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EBI DbfetchID AY216502; SV 2; linear; genomic RNA; STD; VRL; 7053 BP. XX AC AY216502; XX DT 05-JAN-2004 (Rel. 78, Created) DT 10-JAN-2008 (Rel. 94, Last updated, Version 2) XX DE Allpahuayo virus strain CLHP-2472 segment L, complete sequence. XX KW . XX OS Allpahuayo virus OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus; OC New world arenaviruses. XX RN [1] RP 1-7053 RX DOI; 10.1016/j.virol.2003.08.016 RX PUBMED; 14698659. RA Charrel R.N., Lemasson J.J., Garbutt M., Khelifa R., De Micco P., RA Feldmann H., de Lamballerie X.; RT "New insights into the evolutionary relationships between arenaviruses RT provided by comparative analysis of small and large segment sequences"; RL Virology 317(2):191-196(2003). XX RN [2] RP 1-7053 RA Emonet S., de Lamballerie X., de Micco P., Charrel R.N.; RT "Complete sequence determination and analysis of the large RNA segment of RT arenaviruses"; RL Unpublished. XX RN [3] RP 1-7053 RA Charrel R.N., Lemasson J.-J., Garbutt M., Khelifa R., De Micco P., RA Feldmann H., de Lamballerie X.; RT ; RL Submitted (09-JAN-2003) to the EMBL/GenBank/DDBJ databases. RL Unite des Virus Emergents (EA3292, IFR48, IRD UR034), Universite de la RL Mediterranee, Faculte de Medecine, 27 Blvd Jean Moulin, Marseille 13005, RL France XX RN [4] RC Sequence update by submitter RP 1-7053 RA Emonet S., de Lamballerie X., de Micco P., Charrel R.N.; RT ; RL Submitted (10-MAY-2004) to the EMBL/GenBank/DDBJ databases. RL Unite des Virus Emergents (EA3292, IFR48, IRD UR034), Universite de la RL Mediterranee, Faculte de Medecine, 27 Blvd Jean Moulin, Marseille 13005, RL France XX CC On Jan 9, 2008 this sequence version replaced gi:37787697. XX FH Key Location/Qualifiers FH FT source 1..7053 FT /organism="Allpahuayo virus" FT /segment="L" FT /strain="CLHP-2472" FT /mol_type="genomic RNA" FT /country="Peru" FT /db_xref="taxon:144752" FT CDS 31..6636 FT /codon_start=1 FT /product="L protein" FT /note="polymerase" FT /db_xref="GOA:Q6XQI9" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="InterPro:IPR014386" FT /db_xref="UniProtKB/Swiss-Prot:Q6XQI9" FT /protein_id="AAP44538.2" FT /translation="MDVHLIELRDLVRKWVPDDLELSEQKNIMLAQTQIRATVVESLKL FT LSTIVEVDSCKKHSCVHNTSKTVNAILREHKIIGPTLPDVTPDGYCVIGDVLILLEVFV FT RTNQESFEKKFNQDFEKLMQMSADLKKCGVTLVPTIDGRSTYYVDFIPDWVVERLRWLI FT SRLMSSLREDGQEIEELEYERLISSLSSLENQSLGLESLLAMREKGLSYKETLDKLFLE FT GMENKLTVDESRTRIMKMFQIFRTLLESGYLERKYQTTDREDMLKRLRDHEFIVCSKSV FT EYTFDCPNCSVHLYKVLNLLLNQGSRGAPHQCLGEYMKTLSICNKIKSMKILNTRRNTL FT LILDTIMLNKFLDLEKVFGHVVVERVMIMQSLMTVNDRLLSIDVLMEMLEKKMTRNPLW FT FLKVNEKLRKLCPPEVYQSIEEYVHEVDRDHWFELKLTLHQTWPAKPLIDYKGKMRCTC