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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY099829; SV 1; linear; mRNA; STD; PLN; 1717 BP.
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AC   AY099829;
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DT   07-MAY-2002 (Rel. 71, Created)
DT   07-MAY-2002 (Rel. 71, Last updated, Version 1)
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DE   Arabidopsis thaliana unknown protein (At3g27540) mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1717
RA   Nguyen M., Karlin-Neumann G., Southwick A., Lam B., Miranda M., Palm C.J.,
RA   Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R., Chung M.K.,
RA   Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C., Lin J., Liu S.X.,
RA   Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RT   ;
RL   Submitted (24-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
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CC   e-mail for correspondence: arab@sequence.stanford.edu
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Nguyen,M.,
CC   Southwick,A., Karlin-Neumann,G.,  Lam,B., Miranda,M., Palm,C.J.,
CC   Bowser,L., Jones,T., Banh,J., Chen,H., Cheuk,R., Chung,M.K.,
CC   Kim,C., Lin,J., Liu,S.X., Pham,P.K., Sakano,H., Shinn,P.,
CC   Yamada,K., Ecker,J., Theologis,A. and Davis,R.W.
CC   Nguyen,M, (SSP/Stanford) and Seki,M. (RIKEN GSC) contributed
CC   equally to this work.  Shinozaki,K. (RIKEN GSC) and Davis,R.W.
CC   (SSP/Stanford)  contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1717
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="3"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL09-95-K08 (R25363)"
FT                   /note="This clone is in pBluescript ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             127..1299
FT                   /codon_start=1
FT                   /gene="At3g27540"
FT                   /product="unknown protein"
FT                   /db_xref="GOA:Q9LT58"
FT                   /db_xref="InterPro:IPR006813"
FT                   /db_xref="UniProtKB/TrEMBL:Q9LT58"
FT                   /protein_id="AAM20680.1"
FT                   /translation="MSDGYINSKKTDDICEDVCGQGSKAAKTISRLKCVLKGFDLRTYL
FT                   FLFVLMPFGILAIYLHGQKFTYFFRPLWESPPKPFQTIPHYYNENVTMESLCSLHGWGI
FT                   RDSPRRVFDAVLFSNEKDLLTVRWNELYPYVTQFVILESNSTFTGLPKPLVFKSNKDQF
FT                   KFVEPRLTYGTIGGRFRKGENPFVEEAYQRVALDQLLRIAGIQEDDLLIMSDVDEIPSA
FT                   HTINLLRWCDDIPPVLHLQLKNYLYSFEYYVDSKSWRASIHRYSPGKTRYAHFRQSNVM
FT                   LADSGWHCSFCFRYISEFIFKMKAYSHSDRVRFSHYLNPRRIQDVICKGTDLFDMLPEE
FT                   YTFKEIIGKMGPVPRSYSAVHLPSYLLYNAEQYKYLLPGNCIREKQTGFI"
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SQ   Sequence 1717 BP; 464 A; 280 C; 368 G; 605 T; 0 other;
     acagattcgt aacgagttct tcattttcat atatctccgt ttctgggttt tttttttccc        60
     tttcaagttt caattttttc ttctgggttt ttaatttggt gatcaaacgt ttgcattaga       120
     cgaatcatgt ccgatggata catcaattcg aagaagactg atgatatttg cgaagatgtt       180
     tgtggacagg gatcaaaagc agcaaaaaca atctcaaggc taaaatgtgt gcttaaaggt       240
     tttgatttaa gaacatactt gttcctcttt gtgttgatgc catttggtat cttagcaatt       300
     tatctacacg gccaaaagtt cacttatttc tttagacctc tttgggaatc acctccgaag       360
     ccatttcaaa ccattcctca ttactataat gagaatgtta ctatggaatc tctctgtagt       420
     cttcatggtt ggggaattag agactcgccc agacgggttt tcgacgcggt tttgtttagt       480
     aatgagaaag atcttttaac tgttagatgg aatgagcttt atccttacgt gacacagttt       540
     gtgattcttg aatctaattc tacgtttact ggtttgccta aaccattggt gtttaagagt       600
     aataaggatc agtttaagtt tgtggagccg cggctaactt atgggacgat tggtggacgg       660
     tttaggaaag gcgagaatcc gtttgtcgaa gaagcgtatc agcgagttgc gttggatcag       720
     ttgcttagga ttgctggtat tcaagaagat gatttgttga taatgtctga tgttgatgag       780
     attcctagtg ctcatactat caatcttttg agatggtgtg atgatattcc tccagttctt       840
     caccttcagt tgaagaatta tttgtattct ttcgaatact atgtcgatag caagagctgg       900
     agagcgtcta tacaccgtta cagtccaggg aaaacgcggt atgctcattt ccgtcagagt       960
     aatgttatgt tagctgattc tggatggcat tgtagcttct gtttccgtta tataagtgag      1020
     tttatattca agatgaaagc ttatagtcat tcagaccgtg tcagattctc tcattacctg      1080
     aatccaagga ggattcaaga tgttatttgc aaaggaactg atttgtttga tatgttacct      1140
     gaagaataca cattcaagga gattataggc aaaatgggac ctgtacctcg gtcttattca      1200
     gcggttcatc ttccttcgta cctactgtat aacgccgagc agtacaaata cttgttgcct      1260
     ggtaattgca taagagaaaa acagacaggg tttatatgat gattgctttt aaagtgttct      1320
     tgtatagttc taagcttcag ggcctttgca tcattcttga gataaaaaga gcaaaatttt      1380
     gcgcgaaaga gaggatattg aagaacgtag ccaagaagcg tatataaccc gattgctgga      1440
     tatttttgcg atacaggagg gtttgtgaga acaaaaagag cttactatga gttagagcag      1500
     cacaacaatt ctcaggtttt tttaacaatg ggaaaaaatg ttgttgccta aggctgattt      1560
     ggtagtatag atgtttcagt atccatttgt ttatataaca attttcttcg cggttcgttg      1620
     ttctgagttt agttctggtt atacagttgc ttgattattc ttattctgtt tccatttatc      1680
     tattaaagcc ttctttgctc tgatcatttt tgactca                               1717
//
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