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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY099540; SV 1; linear; mRNA; STD; PLN; 1758 BP.
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AC   AY099540;
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DT   07-MAY-2002 (Rel. 71, Created)
DT   07-MAY-2002 (Rel. 71, Last updated, Version 1)
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DE   Arabidopsis thaliana putative protein (At5g02410) mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1758
RA   Nguyen M., Karlin-Neumann G., Southwick A., Lam B., Miranda M., Palm C.J.,
RA   Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R., Chung M.K.,
RA   Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C., Lin J., Liu S.X.,
RA   Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RT   ;
RL   Submitted (24-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
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CC   e-mail for correspondence: arab@sequence.stanford.edu
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Nguyen,M.,
CC   Southwick,A., Karlin-Neumann,G.,  Lam,B., Miranda,M., Palm,C.J.,
CC   Bowser,L., Jones,T., Banh,J., Chen,H., Cheuk,R., Chung,M.K.,
CC   Kim,C., Lin,J., Liu,S.X., Pham,P.K., Sakano,H., Shinn,P.,
CC   Yamada,K., Ecker,J., Theologis,A. and Davis,R.W.
CC   Nguyen,M, (SSP/Stanford) and Seki,M. (RIKEN GSC) contributed
CC   equally to this work.  Shinozaki,K. (RIKEN GSC) and Davis,R.W.
CC   (SSP/Stanford)  contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1758
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL09-42-D24 (R24268)"
FT                   /note="This clone is in pBluescript ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             123..1652
FT                   /codon_start=1
FT                   /gene="At5g02410"
FT                   /product="putative protein"
FT                   /db_xref="GOA:Q8L638"
FT                   /db_xref="InterPro:IPR007006"
FT                   /db_xref="InterPro:IPR016900"
FT                   /db_xref="UniProtKB/TrEMBL:Q8L638"
FT                   /protein_id="AAM20392.1"
FT                   /translation="MGKLAVAAITSLWVIPMSIIVNHIVPEPYMDEIFHVPQAQQYCNG
FT                   NFRSWDPMITTPPGLYYLSLAHVASLFPGMLLMENTSQSFSEACSTSVLRSTNAVSAVL
FT                   CGVLVYEIIRFLGPNLSDRKATFMALVMSLYPLHWFFTFLYYTDVASLTAVLAMYLTCL
FT                   KRRYVLSALFGTLAVFIRQTNVVWMLFVACSGILDFTLDSSKQKGKQEVNQELHQSSNK
FT                   KGATLRSNLRKRKSDISSDTSDPFNHGQTVPSTEDTSDLVYDIYTVISTSWNLKWRILI
FT                   KFSPFIFVVVAFGIFILWNGGIVLGAKEAHVVSLHFAQIMYFSLVSALFTAPLHFSVNQ
FT                   LRHQFHQLHRNWSLSLILTLVALVAGFVSVHFFSLAHPYLLADNRHYPFYLWRKIINAH
FT                   WLMKYILVPVYVYSWFSILTLLAKTRRQTWILVYFLATCGVLVPTPLIEFRYYTIPFYL
FT                   FMLHSCVRSSSFATWLLIGTIFVSINVFTMAMFLFRPFKWSHEDGVQRFIW"
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SQ   Sequence 1758 BP; 446 A; 355 C; 356 G; 601 T; 0 other;
     aattttccgg gaaaatccga tttccgttgt gaattattcg tcaggcaacg aaaacccatg        60
     attgatccgc gaatgtgatt cggatccgat tggttccttt tgtgggaaat tagagggaaa       120
     aaatggggaa attagccgtt gcagcgatca cgagcttgtg ggtgattccg atgtcgatta       180
     tcgtcaatca cattgttcct gaaccctaca tggacgagat atttcatgtg cctcaagctc       240
     agcaatactg caatgggaat tttaggagct gggatccaat gatcactacc ccacctggat       300
     tgtactatct ttcactagca catgttgcta gtttgtttcc aggaatgttg ttgatggaaa       360
     atacatctca gtccttttca gaagcttgtt cgacatctgt cctgcggtct acaaatgctg       420
     tttctgcagt attgtgtggt gttttagtgt atgagataat aagattcttg gggccgaatc       480
     ttagtgatag aaaagcgact tttatggcgt tagtcatgtc gctttaccct ctccattggt       540
     tcttcacttt cctatactat acagatgttg cgtccctaac cgcagttctt gccatgtacc       600
     ttacttgttt gaaaagacga tatgtgctca gtgcattgtt tggcacttta gcagttttta       660
     tccgacaaac aaatgtagtc tggatgcttt tcgttgcttg ctcaggtatt ctagacttca       720
     cccttgactc gtctaagcaa aaaggaaaac aagaagtaaa tcaagaactg catcagtcta       780
     gtaataagaa aggagcaact ttgagatcaa atcttagaaa aagaaaatct gatatcagct       840
     cagacacttc agaccctttt aaccacggtc aaactgttcc ttcaacagag gatacttcag       900
     acttagtgta tgatatttat actgtaatct caacatcttg gaatctgaag tggaggattt       960
     tgatcaagtt tagccctttt atctttgttg tggtggcgtt tggtattttt atcctctgga      1020
     acgggggtat agtcctcggt gcaaaagagg ctcatgtagt ttcactgcat tttgcgcaga      1080
     taatgtattt tagtctcgtt tctgctcttt tcactgctcc cctacacttc tcagtaaatc      1140
     aactgagaca tcagttccat cagctccata gaaattggtc attaagcctt atactaactc      1200
     ttgtggctct agtagccgga tttgtctctg tacacttttt cagcttggct catccatatc      1260
     ttcttgctga taatcgccat tatcctttct acctatggag aaaaattatc aatgcgcatt      1320
     ggttaatgaa gtacatatta gtcccggtat acgtctattc ctggttctca atcctaactt      1380
     tattagcgaa aactcgaagg cagacctgga tattggtcta tttcttagct acatgcggtg      1440
     ttcttgttcc tactccattg atcgagttca gatattacac cattccgttt tacctcttca      1500
     tgcttcactc ctgtgtcaga agcagcagct tcgccacttg gcttctcatc ggaacgattt      1560
     ttgtctctat caatgtgttt acaatggcaa tgttcttgtt tagaccgttt aagtggagcc      1620
     atgaagatgg tgtccagagg tttatatggt agggacaagg tttattatac tctttttgat      1680
     gctattgttt ggttcctcag aaactgttaa gagttcatga tgttttctgt tgttataaaa      1740
     acatacgttt taaggttc                                                    1758
//
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