EBI Dbfetch

ID   AY140036; SV 1; linear; mRNA; STD; PLN; 2113 BP.
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AC   AY140036;
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DT   04-SEP-2002 (Rel. 73, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 2)
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DE   Arabidopsis thaliana unknown protein mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-2113
RA   Tripp M., Southwick A., Karlin-Neumann G., Nguyen M., Miranda M.,
RA   Palm C.J., Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R.,
RA   Chung M.K., Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C., Lin J.,
RA   Liu S.X., Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M.,
RA   Shinn P., Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RT   ;
RL   Submitted (12-AUG-2002) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
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CC   e-mail for correspondence: arab@sequence.stanford.edu
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Sh inozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Tripp,M.,
CC   Southwick,A., Nguyen,M., Palm,C.J., Jones,T., Wu,T., Chen,H.,
CC   Cheuk,R., Chan,M.M., Chang,C.H., Dale,J.M., Deng,J.M., Hsuan,V.W.,
CC   Lee,J.M., Kim,C.J., Quach,H.L., Shinn,P., Tang,C.C., Toroumi,M.,
CC   Wallender,E.K., Wong,C., Wu,H.C., Yamada,K., Yu,G., Yuan,S.,
CC   Ecker,J., Theologis,A. and Davis,R.W.
CC   Tripp,M. (SSP/Stanford) and Seki,M. (RIKEN GSC) contributed equally
CC   to this work.  Shinozaki,K. (RIKEN GSC) and Davis,R.W.
CC   (SSP/Stanford) contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2113
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="4"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL09-83-M20 (R25065)"
FT                   /note="This clone is in pBluescript ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             154..1731
FT                   /codon_start=1
FT                   /product="unknown protein"
FT                   /note="unannotated coding sequence from chr4"
FT                   /db_xref="GOA:Q8L707"
FT                   /db_xref="HSSP:1KWS"
FT                   /db_xref="InterPro:IPR005027"
FT                   /db_xref="UniProtKB/TrEMBL:Q8L707"
FT                   /protein_id="AAM98177.1"
FT                   /translation="MKLSALHQSYLNRRSNSFRSPTSLDSSVDGSGKSLIAVFWLILHC
FT                   LCCLISLVLGFRFSRLVFFFLFSTSSTNLYSLPFRPDLPVKHLDVHTIGRTLDPGANGT
FT                   TVVATATKSSRVVVGRHGIRIRPWPHPNPVEVMKAHQIIGRVQKEQKMIFGMKSSKMVI
FT                   AVTPTYVRTFQALHLTGVMHSLMLVPYDLVWIVVEAGGATNETGLIIAKSGLRTIHVGI
FT                   DQRMPNTWEDRSKLEVFMRLQALRVVREEKLDGIVMFADDSNMHSMELFDEIQNVKWFG
FT                   TVSVGILAHSGNAEEMVLSMEKRKEMEKEEEEESSSLPVQGPACNSTDQLIGWHIFNTL
FT                   PYAGKSAVYIDDVAAVLPQKLEWSGFVLNSRLLWEEAENKPEWVKDFGSLNENEGVESP
FT                   LSLLKDPSMVEPLGSCGRQVLLWWLRVEARADSKFPPGWIIDPPLEITVAAKRTPWPDV
FT                   PPEPPTKKKDQMPLSQGNTVVVIPKQQQHPTKIRKPKRKSKKSKHEPRPTDTTTQVYSS
FT                   SSKHQERN"
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SQ   Sequence 2113 BP; 606 A; 371 C; 513 G; 623 T; 0 other;
     atggtggtgg tggtgagaga gcagcaacaa cagcaagaag agaaagcgat aatcgaactg        60
     attaagatcg tgaaatccaa gtaatctctg ttgcttaatc tcagatcttt ttgataagga       120
     gaaggaagca gaagaaagag gtcaacgaag aagatgaagc tctctgcttt acatcagagt       180
     tacttaaatc gccggagtaa tagcttcaga tctccgacgt ctcttgattc ttccgttgat       240
     ggctccggga agtctttaat cgctgtgttt tggcttatcc tgcactgtct ttgttgcttg       300
     attagtctag ttctcggctt tcgattctcc agattagtct tcttcttcct cttctctact       360
     tcttcaacca atctctactc tcttccgttt cgtcctgact tacctgtgaa acacctcgat       420
     gttcacacaa tcggccgtac tctcgatccc ggagctaacg gaacgacggt ggtggcgacg       480
     gcgacgaaaa gctctcgtgt tgttgttgga agacacggga tccggatccg tccttggccg       540
     catccgaatc ccgttgaggt aatgaaagct catcagatca ttgggagagt tcaaaaagag       600
     caaaagatga tctttgggat gaaaagtagt aagatggtta tagctgtgac accgacttat       660
     gtgaggactt ttcaagcttt gcatttgact ggtgtgatgc attctttgat gcttgttcct       720
     tatgatctgg tttggatcgt tgttgaagct ggtggtgcta ctaatgagac cggtttgatt       780
     attgcaaaat caggacttag gaccattcat gttgggattg atcagagaat gcctaatact       840
     tgggaagatc gtagtaaatt agaagtcttt atgagacttc aagctttgag agttgtgagg       900
     gaagagaagc ttgatgggat tgtgatgttt gcggatgata gtaatatgca tagtatggag       960
     ttgtttgatg agattcagaa tgtgaagtgg tttggtactg tttctgttgg gatattggct      1020
     cattcaggaa atgcggaaga gatggttttg tcgatggaaa agaggaaaga gatggagaaa      1080
     gaggaagaag aggagagctc ttcgttacct gtacagggtc ctgcttgtaa ctcaactgat      1140
     cagttgattg gttggcatat tttcaataca ttgccatatg cggggaagag tgcagtttat      1200
     atagatgatg ttgctgcggt tttgcctcaa aaactagagt ggtctgggtt tgtgttgaac      1260
     tcgagattgc tttgggagga agctgagaat aagccagagt gggttaagga ctttgggtcg      1320
     ttgaatgaga atgaaggtgt ggagagtcct ttgtctctgt tgaaggatcc ttcaatggtg      1380
     gagcctcttg gaagctgtgg aagacaagtt ctgctatggt ggcttcgagt agaagcacgc      1440
     gctgatagca aattccctcc cggatggata attgatcctc cgttagagat cacagttgcg      1500
     gctaaacgca ctccatggcc agatgttcct cctgagccac caactaaaaa gaaagatcaa      1560
     atgccattat cccaaggcaa caccgtcgtg gtaataccaa agcagcaaca acatccaacg      1620
     aaaatccgaa aaccgaaacg caaaagtaag aaaagtaaac acgaacctag accaaccgat      1680
     acaacaacac aagtttattc atcttcgtct aagcatcaag aaagaaactg agaaaagaag      1740
     aaaaaagctt ttgagagttc aagagatttt cttctactat tattattcat ttgttgccaa      1800
     agtttttaga gaaaactcag agatcatctt ctcctccaga taccgcaaat attacaacta      1860
     acggagagga aaacaaaacc gggacagttt agattatgac aatggagctc ccaaaaaagg      1920
     tatacagggt ttttcgggga atgatgatca ttcgtttttc aactatcgtt ttattttttg      1980
     gtcctttaaa acttgtcttt attagtaaca aagattgttt gtttcaatgt tcttgagggt      2040
     tacaaaaagt gtagaaacaa aactttgggt tgtatagttt tgtaagcata tttctcaatt      2100
     catttatgtt ttc                                                         2113
//