FT VEKDSNNKNQLSDLTEEKFQLLLKKLSSFCLGITNSLKTSAVAKLRVNQPDDYYGKVTC FT SEVFFQSLDKEHSAVLLYQKTGEKSRAYGLAFNNVVTGQYTTEASFYCDPKRFFLPIMS FT DVVLFRMCNEMLSWLDYLSDDVMLEVRTCLYRLVLSILCTPSKRVQVYIQGLRYFIMAF FT VNEFHCTGLLDKLKVTALTESERYCMKLCDDLVVKVLNSVEDENMAKAFKFVLNTSYLC FT HLITKETPDRLTDQIKCFEKFLEPKLDFGSVIVNPDSSCELTAGQEEQFYQGLEKLFTD FT KKLESSYANKPGVCKEVLNVCMSLFNSGALEVKPLLNHDPITPSFTSTALDLSSNKSVV FT VPKLDELGEVLTEYDYSKLVSSVVVDLVEHFKTKGKYVVSPRSLQYKIYKRLSNLVQQR FT AGKGNKESELTEEEFLEQVTAEQLEVINKVETKVSRTLSGIKLSSDTENAKHDDDYHLK FT KLWSKDIMVRIKAETSLHEVKDFNVDTLPFDLYRELVDAIYNDPAANSHYFSERIFNPC FT PLELLIKNLTLKAYKEEDFFECFKYILISSNFDNKVGKYDHKNRSRLGLSSAALLVKDE FT ARISMRESNSESIAKRLDKSFFTNSSLRNLCFYSDESPTERTSVSSNVGKLKFGLSYKE FT QVGGNRELYVGDLNTKLTTRLVEDYAESLTSDMKYTCLNNENEFERALLDMKSVVRQSG FT LAVSMDHSKWGPHMSPALFSLMLRGLDFRLKDGTLIDKEAVVNILSWHIHKMVEVPFNV FT VEAYLKGFIKRGLGLMDRGGATRVEEFMFGYFDQGIVPSHISSVIDMGQGILHNLSDLY FT GLITEQFIVYALDLCYSSSFMAYTSSDDEILLSISNSFKRNDGSMDMDLAIEALEFHYF FT LSDRLNKFVSPKTVAGTFASEFKSRFFIWSQEVPLLTKFVAASLHNVKAKAPSQLAETI FT DTILDQSVANGVSIEIIGAIAPRTNALITYSGHPFNLFLCLEETDVRDWVDGSRGYRLQ FT RSIENAFPDDVLPEIIRSACRKIFYRIQSGTLEEDYIVTTLQQSPDDCLKQMLTSCDVE FT KEAIDDICNYRWLNLRAHGDLRLVLRTKIMTSTRTLQKEEVPSLIKSVQSKLSKNFVRG FT AKKILADAINKSAFQSCISSGFVGVCKSMGSKCVRDGKGGFKYIKDILKEIKHHEKPDC FT HFCKELKGIYCSELLENISEFSRPLFWDYFSLVLSNACELGNWVFCKIEIPKSVYHLNN FT PNHFWPIKPSSHAELEEKVGMNHVLYSIRRNFPVLFDEHISPYLSDLNMLKLNWVQKIR FT FLDICVAIDMTSECLGIISHIIRRKREELYIVKQSELSMSHTRVSLPLERGFNIEPDEV FT CHNFLLQILFESMIHPVLLTTSQFKRYFWYSEVELLPKEALHDLGQFTQFIIDCKVLNS FT SRAMCLDDLDVGYVSSKVKRTDTYLNLSTFMTNLDWENRHEYSSFEDLILSSPSEVFLF FT EITFTFSHIRRSHKFRYDRSTNYILKTKLVIEKSELVNGEDGVYCVTPHSIEYYVSQSS FT GNHISLDGVSLLVLDPLISGRELVNMDELLQNQDVTFSAPSQILSKIKLDFKPFTKEIK FT NKFSYKLIGPDVDMSPLHLDKGAIKEGDRIVSQIEIQVSFKSVITAIELLDEDQRKIFV FT GNLFVYLTSLKSVNRALSMSESDLRLLVENYPSVIEYMLSGCDGWLNCGSFSLIKSKTL FT QCIMLADERGPYRIKGQNCRRLFPTEEAIEIE" FT CDS complement(6710..6997) FT /codon_start=1 FT /product="Z protein" FT /db_xref="GOA:B0BLK0" FT /db_xref="InterPro:IPR003224" FT /db_xref="UniProtKB/Swiss-Prot:B0BLK0" FT /protein_id="ABY59833.1" FT /translation="MGLRYSKEVRDRHGDKDIEGRVPMTLNLPQGLYGRFNCKSCWFVN FT KGLIACGDHYLCLGCLTRMLSRTDFCEICSKPLPKKIIFEDSPSAPPYEP" XX SQ Sequence 7053 BP; 2212 A; 1122 C; 1604 G; 2115 T; 0 other; cgcaccgggg atcctaggct ttccttgatc atggatgttc acttgatcga attgagagat 60 cttgtgagaa agtgggtccc tgatgacctg gaactgtcag aacagaaaaa cattatgtta 120 gcacagacac aaatcagagc aacagttgta gagagcttaa aacttttgtc cacgattgta 180 gaagtagact cctgtaaaaa acactcctgt gtccacaaca ctagcaaaac tgtcaacgca 240 atacttaggg agcacaagat cattgggccc actttaccgg atgtgactcc agatgggtac 300 tgtgtgattg gggatgtatt aatactcctt gaagtgtttg ttagaacaaa