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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY150453; SV 1; linear; mRNA; STD; PLN; 1144 BP.
XX
AC   AY150453;
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DT   24-SEP-2002 (Rel. 73, Created)
DT   24-SEP-2002 (Rel. 73, Last updated, Version 1)
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DE   Arabidopsis thaliana putative pectin acetylesterase (At5g45280) mRNA,
DE   complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1144
RA   Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M.,
RA   Quach H.L., Tang C., Toriumi M., Wallender E.K., Wong C., Wu H.C., Yu G.,
RA   Yuan S., Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J.,
RA   Jones T., Kamiya A., Kawai J., Kim C.J., Narusaka M., Nguyen M., Palm C.J.,
RA   Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Tripp M.G., Wu T.,
RA   Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   "Arabidopsis Open Reading Frame (ORF) Clones";
RL   Unpublished.
XX
RN   [2]
RP   1-1144
RA   Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M.,
RA   Quach H.L., Tang C.C., Toriumi M., Wallender E.K., Wong C., Wu H.C., Yu G.,
RA   Yuan S., Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J.,
RA   Jones T., Kamiya A., Kawai J., Kim C.J., Narusaka M., Nguyen M., Palm C.J.,
RA   Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Tripp M.G., Wu T.,
RA   Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   ;
RL   Submitted (13-SEP-2002) to the EMBL/GenBank/DDBJ databases.
RL   Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA
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CC   The RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length  cDNA'): Seki,M., Narusaka,M.,  Ishida,J.,
CC    Satou,M.,  Kamiya,A., Sakurai,T., Carninci,P.,  Kawai, J.,
CC   Hayashizaki,Y.  and  Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Yamada,K.,
CC   Chan,M.M., Chang,C.H., Dale,J.M., Hsuan,V.W., Lee,J.M.,
CC   Quach,H.L., Tang,C.C., Toriumi,M., Wallender,E.K., Wong,C.,
CC   Wu,H.C.,  Yu,G., Yuan,S., Chen,H., Cheuk,R., Jones,T., Kim,C.J.,
CC   Nguyen,M.,  Palm,C.J., Shinn,P., Southwick,A., Tripp,M.G., Wu,T.,
CC   Davis,R.W., Ecker,J.R. and Theologis,A.
CC   Yamada,K. (SSP/PGEC) and Seki, M. (RIKEN GSC) contributed equally
CC   to this work.  Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP
CC   /PGEC) contributed equally to this work as PIs.
CC   Annotation is based on the January 2002 version of the Arabidopsis
CC   genome submitted to GenBank.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1144
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="U10636"
FT                   /note="This clone is in pUNI 51. ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1113
FT                   /codon_start=1
FT                   /gene="At5g45280"
FT                   /product="putative pectin acetylesterase"
FT                   /db_xref="GOA:Q93ZX9"
FT                   /db_xref="InterPro:IPR004963"
FT                   /db_xref="UniProtKB/TrEMBL:Q93ZX9"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="AAN12894.1"
FT                   /translation="MTWLKQMWSSILVLAVVVIGARAVPITYLESAVAKGAVCLDGSAP
FT                   AYHFDKGSGSGVNNWIVHMEGGGWCTDIATCVQRKSTMKGSSKLMNKDFGFSGILGGKQ
FT                   STNPDFYNWNRIKVRYCDGSSFTGDIEAVDPTHKLFFRGARVWRAVIDDLMAKGMSNAQ
FT                   NAILSGCSAGALAAILHCDQFKSTLPKTAKVKCVSDAGYFIHGKDITGGSYIQSYYAKV
FT                   VATHGSAKSLPASCTSSMKPDLCFFPQYVAKTLQTPLFVINAAFDSWQIKNVLAPTSVD
FT                   KSKAWKTCKLDLKKCTAAQLQTVQETKCWLRWRLFDPRRRTDCSWTRAMLIAKVEALPL
FT                   GPATKVPQSRIRKWLRRLEIGSLRGVRFRT"
FT   3'UTR           1114..1144
FT                   /gene="At5g45280"
XX
SQ   Sequence 1144 BP; 289 A; 255 C; 292 G; 308 T; 0 other;
     atgacgtggc taaaacaaat gtggtcaagc attttagtgc tagccgtggt ggtgatcgga        60
     gccagagctg tgcccatcac gtatcttgaa tctgcagtgg ctaaaggagc tgtgtgtttg       120
     gatggtagcg cgccagcata ccatttcgat aagggatcgg gctcaggagt gaacaattgg       180
     atcgttcata tggaaggagg aggatggtgc actgatatag ctacatgcgt tcaacgtaaa       240
     agtacaatga agggttcttc taagcttatg aacaaagact ttggtttctc cggtatcttg       300
     ggtggcaagc aaagcaccaa tccagacttt tacaattgga atagaatcaa agttcggtat       360
     tgcgatggtt catctttcac cggtgatata gaagctgttg atccgacgca caagctgttc       420
     tttcgcggtg ctagggtttg gcgtgcggtg atcgatgatc ttatggctaa gggaatgagc       480
     aacgctcaaa acgctatact ctccggttgt tcagctggag cattggctgc gattctacat       540
     tgcgaccagt tcaagtccac tctccctaaa acggctaagg tcaaatgtgt ttctgacgct       600
     ggttacttca tccacggtaa ggatatcact ggaggatctt acatccaatc ctactacgcc       660
     aaagtcgtag cgacccacgg atctgcaaag agtctacctg cttcttgcac ctcaagtatg       720
     aagcctgatt tgtgtttctt ccctcaatac gttgctaaga ccttacaaac accgcttttc       780
     gtcatcaatg ccgccttcga ttcttggcag atcaagaatg tattggcacc aacctctgtt       840
     gataaaagca aagcatggaa gacttgtaag cttgatctta agaagtgtac ggccgctcag       900
     cttcaaaccg ttcaagagac caagtgttgg ctgcgttggc gcctgttcga tccgcgacga       960
     cgaacggatt gttcttggac tcgtgccatg ctcattgcca aggtggaagc gctgccactt      1020
     ggtccggcga caaaggtccc acagtcgcga atacgaaaat ggctaaggcg gttggagatt      1080
     ggttctttga gaggagtacg tttcagaacg tagattgttc atcgcttaat tgcaacccta      1140
     cttg                                                                   1144
//
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