spacer
spacer
EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY099810; SV 2; linear; mRNA; STD; PLN; 994 BP.
XX
AC   AY099810;
XX
DT   07-MAY-2002 (Rel. 71, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Arabidopsis thaliana endochitinase isolog (At2g43570) mRNA, complete cds.
XX
KW   FLI_CDNA.
XX
OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-994
RA   Nguyen M., Karlin-Neumann G., Southwick A., Lam B., Miranda M., Palm C.J.,
RA   Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R., Chung M.K.,
RA   Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C., Lin J., Liu S.X.,
RA   Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RT   ;
RL   Submitted (24-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
XX
RN   [2]
RP   1-994
RA   Palm C.J., Davis R.W.;
RT   ;
RL   Submitted (01-OCT-2002) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
XX
CC   On Oct 1, 2002 this sequence version replaced gi:20466687.
CC   e-mail for correspondence: arab@sequence.stanford.edu
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Nguyen,M.,
CC   Southwick,A., Karlin-Neumann,G.,  Lam,B., Miranda,M., Palm,C.J.,
CC   Bowser,L., Jones,T., Banh,J., Chen,H., Cheuk,R., Chung,M.K.,
CC   Kim,C., Lin,J., Liu,S.X., Pham,P.K., Sakano,H., Shinn,P.,
CC   Yamada,K., Ecker,J., Theologis,A. and Davis,R.W.
CC   Nguyen,M, (SSP/Stanford) and Seki,M. (RIKEN GSC) contributed
CC   equally to this work.  Shinozaki,K. (RIKEN GSC) and Davis,R.W.
CC   (SSP/Stanford)  contributed equally to this work as PIs.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..994
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="2"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL09-95-D04 (R25566)"
FT                   /note="This clone is in pBluescript ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             30..863
FT                   /codon_start=1
FT                   /gene="At2g43570"
FT                   /product="endochitinase isolog"
FT                   /db_xref="GOA:O24603"
FT                   /db_xref="HSSP:2BAA"
FT                   /db_xref="InterPro:IPR000726"
FT                   /db_xref="InterPro:IPR001002"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:O24603"
FT                   /protein_id="AAM20661.1"
FT                   /translation="MAKPTSRNDRFALFFITLIFLILTVSKPVASQNCGCASDFCCSKY
FT                   GYCGTTDEFCGEGCQAGPCRSSGGGGDPAVSLEGTVTPDFFNSILNQRGDCPGKGFYTH
FT                   DTFMAAANSYPSFGASISKREIAAFFAHVAQETGFMCYIEEIDGPAKAASGEYCDTEKP
FT                   EFPCAQGKGYYGRGAIQLSWNYNYGLCGKALDENLLASPEKVAQDQVLAFKTAFWFWTT
FT                   NVRTSFKSGFGATIRAVNSRECSGGDSTAKAANRIKYFQDYCGKLGVAPGDNLTC"
XX
SQ   Sequence 994 BP; 278 A; 239 C; 226 G; 251 T; 0 other;
     tggcggtctg catcacagac acaaaaacaa tggctaaacc cacatcacga aatgaccgat        60
     ttgccctttt cttcataacc ctaattttcc tgatcctaac cgtttccaaa ccggtcgcct       120
     ctcaaaactg tggctgcgcc tctgacttct gttgcagcaa atatggctac tgtggtacga       180
     ccgatgagtt ctgcggcgag ggctgccagg caggaccttg ccggagcagt ggaggcggtg       240
     gagatcctgc tgtttcacta gaaggaacgg tgacacctga cttctttaac tctatactaa       300
     accaaagagg tgattgtcct ggcaaaggat tctacactca cgacaccttc atggccgcag       360
     ctaattctta ccctagcttc ggtgcttcca tctccaaacg cgaaatcgcg gcgtttttcg       420
     ctcacgtagc ccaagaaaca gggttcatgt gttacattga ggaaattgat ggaccagcca       480
     aggccgcatc cggagagtac tgcgacacag agaaaccaga gttcccatgt gcacaaggaa       540
     agggctacta tggccgtggt gcaatccagc tctcttggaa ctacaactac ggtctctgtg       600
     gcaaagcctt ggacgagaac ttattggctt caccagagaa agttgctcaa gaccaggttc       660
     ttgccttcaa gaccgctttc tggttctgga ccactaatgt tcgcacgagt tttaaatcgg       720
     gctttggcgc aacaatcagg gcagtgaata gtagggagtg tagcggagga gattctacag       780
     ccaaagccgc caacaggatt aagtatttcc aagactattg tggcaagctt ggagttgcac       840
     ctggagataa cctcacttgt taaagtttcc ttgctatcca tccgaaacac aactagtgtt       900
     tgaaaaactt agagatcaca taagagaaag tatcatatta gtataataat gttgtaatac       960
     ttcacatttt accaaaaata ataataataa tgtt                                   994
//
spacer
spacer