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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY113959; SV 1; linear; mRNA; STD; PLN; 1309 BP.
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AC   AY113959;
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DT   05-JUN-2002 (Rel. 72, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 3)
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DE   Arabidopsis thaliana unknown protein (At4g38040) mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1309
RA   Yamada K., Banh J., Chan M.M., Chang C.H., Chang E., Dale J.M., Deng J.M.,
RA   Goldsmith A.D., Lee J.M., Onodera C.S., Quach H.L., Tang C., Toriumi M.,
RA   Wu H.C., Yamamura Y., Yu G., Bowser L., Carninci P., Chen H., Cheuk R.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Kim C., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M.,
RA   Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., Southwick A.,
RA   Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   "Arabidopsis Open Reading Frame (ORF) Clones";
RL   Unpublished.
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RN   [2]
RP   1-1309
RA   Yamada K., Banh J., Chan M.M., Chang C.H., Chang E., Dale J.M., Deng J.M.,
RA   Goldsmith A.D., Lee J.M., Onodera C.S., Quach H.L., Tang C.C., Toriumi M.,
RA   Wu H.C., Yamamura Y., Yu G., Bowser L., Carninci P., Chen H., Cheuk R.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Kim C., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M.,
RA   Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., Southwick A.,
RA   Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   ;
RL   Submitted (16-MAY-2002) to the EMBL/GenBank/DDBJ databases.
RL   Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA
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CC   The RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length  cDNA'): Seki,M., Narusaka,M.,  Ishida,J.,
CC    Satou,M.,  Kamiya,A., Sakurai,T., Carninci,P.,  Kawai, J.,
CC   Hayashizaki,Y.  and  Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Yamada,K.,
CC   Banh,J., Chan,M.M., Chang,C.H., Chang,E., Dale,J.M., Deng,J.M.,
CC   Goldsmith,A.D., Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C.,
CC   Toriumi,M., Wu,H.C., Yamamura,Y., Yu,G., Bowser,L., Chen,H.,
CC   Cheuk,R., Jones,T., Karlin-Neumann,G., Kim,C., Lam,B., Lin,J.,
CC   Miranda,M., Nguyen,M., Palm,C.J., Shinn,P., Southwick,A.,
CC   Davis,R.W., Ecker,J.R. and Theologis,A.
CC   Yamada,K. (SSP/PGEC) and Seki, M. (RIKEN GSC) contributed equally
CC   to this work.  Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP
CC   /PGEC) contributed equally to this work as PIs.
CC   Annotation is based on the January 2002 version of the Arabidopsis
CC   genome submitted to GenBank.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1309
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="4"
FT                   /mol_type="mRNA"
FT                   /clone="U10875"
FT                   /note="This clone is in pUNI 51. ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1278
FT                   /codon_start=1
FT                   /gene="At4g38040"
FT                   /product="unknown protein"
FT                   /db_xref="GOA:Q9SZK4"
FT                   /db_xref="InterPro:IPR004263"
FT                   /db_xref="UniProtKB/TrEMBL:Q9SZK4"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="AAM45007.1"
FT                   /translation="MTIVKPSQFSFSGGGSSPLCSLKSSLLTVAILTFISLFYLSLNSL
FT                   RTSPPSPVIVVTPIHVPHTFVNEYKTDNETPTMEEETYSDVYHSPEAFRLNYAEMEKRF
FT                   KVYIYPDGDPNTFYQTPRKVTGKYASEGYFFQNIRESRFRTLDPDEADLFFIPISCHKM
FT                   RGKGTSYENMTVIVQNYVDGLIAKYPYWNRTLGADHFFVTCHDVGVRAFEGSPLLIKNT
FT                   IRVVCSPSYNVGFIPHKDVALPQVLQPFALPAGGNDVENRTTLGFWAGHRNSKIRVILA
FT                   HVWENDTELDISNNRINRATGHLVYQKRFYRTKFCICPGGSQVNSARITDSIHYGCIPV
FT                   ILSDYYDLPFNDILNWRKFAVVLREQDVYNLKQILKNIPHSEFVSLHNNLVKVQKHFQW
FT                   NSPPVKFDAFHMIMYELWLRHHVVKY"
FT   misc_difference 276
FT                   /gene="At4g38040"
FT                   /replace="t"
FT                   /note="compared to genomic sequence"
FT   3'UTR           1279..1309
FT                   /gene="At4g38040"
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SQ   Sequence 1309 BP; 352 A; 298 C; 263 G; 396 T; 0 other;
     atgacgatcg ttaaaccgtc gcagttctca ttctccggcg gcggatcttc gccgttatgt        60
     tcactcaaaa gctcactcct caccgtcgct attctcactt tcatttccct cttctacctc       120
     tctctcaatt ccttacgcac ttcgccgccg tctcctgtca tcgtggtaac accgattcat       180
     gttcctcata ccttcgtgaa tgagtataag actgataacg aaacaccgac gatggaagaa       240
     gaaacctact ccgatgttta tcactcaccg gaggcattcc gattgaatta cgccgagatg       300
     gagaagagat tcaaggttta tatttatccc gacggcgatc caaatacgtt ttatcaaacg       360
     ccgaggaaag tcaccggtaa atacgctagt gaggggtact tcttccagaa cattagagag       420
     agtcgatttc gaaccctaga tccagatgaa gcagatctct tcttcattcc aatctcttgt       480
     cacaagatgc gaggcaaagg aacatcatat gaaaatatga ctgtgattgt tcaaaactat       540
     gttgatggat tgatagctaa gtatccttat tggaatagaa ctttaggagc agatcacttc       600
     tttgttacat gtcatgatgt tggtgttaga gcatttgagg gatctccgct tctgattaag       660
     aatactatta gggttgtgtg ctcacctagc tacaatgttg gtttcattcc tcacaaagat       720
     gttgctttgc ctcaagttct tcagccattt gctctccctg ctggtggaaa tgatgttgag       780
     aatcggacga ctcttggttt ttgggctggt catcgaaatt ctaagatacg ggttatactt       840
     gctcatgtgt gggaaaacga cacagagctt gatatttcaa acaacagaat taacagagct       900
     acagggcatt tggtgtatca gaagagattc taccggacta aattctgcat atgccctggt       960
     ggttctcaag taaacagcgc tcgcataacg gactcgatcc attacggatg tattcctgtc      1020
     atattatcag actactacga cctccctttc aacgacatcc tgaattggcg aaaatttgcg      1080
     gttgtactca gagagcaaga tgtctataac cttaagcaga tcctcaagaa catacctcac      1140
     tcagagtttg tttcgttgca taacaacttg gtcaaggtgc agaagcattt tcaatggaac      1200
     tcacctccag tcaaattcga cgcatttcac atgatcatgt atgaactatg gttacgccac      1260
     catgtcgtca agtactgatc caagactttt tttttttgtt ttttttcct                  1309
//
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