tcaagaatca 360 tttgaaaaaa agtttaatca ggattttgag aagttgatgc aaatgagtgc agatctgaaa 420 aagtgtggtg taactcttgt gcctacaata gatggcagaa gtacatatta tgttgatttt 480 attcctgact gggttgtgga aaggttaaga tggttgataa gcagattgat gtcaagtctt 540 agggaggatg gtcaagaaat tgaagagctg gaatatgaga ggctcatcag cagtctatct 600 agtcttgaaa accaaagttt agggcttgaa tcactattag cgatgagaga aaaaggtctt 660 tcctataagg aaacattaga taagttgttt ctagaaggaa tggagaacaa gttgacagtt 720 gatgagtcca gaaccaggat tatgaagatg tttcaaattt ttaggacatt gttagaaagt 780 ggttatctgg agaggaagta tcaaacaaca gatcgagagg acatgttaaa aagattaagg 840 gatcatgaat tcattgtgtg ttctaaaagt gttgagtaca cttttgactg tcccaattgc 900 tctgttcatc tctataaagt gttgaatcta cttttaaatc aaggctcacg aggtgctcct 960 catcagtgtc tgggagaata tatgaagact ttatcgatct gtaataagat taagtcaatg 1020 aaaattttaa acaccagaag gaacactctt ctaattcttg acactataat gctaaacaag 1080 tttttagatc tagaaaaagt atttggtcat gtcgttgtag agagagtcat gatcatgcag 1140 tctttaatga cagtgaatga taggctttta tcaatcgatg tcttaatgga aatgttggag 1200 aaaaagatga ccaggaatcc gttgtggttt ttgaaagtta atgagaaatt aagaaaactt 1260 tgtcctcccg aggtgtatca aagtatagaa gagtatgtac atgaggttga cagggatcac 1320 tggtttgagt tgaaactgac actacatcaa acgtggcctg caaaacccct aattgactat 1380 aagggaaaaa tgaggtgtac ttgtgttgag aaggactcta acaataagaa tcaattgagt 1440 gatttgactg aagaaaaatt tcaactcctt ttaaagaaat tatcaagttt ctgtttgggg 1500 attactaata gcttgaaaac atctgcagtg gcaaaattaa gagtaaatca accagatgat 1560 tattatggga aagttacctg tagtgaagtg ttcttccaga gtcttgataa agagcattca 1620 gcagttctgt tgtaccagaa aactggtgag aaatcaaggg catacggtct tgcttttaac 1680 aatgtggtta caggtcagta tacaacagaa gctagttttt actgtgatcc caaaaggttc 1740 tttctgccta tcatgagtga tgttgtgttg tttagaatgt gtaatgaaat gctcagttgg 1800 ctggattatt taagtgatga tgtcatgtta gaagtaagga catgtctgta tagacttgta 1860 ttgtcaattt tgtgtactcc ttcaaagaga gtgcaagttt atattcaggg gttaaggtat 1920 tttattatgg cctttgttaa tgaattccat tgcactgggt tgcttgacaa gttgaaagtg 1980 actgcactca ctgaatcaga gcgctattgc atgaagttat gtgatgacct tgttgtgaaa 2040 gtattgaata gtgtggagga tgaaaacatg gcaaaagcct tcaagtttgt gttgaacaca 2100 tcttacttat gtcatctcat aacaaaggaa acccctgata ggctgacaga tcaaataaaa 2160 tgcttcgaaa agtttttaga acccaaattg gattttggga gcgtcattgt taatccagac 2220 tcatcctgcg agctaacagc aggacaagaa gaacagtttt atcagggttt ggagaagctt 2280 ttcacagata agaagttgga gtcatcatat gccaacaagc caggtgtttg caaagaggtt 2340 ttgaatgttt gtatgtctct atttaatagt ggcgcgcttg aggttaagcc attgttgaac 2400 cacgatccta taactccttc ctttacgagc actgcattag atttgtccag taataaaagt 2460 gtggtggtac caaaacttga tgaattgggt gaggtattga ctgagtatga ttattctaaa 2520 ctagtttcaa gtgttgtggt ggatctggtt gagcacttta aaaccaaagg aaagtatgtt 2580 gtatccccca ggtctcttca gtataaaatc