactg aagtggcact tacacaaaac agtagaggtt ccttttaatg 3780 ttgcacaggc ttactgtata gggaagctta aaagaagtct tgggttgatg gaatgtcagt 3840 gttcaagtct cacagaggaa ttttatcata gctaccttca gattcaagat gaaatcccaa 3900 gtcatataat gtctgtactt gacatgggcc aaggcatatt acacaatttg tcagacttgt 3960 atgcattaat aactgaacaa ttccttaatt atgtaataca caaactgttt gatattgatg 4020 tcacttctta cacatctagt gatgaccaaa tttcaatcat gaaattgcca ctgagtacaa 4080 aagaaaatga tgaagatttt gactggttgg aaatcatctg tttccatgag tacctatctt 4140 caaaattgaa caaatttgta agtccaaaga gtgtggtggg gaattttgtt gctgagttca 4200 aatcgagatt ttttgtaatg ggtgaggaaa ctcccttgtt gaccaagttt gtggccgcag 4260 cattacataa tgtgaagtgt aaaacaccaa ctcaattagc agagactatt gataccattt 4320 gtgatcagtg tgtggccaat ggtgtaggag tggatattgt ctcaagaata tcagagaggg 4380 tgaatcgatt gattagctat tctggctata aagagacgcc tttcctgacc attgtcaacc 4440 aagatgtcaa agattggaca gatggatcga ggggttatcg tctccagaga aatatagaga 4500 attcttttgg caatcaggaa ctgcttcgtt tgataaggag gggggcaaga aaagtatttt 4560 tggaaataaa gaagggtcat gtgtttgaag aaaatttgat tggtttgatt ggcagggggg 4620 gtgatgaagc tttaagaggg tttttattgt atgcaggatt tgctgaaaat gacattgttg 4680 aggctttaag gcataaatgg ttgaatccgt ccacttttgg agatttgaga ctggttttaa 4740 ggacaaaaat tatgtctagt aaaagaatct tggaaagaga aagtgtacca agtctgataa 4800 agacactaca atccagaatg tcaaagaact ttataaaggg ggcaaaaaag attttagcag 4860 aatcaataaa taagtcagca tttcagtcat ctgtggcctc aggtttcata gggttctgta 4920 aaagtatggg tagtaaatgt gtgagagacg gcaaaggagg ttttatgtat ctgaaagaat 4980 tgtacaataa tgtgaataag tgtggatgct gtatatgttt ggaatggcca ggtgttgttt 5040 actgtcagga ttctctagca aaaatttcac aatttgcaag atctatttta tgggattact 5100 tcacattagt tctcactaac gcatgtgaaa tcggagaatg ggttttctct gatgtgaaat 5160 ctccttctgc acctcctatt ttaagtaatc caaatctctt ttgggctgtc aagcccaaga 5220 ttcaaaaaca tattgaagat agactaagtc taaatcatat tttacactct attaaaagga 5280 actatcccta tttatttgaa gaacatctag caccgtttat gagtgatttg caattcaatc 5340 agatgatgaa cccatcacat gtcaaattcc tggatgtatg tatagcattg gatatgatga 5400 atgagaatct aggcataata ggtcatcttt tgcgtggtag aaatcatttc atatacatag 5460 ttaaacagag tgagtgtgct tctgcacaca taaggcaatc tgactatgtg gaccatgagc 5520 ttggtttaag tcctcagcaa gtttgctaca attttaaagt tcaatttttg ttttcttcga 5580 tgattgatcc cctcatagtt tctacgtcaa cattaaagac atttttctgg tttaatgagg 5640 ttttaagtat agaggaagaa gatcagatag atttgggaga attgactgac ttcacattgt 5700 ttataaaaac agggcatctg aatagggcca tgacagctga tgacataaca atgggttatg 5760 tgtgttccaa cctcgcagaa gaaataatca cactgaattc ctatggatca ttccaagaat 5820 tcagatcaaa tcatccatcc aagaatgatt tatcagacat cttaaagact ctcactagtg 5880 aatcaataaa actcacatta gacatacaaa ttgtccatat gagaaattct actaagtaca 5940 acattagtag gaagattgtt tatactctta aggcactctg tgctctacca cttgaggact 6000 gcttcactaa agacccagtg gctttggtgg aatccttgga gttgtttgct tctggtgtaa 6060 atggaggaca cctgcagttg gatggtgtaa ccatggtttc agttttgcct ttgctgagag 6120 ggaagaaggc agtgaattta gctcagattc taatggataa cgatttagct gcgaccaatg 6180 atcacaatgt gatggaatct gtaacacttg atttcaccaa atttcatgat gaactaggtg 6240 acaaattctg ctactcatta gttggtcctg aggaccaggg caatccaatt gtcctccaca 6300 acggcatgtt tatgattgat aatcagaagt tgtcttactt aaaggtggag atttttggtg 6360 acaccataat taaggcactt ggggcactgg acagccccag ggagattggg agtcttctac 6420 atgggctctg gccttatctg aaggctacca agcaaatcat taattttgat caaacagact 6480 ttgaaatgat ttatgatctt cacagagttg ttttgttgga atcaattgct cagtttggag 6540 attgggttga atttgccagt tttaaggttg cattcagcaa acattacaaa gacattgttg 6600 ttgctgataa tctaggaaac ttaaggctca agggtgttac ctgcagacta tttagacagc 6660 agcagtccgt tgaagacatt gagtaaacca caccaccccg gggactcccc gcggggggcc 6720 cctgtggggc cccccggggg tgtacccgga cacgatttag tcttctggag gtggagcact 6780 tggttcgatg ggcaccacaa tggatgtggg gagctcttca ccacaaatgt cacaaaaaga 6840 agacttcccc aacattatgt tcaaacattt tagacaaata taatggtcgg aacattttat 6900 tagatttgta ttggcgaacc agcagcacct gcagttgtgt cttccataca gactaggttc 6960 agcctgtctc tttaaaatgg ctacctgttt ggtgctattg actgtttgct gttcatactg 7020 gttagcagac agctttgatt ttgacttgga gttacccatt agatgaaatc tggtgctcca 7080 gtgaggtggt tcacctcaaa gcgtgaaagc aatgcctagg atccccggtg cg 7132 // |
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