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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY099734; SV 1; linear; mRNA; STD; PLN; 1780 BP.
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AC   AY099734;
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DT   07-MAY-2002 (Rel. 71, Created)
DT   07-MAY-2002 (Rel. 71, Last updated, Version 1)
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DE   Arabidopsis thaliana putative glucan synthase (At3g07160) mRNA, complete
DE   cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1780
RA   Nguyen M., Karlin-Neumann G., Southwick A., Lam B., Miranda M., Palm C.J.,
RA   Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R., Chung M.K.,
RA   Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C., Lin J., Liu S.X.,
RA   Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RT   ;
RL   Submitted (24-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
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CC   e-mail for correspondence: arab@sequence.stanford.edu
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Nguyen,M.,
CC   Southwick,A., Karlin-Neumann,G.,  Lam,B., Miranda,M., Palm,C.J.,
CC   Bowser,L., Jones,T., Banh,J., Chen,H., Cheuk,R., Chung,M.K.,
CC   Kim,C., Lin,J., Liu,S.X., Pham,P.K., Sakano,H., Shinn,P.,
CC   Yamada,K., Ecker,J., Theologis,A. and Davis,R.W.
CC   Nguyen,M, (SSP/Stanford) and Seki,M. (RIKEN GSC) contributed
CC   equally to this work.  Shinozaki,K. (RIKEN GSC) and Davis,R.W.
CC   (SSP/Stanford)  contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1780
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="3"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL09-84-B14 (R25187)"
FT                   /note="This clone is in pBluescript ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             272..1582
FT                   /codon_start=1
FT                   /gene="At3g07160"
FT                   /product="putative glucan synthase"
FT                   /db_xref="GOA:Q8LPI6"
FT                   /db_xref="InterPro:IPR003440"
FT                   /db_xref="UniProtKB/TrEMBL:Q8LPI6"
FT                   /protein_id="AAM20585.1"
FT                   /translation="MMSFFFTTVGFYLCTMLTVLTVYIFLYGRAYLALSGVGATIRERA
FT                   ILLDDTALSAALNAQFLFQIGVFTAVPMVLGFILEQGFLQAIVSFITMQFQLCTVFFTF
FT                   SLGTRTHYFGRTILHGGARYQATGRGFVVKHIKFSENYRLYSRSHFVKAMEVILLLVVY
FT                   LAYGNDEAGAVSYILLTVSSWFLAVSWLFAPYLFNPAGFEWQKVVEDFKEWTNWLFYRG
FT                   GIGVKGAESWEAWWEEELSHIRTLSGRIMETILSLRFFIFQYGIVYKLKLQGSDTSFAV
FT                   YGWSWVAFAMIIVLFKVFTFSQKISVNFQLLLRFIQGLSLLMALAGIIVAVVLTPLSVT
FT                   DIFACVLAFIPTGWGILSIACAWKPVLKRMGMWKSIRSLARLYDALMGMLIFLPVALCS
FT                   WFPFVSTFQTRMMFNQAFSRGLEISLILAGDNPNSGL"
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SQ   Sequence 1780 BP; 428 A; 338 C; 414 G; 600 T; 0 other;
     agatgtcttt gacagagtat ttcatattac acgtggtggt atcagcaagg cctctcgggt        60
     catcaatatt agtgaagata tatttgctgg tttcaacaca actctacgtc aagggaatgt       120
     tactcatcat gagtatattc aggtgggcaa agggcgagat gttgggctca atcaaatagc       180
     tctgtttgaa gggaaggttg ctggtgggaa tggtgaacag gttcttagtc gagatgtata       240
     cagacttggc cagctccttg atttcttccg tatgatgtca ttcttcttta caaccgttgg       300
     cttctatcta tgtacaatgt tgacggtgct tactgtgtat attttcttat atgggagggc       360
     atatctggca ctttctggag ttggagctac tattcgagaa agagctattc ttctggacga       420
     tactgcactt agcgccgcct tgaatgctca gtttctgttt cagattggtg tcttcactgc       480
     tgtgccaatg gttttgggat ttattttgga acagggtttt ctccaggcca tcgtcagttt       540
     cataacaatg caatttcagc tatgtactgt cttcttcaca ttttcccttg gtacaagaac       600
     ccattatttt ggacggacaa ttctccatgg tggtgcaagg taccaagcca ctggaagagg       660
     cttcgtcgtg aagcatatca aattttctga aaactaccgt ctttattcca gaagtcattt       720
     tgtcaaagca atggaagtta ttcttttatt ggttgtgtac cttgcgtatg gcaatgatga       780
     agctggtgcg gtttcctaca tcctgctgac agttagcagc tggtttttgg ctgtttcttg       840
     gctgtttgct ccgtacctat tcaaccctgc cggatttgag tggcagaaag tcgtggagga       900
     cttcaaagaa tggacaaatt ggctctttta cagaggtgga attggtgtga aaggagctga       960
     aagctgggaa gcatggtggg aagaagaact gtctcacatt cggaccttga gcgggaggat      1020
     aatggagact attttaagtc tacgattctt tatcttccag tatggtattg tctacaaact      1080
     gaagctacaa ggatcagata catcatttgc ggtgtacggt tggtcatggg ttgcatttgc      1140
     aatgattata gttcttttca aggtctttac cttcagccag aagatttctg tcaatttcca      1200
     gcttttactg aggtttatac aaggtctatc cttattgatg gctctagctg gcataatcgt      1260
     agcagttgtg ctcacaccct tgtcagtgac agacatattt gcatgcgtat tggcttttat      1320
     accgacagga tggggaattc tttctattgc gtgtgcttgg aagccagtcc taaagcgaat      1380
     ggggatgtgg aaatcgattc gttccctagc aaggctatat gatgcgttaa tgggaatgct      1440
     catatttctt cccgttgctc tctgctcctg gttccctttt gtgtcgacct tccagacacg      1500
     tatgatgttt aaccaagcct tcagccgcgg tctcgagatc tctcttattc ttgcaggaga      1560
     caatcccaat tctggtcttt aaacttttgg aagctgttat gtttatgttt ttcatacatt      1620
     tatttgtgtt tagttttccg agtgtagcag tagtaaatga tgggagcctc tctgtagctt      1680
     taggcatttt aagacttctg taacatttgt ccccaaaaaa gaaaagactt ttgtaaaaca      1740
     taacctagaa tctttaagat attacgtaga aatgcctttc                            1780
//
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