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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY114724; SV 1; linear; mRNA; STD; PLN; 1022 BP.
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AC   AY114724;
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DT   12-JUN-2002 (Rel. 72, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 2)
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DE   Arabidopsis thaliana putative endochitinase (At2g43610) mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1022
RA   Tripp M., Southwick A., Karlin-Neumann G., Nguyen M., Miranda M.,
RA   Palm C.J., Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R.,
RA   Chung M.K., Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C., Lin J.,
RA   Liu S.X., Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M.,
RA   Shinn P., Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RT   ;
RL   Submitted (22-MAY-2002) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
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CC   e-mail for correspondence: arab@sequence.stanford.edu
CC   The RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length  cDNA'): Seki,M., Narusaka,M.,  Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai, J.,
CC   Hayashizaki,Y.  and  Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Tripp,M.,
CC   Nguyen,M., Southwick,A., Karlin-Neumann,G.,  Lam,B., Miranda,M.,
CC   Palm,C.J., Bowser,L., Jones,T., Banh,J., Chen,H., Cheuk,R.,
CC   Chung,M.K., Kim,C., Lin,J., Liu,S.X., Pham,P.K., Sakano,H.,
CC   Shinn,P., Yamada,K., Ecker,J., Theologis,A. and Davis,R.W.
CC   Tripp,M, (SSP/Stanford) and Seki,M. (RIKEN GSC) contributed equally
CC   to this work.  Shinozaki,K. (RIKEN GSC) and Davis,R.W.
CC   (SSP/Stanford)  contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1022
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="2"
FT                   /mol_type="mRNA"
FT                   /clone="U17355"
FT                   /note="This clone is in pENTR/SD-dTopo   This is a cloned
FT                   PCR product using RIKEN clone RAFL11-09-D20 (AY072357) as a
FT                   template ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..846
FT                   /codon_start=1
FT                   /gene="At2g43610"
FT                   /product="putative endochitinase"
FT                   /db_xref="GOA:O22842"
FT                   /db_xref="HSSP:1CNS"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="UniProtKB/TrEMBL:O22842"
FT                   /protein_id="AAM48043.1"
FT                   /translation="MATQNAILKKALIIFLFTLTIMTGTAFSQNCGTNGCKGNMCCSRW
FT                   GYCGTTKAYCGTGCQSGPCNSKPKPTPTPSGSGGLNAGPRGTIASVITPAFFNSIMSKV
FT                   GSGCPAKGFYTRQAFIAAAESFAAYKGTVAKREIAAMLAQFSHESGSFCYKEEIARGRY
FT                   CSPSTTYPCQPGKNYYGRGPIQITWNYNYGAAGKFLGLPLLKDPDMVARSPTVAFQCAM
FT                   WFWNKNVRPVLSQGFGATTRRINGGECNGGRPAAVQSRVNHYLDFCKKLGVTPGTNLSC
FT                   "
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SQ   Sequence 1022 BP; 276 A; 221 C; 253 G; 272 T; 0 other;
     atggcgacac aaaatgcgat tctgaaaaaa gctctcatca ttttcctctt tactctaacc        60
     atcatgacag gaaccgcgtt ttcacaaaac tgtggtacaa acgggtgtaa aggcaacatg       120
     tgctgcagca ggtggggata ttgtggtacc acaaaagcct actgtggcac tgggtgccag       180
     agtggacctt gcaactctaa acctaaacct actccgactc caagcggtag tggcggtcta       240
     aatgctggtc ctcgtggtac catagcaagc gttatcacac cagcgttctt caacagcatc       300
     atgagtaaag tcggaagcgg ttgcccagcg aaagggtttt acactcgcca ggctttcatc       360
     gcagccgctg aatcgttcgc agcctacaaa ggaactgttg ctaagcgtga gattgccgcc       420
     atgttggctc agttctctca cgaatctgga agtttttgtt acaaagaaga aatagccaga       480
     ggaaggtact gctcaccaag cacaacatat ccttgtcaac ccggaaagaa ctactatggt       540
     cgcggtccga tccaaatcac atggaactac aactatggtg cagccggaaa gttccttgga       600
     cttcctctct tgaaggaccc agatatggtg gctcgtagcc caactgtggc tttccagtgt       660
     gccatgtggt tttggaacaa gaatgtgcgt ccggttttga gccaagggtt tggtgcaacc       720
     acgaggagga tcaacggtgg tgaatgtaat ggtgggcgtc cagctgcagt gcagagcagg       780
     gttaaccatt acttggactt ctgcaagaag cttggggtca ctcctggaac caatctctca       840
     tgttgaagac actactagtt tatgagggtt tttcattaat gtcgtctggt taagaatttc       900
     gtatcgaata ataaagtgaa gtcgaaaata ctagaactta taaaatttgt aagagattag       960
     aagttatatt gtgtggttga tgtctcttaa ggtaactata ttgtgtgttg tttgtatccg      1020
     ct                                                                     1022
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