tacaagagat tatcgaactt agttcagcag 2640 agggcaggga aaggaaataa ggagtcagag ttaactgagg aagagttctt ggaacaggtc 2700 actgcagaac agttggaggt tatcaataag gttgaaacaa aggtgtcaag aacattatca 2760 gggattaaat tgtcatctga tacagaaaat gcaaaacatg atgatgatta ccatctgaag 2820 aaactgtggt ctaaagacat tatggtgagg attaaggcag agacgagctt acatgaagtc 2880 aaagatttta atgttgacac attgccattt gatttataca gagaattggt ggatgcaatt 2940 tacaatgatc cagcagcaaa ttcccattat ttctcggaga gaattttcaa tccatgtcct 3000 ttagagttgc tcatcaagaa tctgacattg aaggcatata aagaagagga tttctttgag 3060 tgtttcaaat acattttgat cagcagtaat tttgacaaca aggtaggaaa atatgatcat 3120 aagaatcgta gtcgtttggg tttgtcaagc gcagcattgc ttgtcaaaga tgaagctaga 3180 atcagtatga gagagagtaa ttcagaatct atagctaaga ggctagataa gagtttcttt 3240 accaactcat cattaaggaa cctctgcttt tactcagatg aatcaccaac agagaggacc 3300 agtgtttcaa gtaatgttgg gaagttgaag tttggcttgt cttacaaaga gcaggtaggt 3360 gggaataggg aattgtatgt aggtgatttg aataccaagc ttaccacgag attggtggag 3420 gactatgctg aatcactgac atcagatatg aagtatactt gccttaataa tgaaaatgag 3480 tttgagagag cattgttaga tatgaaatca gttgtgaggc aaagtggtct agctgtaagc 3540 atggaccatt ccaaatgggg gccacatatg tcaccagcgt tgttctcact gatgttacgg 3600 ggtttagatt tccggcttaa agatggcaca cttatcgata aagaagcagt ggtgaacatt 3660 cttagttggc acattcacaa aatggttgaa gtacctttca atgttgttga agcatattta 3720 aaggggttca taaaaagggg gttgggattg atggatagag gtggtgcgac tagggttgag 3780 gaattcatgt ttggttattt tgatcaagga atcgtaccgt cacacatttc atcagtcatt 3840 gacatgggtc aagggattct acacaatttg tcggatttat atgggttgat aaccgagcaa 3900 ttcatagttt atgctttaga cttgtgttac tcatcttctt tcatggctta cacatcaagt 3960 gatgatgaaa tattgctttc catttctaac agttttaaga gaaatgatgg ttcaatggat 4020 atggacttag caattgaagc acttgagttc cactatttct tatctgatag acttaataaa 4080 tttgtaagtc cgaagactgt tgcaggaacc tttgctagtg aattcaagtc tagatttttt 4140 atctggtcac aagaagtacc cttacttacg aaatttgttg cagcatcact acataatgtg 4200 aaagcaaagg ctccttcgca gttagccgaa acaatagata ctattcttga tcagtctgtt 4260 gcaaatggtg tctccattga aattattggg gcaattgccc cgagaacgaa tgcgcttata 4320 acatatagtg ggcatccatt taatcttttc ttatgcttag aggaaacaga tgtgagagac 4380 tgggttgatg gatcaagagg gtatagattg caaaggtcta tagagaatgc atttcctgat 4440 gatgttctac cagaaattat tcgctctgcc tgcagaaaaa tcttttatag gattcaatca 4500 ggaactttag aagaggacta tattgtgaca acattgcaac aatcgccaga tgattgctta 4560 aaacagatgc taacatcatg tgatgtggag aaagaggcaa tagatgatat atgcaactat 4620 agatggttga atctaagagc tcatggggat cttagactcg ttcttaggac caaaattatg 4680 acatcaacta gaacattaca aaaggaggaa gtcccaagcc tgattaaatc agtgcagtcc 4740 aaactttcaa agaactttgt tcggggggca aagaagatct tagctgacgc aataaacaag 4800 tcagctttcc aaagttgtat ctcttctggc tttgttgggg tctgcaaaag tatgggatca 