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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY178805; SV 1; linear; genomic DNA; STD; PLN; 1337 BP.
XX
AC   AY178805;
XX
DT   01-MAY-2003 (Rel. 75, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Ipomoea lacunosa beta-amylase gene, partial cds.
XX
KW   .
XX
OS   Ipomoea lacunosa
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons;
OC   asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea.
XX
RN   [1]
RP   1-1337
RX   DOI; 10.1016/S1055-7903(03)00249-5
RX   PUBMED; 15012943.
RA   Rajapakse S., Nilmalgoda S.D., Molnar M., Ballard R.E., Austin D.F.,
RA   Bohac J.R.;
RT   "Phylogenetic relationships of the sweetpotato in Ipomoea series Batatas
RT   (Convolvulaceae) based on nuclear beta-amylase gene sequences";
RL   Mol. Phylogenet. Evol. 30(3):623-632(2004).
XX
RN   [2]
RP   1-1337
RA   Rajapakse S.;
RT   ;
RL   Submitted (13-NOV-2002) to the EMBL/GenBank/DDBJ databases.
RL   Department of Biological Sciences, Clemson University, 132 Long Hall,
RL   Clemson, SC 29634, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1337
FT                   /organism="Ipomoea lacunosa"
FT                   /cultivar="USVL 62.98 (US Vegetable Laboratory, USDA
FT                   accession)"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:89647"
FT   mRNA            join(<1..174,1098..>1337)
FT                   /product="beta-amylase"
FT   CDS             join(<1..174,1098..>1337)
FT                   /codon_start=1
FT                   /product="beta-amylase"
FT                   /db_xref="GOA:Q84LT6"
FT                   /db_xref="HSSP:1FA2"
FT                   /db_xref="InterPro:IPR001371"
FT                   /db_xref="InterPro:IPR001554"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="InterPro:IPR017853"
FT                   /db_xref="UniProtKB/TrEMBL:Q84LT6"
FT                   /protein_id="AAO59440.1"
FT                   /translation="HAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQP
FT                   AEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLNVRPNGVNLNGPPKL
FT                   KMSGLTYLRLSDDLLQTDNFELFKKFVKKMHADL"
XX
SQ   Sequence 1337 BP; 402 A; 258 C; 313 G; 364 T; 0 other;
     catgcggcgg agctcaccgc cggattctac aatgtggcgg gaagagacgg ttatcggcct        60
     attgcgagga tgctggcaag gcaccatgcc actctaaact tcacttgcct tgagatgaga       120
     gactccgaac agcctgccga ggccaagagt gctcctcaag aactcgttca acaggtacca       180
     taaccaaaat tctataatac caaaatgaat aaataaaagt agtcctgaaa ctagcatagt       240
     ggttgctcac tttaccttaa gttatgatcg gaagtggggt tgggtttgat tgtattgtgt       300
     tggtgtaatt tgagtactac taatgtagta aatacaccga gatatatgaa tatgcctaag       360
     tatcgtctag gttcacgtat acaagcttag gtaaacgtga cagtgggccg gatgatccca       420
     aacttatagt aggtttgagt aaaagttcaa aaatcactcc tcaaagcatt taatgcgctt       480
     tatatagagg tgagggggga cacatgtcgg gaactcggca tgctagctag acacgtgttt       540
     cacatgtatt tggagaggtc gggggctatg ctgatacgtc cacatgcaag gagatgcctg       600
     acgagtccta ctgtgatgtg acgagtataa tgtaattagt cacgcttgtc ttttagcata       660
     aaatgttgtc ccatcagaat aactggtatg ggcattaagg ttgggagttc ccgagctcag       720
     ggcgaattgt gcaatcgata atcataaaag aatgtgttta tccactgact tgggtcagat       780
     cataaccaga tggtgtcaaa tgtggtcggg aaatgtcttt catgaaatac ataatacatg       840
     catgccgagc agatatatgg ttatatgcca gagggatatc tcctattaac aacaatccta       900
     acattgattt ttatcaaaag catagtgcaa tattaatatt aacaagaatg atactaagta       960
     taagataggg acaatccagt caagttggtc aaactattcg cttaagttca ctatgtacaa      1020
     tgtagctagt ttatttcccg gcgatctttt agttacttcc aacatgctaa ttaaagttga      1080
     gttgaatgat tgtgcaggtg ttgagcagcg gatggaaaga gtatatcgat gtggcaggtg      1140
     agaatgcact gccaagatat gatgccacgg catacaacca aatgcttctg aacgtcaggc      1200
     caaacggcgt caaccttaac ggccctccca agctcaagat gtctggcttg acatatctcc      1260
     gtttgtccga cgatctgtta cagacagaca acttcgaact cttcaagaaa ttcgtcaaga      1320
     agatgcacgc tgatctg                                                     1337
//
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