EBI Dbfetch

ID   AY136463; SV 1; linear; mRNA; STD; PLN; 1853 BP.
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AC   AY136463;
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DT   29-AUG-2002 (Rel. 72, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 2)
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DE   Arabidopsis thaliana putative beta-amylase (At2g32290) mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1853
RA   Southwick A., Nguyen M., Tripp M., Palm C.J., Jones T., Wu T., Carninci P.,
RA   Chen H., Cheuk R., Chan M.M., Chang C.H., Dale J.M., Deng J.M.,
RA   Hayashizaki Y., Hsuan V.W., Lee J.M., Ishida J., Kamiya A., Kawai J.,
RA   Kim C.J., Narusaka M., Quach H.L., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Tang C.C., Toroumi M., Wallender E.K., Wong C., Wu H.C., Yamada K., Yu G.,
RA   Yuan S., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RT   ;
RL   Submitted (25-JUL-2002) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
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CC   e-mail for correspondence: arab@sequence.stanford.edu
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Sh inozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Southwick,A.,
CC   Nguyen,M., Tripp,M., Palm,C.J., Jones,T., Wu,T., Chen,H., Cheuk,R.,
CC   Chan,M.M., Chang,C.H., Dale,J.M., Deng,J.M., Hsuan,V.W., Lee,J.M.,
CC   Kim,C.J., Quach,H.L., Shinn,P., Tang,C.C., Toroumi,M.,
CC   Wallender,E.K., Wong,C., Wu,H.C., Yamada,K., Yu,G., Yuan,S.,
CC   Ecker,J., Theologis,A. and Davis,R.W.
CC   Southwick,A. (SSP/Stanford) and Seki,M. (RIKEN GSC) contributed
CC   equally to this work.  Shinozaki,K. (RIKEN GSC) and Davis,R.W.
CC   (SSP/Stanford) contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1853
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="2"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL09-62-H23 (R24930)"
FT                   /note="This clone is in pBluescript ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             24..1757
FT                   /codon_start=1
FT                   /gene="At2g32290"
FT                   /product="putative beta-amylase"
FT                   /db_xref="GOA:Q8L762"
FT                   /db_xref="HSSP:1UKO"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="UniProtKB/TrEMBL:Q8L762"
FT                   /protein_id="AAM97128.1"
FT                   /translation="MTSVLGMMNPNLINGRNLHKGSSIFVQDKETKKRVQWRLSIKEGS
FT                   LRTHQATASSATEPKATEFNTTTYEDKMLTNYVPVYVMLQLGVITNDNVLENEESLKKQ
FT                   LKKLKQSQVDGVMVDVWWGIVESKGPKQYQWSAYRNLFAIVQSFGLKLQAIMSFHRCGG
FT                   NIGDDVNIPIPKWVLEIGDSNPDIFYTNKSGNRNKECLSLSVDNLSLFRGRTAVEMYRD
FT                   YMKSFRENMEDFISSGVIIDIEVGLGPAGELRYPSYSETQGWVFPGIGEFQCYDKYLRS
FT                   DYEEEVRRIGHPEWKLPENAGEYNSVPGETEFFEYSNGTYLKEEGNFFLSWYSKKLLLH
FT                   GDQILDEANKVFLGCKLKIAAKVSGIHWWYKTESHAAELTAGYYNLKNRDGYRAIAKIM
FT                   RRHHAILNFTCLEMKNTEQPAKAKSGPQELVQQVLSSGWREGIEVAGENALPRFDRNGY
FT                   NQIILNARPNGVNQDGKPRMFGFTYLRLSDKLLNEPNFSTFKMFLKRMHANQEYCSEPE
FT                   RYNHELLPLERSRNDESLEMFMEETEPFDPFPWLDETDMSIRPFESVLSLLRSTFLRKK
FT                   S"
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SQ   Sequence 1853 BP; 640 A; 317 C; 423 G; 473 T; 0 other;
     agttccgtca agtgcaaggt accatgacaa gcgtattagg aatgatgaac cctaatctga        60
     tcaacggaag aaatctccac aaaggatctt caatttttgt acaagataaa gaaactaaaa       120
     aacgagtcca atggagatta tcaatcaagg agggatctct aagaacgcat caagccactg       180
     cttcttctgc aacagaacca aaggcgacag agttcaatac gacgacgtat gaagacaaaa       240
     tgttgaccaa ctatgttcct gtctacgtca tgcttcagct tggagtcatc acgaacgata       300
     acgttcttga aaacgaagag agtctcaaga aacagctcaa gaaactgaaa caaagtcaag       360
     tagatggagt gatggttgac gtatggtggg gaatcgttga atcaaaaggt ccaaagcaat       420
     atcaatggag tgcttataga aacttgtttg cgatcgtaca aagctttgga ctaaagttac       480
     aagctataat gtcgtttcat agatgtggag gcaacatagg agacgatgtc aacatcccga       540
     taccgaaatg ggtactcgaa atcggggatt cgaatccgga tatcttctat acgaacaaga       600
     gtggtaatag aaacaaagag tgtttgtctc tctctgtaga taacttgtct ctcttcagag       660
     gacgaacagc tgttgagatg tatagagact acatgaagag ctttagagag aacatggaag       720
     atttcataag ctctggagtt ataatagaca ttgaagtagg gcttggtcct gctggagagc       780
     ttagatatcc ttcttacagt gagactcaag gatgggtttt tccaggaatt ggggaatttc       840
     aatgttatga caagtatcta agatcagact atgaagaaga agttagaaga atcgggcatc       900
     cagagtggaa acttccggaa aacgcaggcg aatacaacag tgttccagga gaaacagagt       960
     ttttcgagta ctcgaatggg acttacctta aggaagaagg aaatttcttc ttgtcatggt      1020
     actccaaaaa gttacttctc catggtgatc agattcttga tgaagctaat aaagtatttc      1080
     tcgggtgtaa actcaagata gcagcaaaag tctctggaat ccattggtgg tacaaaactg      1140
     aaagtcatgc tgcagaactt acggcgggtt attacaatct caaaaacaga gatggttatc      1200
     gtgcgattgc gaaaataatg cgtagacatc acgctatctt gaatttcact tgtctagaga      1260
     tgaaaaacac agagcaacca gcaaaagcta agagtggacc tcaagaactt gttcaacaag      1320
     ttttgagctc tggatggaga gaagggattg aagttgcggg cgaaaacgcg cttccaagat      1380
     tcgatagaaa tggatataac cagatcatac taaacgcaag gcctaatgga gttaaccaag      1440
     atggtaaacc gaggatgttt gggttcacat atctcagact gtctgataaa cttctcaatg      1500
     aaccaaattt ctcaacgttt aaaatgttct tgaaacgaat gcatgcgaac caagagtatt      1560
     gttcagagcc tgaaaggtat aatcacgagc tgcttccgtt ggaaagatcg agaaacgatg      1620
     aatccttgga gatgtttatg gaagaaacag aaccatttga tccatttcca tggctggacg      1680
     agacagacat gagtattaga ccctttgaga gtgtactgtc tctattgcga agcacatttt      1740
     tgagaaagaa gtcctagaga atatgctaag gggaaattct ataaacgtat aagatttctg      1800
     aagtaaatat gtaaagattt gagataaata tataaaagta aataattcat cct             1853
//