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EBI DbfetchID AY117247; SV 1; linear; mRNA; STD; PLN; 1281 BP. XX AC AY117247; XX DT 18-JUN-2002 (Rel. 72, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 3) XX DE Arabidopsis thaliana putative sarcosine oxidase (At2g24580) mRNA, complete DE cds. XX KW FLI_CDNA. XX OS Arabidopsis thaliana (thale cress) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; OC eurosids II; Brassicales; Brassicaceae; Arabidopsis. XX RN [1] RP 1-1281 RA Yamada K., Banh J., Chan M.M., Chang C.H., Chang E., Dale J.M., Deng J.M., RA Goldsmith A.D., Lee J.M., Onodera C.S., Quach H.L., Tang C., Toriumi M., RA Wu H.C., Yamamura Y., Yu G., Bowser L., Carninci P., Chen H., Cheuk R., RA Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., RA Kawai J., Kim C., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M., RA Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., Southwick A., RA Shinozaki K., Davis R.W., Ecker J.R., Theologis A.; RT "Arabidopsis Open Reading Frame (ORF) Clones"; RL Unpublished. XX RN [2] RP 1-1281 RA Yamada K., Banh J., Chan M.M., Chang C.H., Chang E., Dale J.M., Deng J.M., RA Goldsmith A.D., Lee J.M., Onodera C.S., Quach H.L., Tang C.C., Toriumi M., RA Wu H.C., Yamamura Y., Yu G., Bowser L., Carninci P., Chen H., Cheuk R., RA Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., RA Kawai J., Kim C., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M., RA Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., Southwick A., RA Shinozaki K., Davis R.W., Ecker J.R., Theologis A.; RT ; RL Submitted (03-JUN-2002) to the EMBL/GenBank/DDBJ databases. RL Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA XX CC The RIKEN Genomic Sciences Center (GSC) members carried out the CC collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN CC Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J., CC Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai, J., CC Hayashizaki,Y. and Shinozaki,K. CC The Salk, Stanford, PGEC (SSP) Consortium members constructed and CC sequenced the pUNI (ORF) clones using the RAFL cDNAs: Yamada,K., CC Banh,J., Chan,M.M., Chang,C.H., Chang,E., Dale,J.M., Deng,J.M., CC Goldsmith,A.D., Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C., CC Toriumi,M., Wu,H.C., Yamamura,Y., Yu,G., Bowser,L., Chen,H., CC Cheuk,R., Jones,T., Karlin-Neumann,G., Kim,C., Lam,B., Lin,J., CC Miranda,M., Nguyen,M., Palm,C.J., Shinn,P., Southwick,A., CC Davis,R.W., Ecker,J.R. and Theologis,A. CC Yamada,K. (SSP/PGEC) and Seki, M. (RIKEN GSC) contributed equally CC to this work. Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP CC /PGEC) contributed equally to this work as PIs. CC Annotation is based on the January 2002 version of the Arabidopsis CC genome submitted to GenBank. XX FH Key Location/Qualifiers FH FT source 1..1281 FT /organism="Arabidopsis thaliana" FT /chromosome="2" FT /mol_type="mRNA" FT /clone="U18888" FT /note="This clone is in pUNI 51. ecotype: Columbia" FT /db_xref="taxon:3702" FT CDS 1..1251 FT /codon_start=1 FT /gene="At2g24580" FT /product="putative sarcosine oxidase" FT /db_xref="GOA:Q9SJA7" FT /db_xref="HSSP:1EL5" FT /db_xref="InterPro:IPR006281" FT /db_xref="UniProtKB/Swiss-Prot:Q9SJA7" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAM51322.1" FT /translation="MEYSDDGRFDVIVVGAGVMGSSAAYQLAKRGQKTLLLEQFDFLHH FT RGSSHGESRTIRATYPEDYYYSMVSESTRLWAAAQSEIGYKVHFPTQQFDMGPADQQSL FT LSVVATCQKHGLAHRVMDSHAVSEHFSGRISIPENWIGVSTELGGIIKPTKAVSMFQTL FT AIGHGAILRDNTKVANIKRDGESGEGVIVCTVKGDKFYGKKCIVTAGAWISKLVKTVAG FT IDFPVEPLETTVCYWRIKEGHEEKFTIDGEFPTFASYGAPYVYGTPSLEYPGLIKVAVH FT GGYWCDPDKRPWGPGVKLEELKEWIKERFGGMVDSEGPVATQLCMYSMTPDEDFVIDFL FT GGEFGRDVVVGGGFSGHGFKMAPAVGRILADMAMEVEAGGGGVEMKQFSLRRFEDNPKG FT NAKEYPDQVILDVPLKH" FT 3'UTR 1252..1281 FT /gene="At2g24580" FT misc_difference 1272..1273 FT /gene="At2g24580" FT /replace="ctg" FT /note="compared to genomic sequence" XX SQ Sequence 1281 BP; 328 A; 247 C; 392 G; 314 T; 0 other; atggaatatt ccgacgacgg cagattcgac gtgattgtcg ttggagcagg agttatggga 60 agctccgccg cgtatcagct ggcaaaaaga ggccagaaga ctcttttgtt agagcaattc 120 gatttcctcc atcaccgtgg ctcttctcac ggcgagtcac gcaccatacg tgccacttac 180 ccggaggatt actactactc catggtttcc gagtcgactc ggttatgggc tgcggctcag 240 tccgagattg gatacaaagt tcattttcca actcaacaat tcgacatggg tccggcagat 300 cagcagagtc tcctctccgt tgtggccacg tgtcaaaaac acgggctagc tcatcgggtt 360 atggattctc atgcagtttc cgagcatttc tccgggagga ttagtatccc ggagaattgg 420 atcggagttt cgacggaact tggtgggatt atcaaaccca ccaaggccgt ctccatgttt 480 cagacgcttg cgattggaca tggtgccatc ttaagagaca acaccaaagt tgcaaacata 540 aagagagatg gtgaaagtgg ggaaggggta atagtctgca cggtgaaagg agataagttc 600 tacggtaaaa aatgcattgt aaccgcgggt gcatggataa gtaagctggt gaaaacggtg 660 gccgggatag attttccggt ggagcccctt gagactacgg tgtgttattg gagaatcaaa 720 gaaggccacg aggagaaatt cacgatagac ggagagtttc cgactttcgc gtcatacgga 780 gctccgtatg tgtacggaac tccgtctttg gagtatccgg gactgatcaa agtggcggtt 840 cacggtggtt attggtgcga tccggataag aggccatggg ggccaggagt gaagttagag 900 gagcttaaag agtggataaa ggagagattt ggagggatgg ttgattccga aggacccgtg 960 gcgactcagc tttgtatgta ttcgatgaca ccggacgagg atttcgtgat tgattttctt 1020 ggaggggagt ttgggagaga tgtggtggta ggcggcgggt tttccggtca tggttttaag 1080 atggcgccgg cggtggggag gatactggcg gatatggcga tggaggtgga ggccggaggt 1140 ggaggagttg agatgaaaca gtttagtctc cgacggtttg aagataatcc taaaggaaat 1200 gcaaaggagt atcctgacca agtgatactt gatgtcccat tgaaacatta aactttgtta 1260 caaaatgtca acgctgaatt a 1281 // |
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