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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY178816; SV 1; linear; genomic DNA; STD; PLN; 1346 BP.
XX
AC   AY178816;
XX
DT   01-MAY-2003 (Rel. 75, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Ipomoea leucantha beta-amylase gene, partial cds.
XX
KW   .
XX
OS   Ipomoea leucantha
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons;
OC   asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea.
XX
RN   [1]
RP   1-1346
RX   DOI; 10.1016/S1055-7903(03)00249-5
RX   PUBMED; 15012943.
RA   Rajapakse S., Nilmalgoda S.D., Molnar M., Ballard R.E., Austin D.F.,
RA   Bohac J.R.;
RT   "Phylogenetic relationships of the sweetpotato in Ipomoea series Batatas
RT   (Convolvulaceae) based on nuclear beta-amylase gene sequences";
RL   Mol. Phylogenet. Evol. 30(3):623-632(2004).
XX
RN   [2]
RP   1-1346
RA   Rajapakse S.;
RT   ;
RL   Submitted (13-NOV-2002) to the EMBL/GenBank/DDBJ databases.
RL   Department of Biological Sciences, Clemson University, 132 Long Hall,
RL   Clemson, SC 29634, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1346
FT                   /organism="Ipomoea leucantha"
FT                   /cultivar="PI 540733 (NPGS-USDA accession)"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:129205"
FT   mRNA            join(<1..174,1107..>1346)
FT                   /product="beta-amylase"
FT   CDS             join(<1..174,1107..>1346)
FT                   /codon_start=1
FT                   /product="beta-amylase"
FT                   /db_xref="GOA:Q84LS5"
FT                   /db_xref="HSSP:1FA2"
FT                   /db_xref="InterPro:IPR001371"
FT                   /db_xref="InterPro:IPR001554"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="InterPro:IPR017853"
FT                   /db_xref="UniProtKB/TrEMBL:Q84LS5"
FT                   /protein_id="AAO59451.1"
FT                   /translation="HAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQP
FT                   AEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLNVRPNGVNLNGPPKL
FT                   KMSGLTYLRLSDDLLQTDNFELFKKFVKKMHADL"
XX
SQ   Sequence 1346 BP; 408 A; 257 C; 311 G; 370 T; 0 other;
     catgcggcgg agctcaccgc cggattctac aatgtggcgg gaagagacgg ttatcggcct        60
     attgcgagga tgctggcaag gcaccatgcc actctaaact tcacttgcct tgagatgaga       120
     gactccgaac agcctgccga ggccaagagt gctcctcaag aactcgttca acaggtacca       180
     taaccaaaat tctataatac caaaatgaat aaataaaagt agtcctgaaa ctagcatagt       240
     ggttgctcac tttaccttaa gttatgatcg gaagtggggt tgggtttgat tgtattgtgt       300
     tggtgtaatt tgagtactac taatgtagta aatacaccga gatatatgaa tatgcctaag       360
     tatcgtctag gttcacgtat ataagcttag ataaacgtga cagtgggtcg gatgatccca       420
     aacttatagt aggtttgagt aaaagttcaa aaatcactcc tcaaagcatt taatgcgcct       480
     tatatagagg tgaggggaga cacatgtcgg gaactcggca tgctagctag acacgtgttt       540
     cacatgtatt tggagaggtc gggggctatg ctgatacgtc cacatgcaag gagatgcctg       600
     acgagtccta ctgtgatgtg acgagtataa tgtaattagt cacgcttgtc ttttagcata       660
     aaatgttgtc ccatcagaat aactagtatg ggcattaagg tcgggagttc ccgagctcag       720
     ggcgaatggt gtaatcgata atcataaaag aatgtgttta tccactgact tgggtcagat       780
     cataaccaga tggtgtcaaa tgtggtcggg aaatgtcttt catgaaatac ataatacatg       840
     catgccgagc agatatatgg ttatatgcca gagggatatc tcctattaac aacaatccta       900
     acattgattt ttatcaaaag catagtgcaa tattaatatt aacaagaatg atactacgta       960
     taagataggg acaatccagt caaattagtc aaattggtca aactattcgc ttaagttcat      1020
     tatgtacaat ttagctggtt tatttcctgg cgatctttta gttacttcca acatgctaat      1080
     taaagttgag ttgaatgatt gtgcaggtgt tgagcagcgg atggaaagag tatatcgatg      1140
     tggcaggtga gaatgcactg ccaagatatg atgccacggc atacaaccaa atgcttctga      1200
     acgtcaggcc aaacggcgtc aaccttaacg gccctcccaa gctcaagatg tctggcttga      1260
     catatctccg tttgtccgac gatctgttac agacagacaa cttcgaactc ttcaagaaat      1320
     tcgtcaagaa gatgcacgct gatctg                                           1346
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