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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY114020; SV 1; linear; mRNA; STD; PLN; 1345 BP.
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AC   AY114020;
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DT   05-JUN-2002 (Rel. 72, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 3)
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DE   Arabidopsis thaliana putative alpha-galactosidase (At3g56310) mRNA,
DE   complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1345
RA   Yamada K., Banh J., Chan M.M., Chang C.H., Chang E., Dale J.M., Deng J.M.,
RA   Goldsmith A.D., Lee J.M., Onodera C.S., Quach H.L., Tang C., Toriumi M.,
RA   Wu H.C., Yamamura Y., Yu G., Bowser L., Carninci P., Chen H., Cheuk R.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Kim C., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M.,
RA   Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., Southwick A.,
RA   Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   "Arabidopsis Open Reading Frame (ORF) Clones";
RL   Unpublished.
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RN   [2]
RP   1-1345
RA   Yamada K., Banh J., Chan M.M., Chang C.H., Chang E., Dale J.M., Deng J.M.,
RA   Goldsmith A.D., Lee J.M., Onodera C.S., Quach H.L., Tang C.C., Toriumi M.,
RA   Wu H.C., Yamamura Y., Yu G., Bowser L., Carninci P., Chen H., Cheuk R.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Kim C., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M.,
RA   Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., Southwick A.,
RA   Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   ;
RL   Submitted (16-MAY-2002) to the EMBL/GenBank/DDBJ databases.
RL   Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA
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CC   The RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length  cDNA'): Seki,M., Narusaka,M.,  Ishida,J.,
CC    Satou,M.,  Kamiya,A., Sakurai,T., Carninci,P.,  Kawai, J.,
CC   Hayashizaki,Y.  and  Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Yamada,K.,
CC   Banh,J., Chan,M.M., Chang,C.H., Chang,E., Dale,J.M., Deng,J.M.,
CC   Goldsmith,A.D., Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C.,
CC   Toriumi,M., Wu,H.C., Yamamura,Y., Yu,G., Bowser,L., Chen,H.,
CC   Cheuk,R., Jones,T., Karlin-Neumann,G., Kim,C., Lam,B., Lin,J.,
CC   Miranda,M., Nguyen,M., Palm,C.J., Shinn,P., Southwick,A.,
CC   Davis,R.W., Ecker,J.R. and Theologis,A.
CC   Yamada,K. (SSP/PGEC) and Seki, M. (RIKEN GSC) contributed equally
CC   to this work.  Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP
CC   /PGEC) contributed equally to this work as PIs.
CC   Annotation is based on the January 2002 version of the Arabidopsis
CC   genome submitted to GenBank.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1345
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="3"
FT                   /mol_type="mRNA"
FT                   /clone="U10314"
FT                   /note="This clone is in pUNI 51. ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1314
FT                   /codon_start=1
FT                   /gene="At3g56310"
FT                   /product="putative alpha-galactosidase"
FT                   /db_xref="GOA:Q8VXZ7"
FT                   /db_xref="HSSP:1UAS"
FT                   /db_xref="InterPro:IPR013785"
FT                   /db_xref="UniProtKB/TrEMBL:Q8VXZ7"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="AAM45068.1"
FT                   /translation="MVIMKKMKDSVLFLVVGLFSLSVLVSQSIAGRVKAPLLQSNTGGL
FT                   VFSKSFNSIYDTSMYGRLQLNNGLARTPQMGWNSWNFFACNINETVIKETADALVSSGL
FT                   ADLGYIHVNIDDCWSNLLRDSEGQLVPHPETFPSGIKLLADYVHSKGLKLGIYSDAGVF
FT                   TCEVHPGSLFHEVDDADIFASWGVDYLKYDNCFNLGIKPIERYPPMRDALNATGRSIFY
FT                   SLCEWGVDDPALWAKEVGNSWRTTDDINDTWASMTTIADLNNKWAAYAGPGGWNDPDML
FT                   EIGNGGMTYEEYRGHFSIWALMKAPLLIGCDVRNMTAETLEILSNKEIIAVNQDPLGVQ
FT                   GRKIQANGENDCQQVWSGPLSGDRMVVALWNRCSEPATITASWDMIGLESTISVSVRDL
FT                   WQHKDVTENTSGSFEAQVDAHDCHMYVLTPQTVSHSDV"
FT   3'UTR           1315..1345
FT                   /gene="At3g56310"
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SQ   Sequence 1345 BP; 361 A; 260 C; 319 G; 405 T; 0 other;
     atggtgatta tgaagaagat gaaagattca gtcttgttcc tcgtcgtagg cctcttctct        60
     ttatctgttt tggtctctca gtcgatcgca gggagagtca aagctccatt gttgcagagc       120
     aatactggtg gattagtttt cagcaaatcc ttcaattcga tctatgatac ttctatgtac       180
     ggacgcttgc agctcaacaa tggccttgct cgaactccac aaatgggatg gaatagctgg       240
     aatttctttg cttgcaatat caatgaaact gtcataaagg aaactgctga tgctttggtt       300
     tcatctggcc tggctgattt aggatacata catgtcaata ttgatgattg ctggtccaat       360
     ttgttacgcg attcagaggg tcaattggtt cctcatcctg aaaccttccc atcaggaatt       420
     aagcttcttg ctgattatgt tcattcaaag ggtctcaaac tcggtatata ttctgatgct       480
     ggcgttttca cttgtgaagt tcatccggga tcccttttcc atgaagtgga tgatgcagac       540
     atttttgctt cttggggcgt ggattatctg aaatatgaca attgtttcaa cctgggaata       600
     aaaccaatcg aaagataccc tccaatgcgt gatgctctaa acgcaactgg ccgctcaatc       660
     ttctattcac tatgtgaatg gggcgttgat gatcctgcct tgtgggcaaa agaagttgga       720
     aacagttggc gcacaaccga tgacatcaac gatacatggg caagtatgac tacaattgct       780
     gatttgaata acaagtgggc tgcatatgct ggacctggtg gttggaatga tccggatatg       840
     ttggaaatag ggaatggagg gatgacatac gaggagtatc gaggtcattt tagcatttgg       900
     gctttgatga aggcacctct cttgattggt tgtgatgtaa gaaacatgac cgctgaaact       960
     ttggagattt tgagtaataa ggagattatc gctgttaacc aagacccact tggtgttcaa      1020
     ggaaggaaaa ttcaagccaa tggagaaaat gattgtcagc aggtgtggtc aggaccttta      1080
     tctggtgacc gtatggtagt tgctctctgg aaccgttgct ctgagccagc aactattaca      1140
     gcatcatggg atatgatcgg tcttgaatct accattagcg tttcagtaag agatttgtgg      1200
     cagcacaaag atgtaacaga gaatacttct ggctcctttg aagctcaagt tgacgcacac      1260
     gactgtcata tgtacgttct cactccccag acagtatcac actctgatgt atagttcttt      1320
     attgtgaggc attcaaatcc caaag                                            1345
//
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