4860 aaatgtgtta gggatggtaa aggaggattc aagtacatca aagacatttt aaaagaaatt 4920 aaacaccatg agaagcctga ctgtcatttt tgcaaagagc tgaagggtat ttattgtagt 4980 gagcttcttg aaaacatatc agaattttct agacctcttt tctgggatta tttttcattg 5040 gtcctttcga atgcttgtga gttgggtaac tgggtctttt gtaagataga aataccaaaa 5100 agtgtgtacc acttgaataa tcctaaccat ttttggccaa tcaagccatc cagtcatgct 5160 gaattagaag agaaggtggg aatgaatcat gttctgtatt caattagaag aaatttccca 5220 gtgttatttg atgagcatat aagcccttat ttgtcagact tgaatatgtt aaagttgaat 5280 tgggtgcaaa agattagatt tctagacatt tgtgtagcaa ttgacatgac ctcagagtgt 5340 ttgggtatta tatcacacat cattagaagg aaaagagaag agttgtatat tgtgaaacag 5400 agtgaattgt caatgtctca taccagagtt tctcttccac tagagagagg attcaacata 5460 gaacctgatg aagtctgtca caattttctt ttacaaatat tgtttgagtc aatgatacac 5520 ccagtgcttt tgacgactag tcaatttaag aggtactttt ggtacagtga ggttgaactt 5580 ttgcctaagg aggcattgca cgatttagga cagtttactc agttcataat tgattgtaaa 5640 gtgttaaata gctcaagggc aatgtgtctg gatgatctag atgtaggtta tgttagtagt 5700 aaagtcaaga gaacagacac ctacttgaat ttatcaactt tcatgacaaa tcttgactgg 5760 gaaaatagac atgagtactc ttcatttgaa gacttgatcc tgagttcccc atctgaagtc 5820 ttcttatttg agatcacctt cactttttca catattagaa ggagccacaa gtttagatat 5880 gacagatcaa caaattacat tttgaaaacc aaattggtta ttgagaagtc tgaattagtt 5940 aatggggagg atggtgtcta ttgcgtgaca ccgcactcta tagagtatta tgtctcccag 6000 tcatctggta atcacatcag tctagatggt gtgtctttat tggtgttgga ccctctaatc 6060 tcaggtagag aattggtgaa catggatgaa cttttacaaa accaggatgt gacattttct 6120 gctccatcac aaattttaag caagattaaa ttggatttca agcctttcac caaggaaata 6180 aagaataagt tctcctataa gttgatagga cctgatgtag atatgtcacc attgcacctt 6240 gataaagggg caattaaaga aggtgacagg attgtttcac aaattgagat tcaggtgtca 6300 tttaagtctg ttatcacagc aatagagctt ttagatgaag atcaacgtaa gatctttgtg 6360 ggcaatttat ttgtgtattt aacttctctc aagtcagtta acagagcact atccatgtca 6420 gaatcagact tgaggctatt ggtggaaaac tatccaagtg taattgagta tatgttaagt 6480 ggttgcgatg gatggcttaa ttgtggctca ttctcactga tcaaaagtaa aacactacag 6540 tgtatcatgt tggctgatga gagaggtccc tataggatca aaggacaaaa ctgcagaaga 6600 ttgtttccaa cggaggaggc aatagagatc gaataaaccg cctggccccc gggggccggg 6660 ggggcccccg gcgcgccccc ggagggggcg cgcctggggg cctaccggcc tagggttcgt 6720 agggtggtgc tgatgggctg tcttcgaaga tgatcttttt tggcaagggt tttgagcaga 6780 tctcgcagaa gtcggttctg ctcagcattc ttgtcaggca cccaagacaa aggtaatggt 6840 cgccacaggc aatcaagcct ttattcacaa accagcaaga tttgcaattg aacctgccat 6900 agagaccttg aggaagatta agtgtcatgg gcactctccc ctctatgtcc ttgtcaccat 6960 gacgatctct cacttccttg ctatatctta gtcccatttt agaagaatcc acacacaatg 7020 cgtgaacaat aaaagcctaa gatcctcggt gcg 7053 // |
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