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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY099539; SV 1; linear; genomic DNA; STD; PLN; 1329 BP.
XX
AC   AY099539;
XX
DT   01-MAY-2003 (Rel. 75, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 3)
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DE   Ipomoea cynanchifolia isolate PI549093 beta-amylase gene, partial cds.
XX
KW   .
XX
OS   Ipomoea cynanchifolia
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons;
OC   asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea.
XX
RN   [1]
RP   1-1329
RX   DOI; 10.1016/S1055-7903(03)00249-5
RX   PUBMED; 15012943.
RA   Rajapakse S., Nilmalgoda S.D., Molnar M., Ballard R.E., Austin D.F.,
RA   Bohac J.R.;
RT   "Phylogenetic relationships of the sweetpotato in Ipomoea series Batatas
RT   (Convolvulaceae) based on nuclear beta-amylase gene sequences";
RL   Mol. Phylogenet. Evol. 30(3):623-632(2004).
XX
RN   [2]
RP   1-1329
RA   Rajapakse S.;
RT   ;
RL   Submitted (24-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   Biological Sciences, Clemson University, 132 Long Hall, Clemson, SC 29634,
RL   USA
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FH   Key             Location/Qualifiers
FH
FT   source          1..1329
FT                   /organism="Ipomoea cynanchifolia"
FT                   /isolate="PI549093"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:129202"
FT   mRNA            join(<1..174,1090..>1329)
FT                   /product="beta-amylase"
FT   CDS             join(<1..174,1090..>1329)
FT                   /codon_start=1
FT                   /product="beta-amylase"
FT                   /db_xref="GOA:Q84LT7"
FT                   /db_xref="HSSP:1FA2"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="UniProtKB/TrEMBL:Q84LT7"
FT                   /protein_id="AAM47023.1"
FT                   /translation="HAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQP
FT                   AEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLNVRPNGVNLNGPPKL
FT                   KMSGLTYLRLSDDLLQTDNFELFKKFVKKMHADL"
XX
SQ   Sequence 1329 BP; 403 A; 255 C; 309 G; 362 T; 0 other;
     catgcggcgg agctcaccgc cggattctac aatgtggcgg gaagagacgg ttatcggcct        60
     attgcgagga tgctggcaag gcaccatgcc actctaaact tcacttgcct tgagatgaga       120
     gactccgaac agcctgccga ggccaagagt gctcctcaag aactcgttca acaggtacca       180
     taaccaaaat tctataatac caaaatgaat aaataaaagt agtcctgaaa ctagcatagt       240
     ggttgctcac tttaccttaa gttatgatcg gaagtggggt tgggtttgat tgtattgtgt       300
     tggtgtaatt tgagtactac taatgtagta aatacaccga gatatatgaa tatgcctaag       360
     tatcgtctag gttcacgtat acaagcttag gtaaacgtga cagtgggccg gatgatccca       420
     aacttatagt aggtttgagt aaaagttcaa aaatcactcc tcaaagcatt taatgcgcct       480
     tatatagagg tgagggagga cacatgtcgg gaactcggca tgctagctag acatgtgttt       540
     cacatgtatt tggagaggtc gggggctatg ctgatacgtc cacatgcaag gagatgcctg       600
     acgagtccta ctgtgatgtg acgagtataa tgtaattagt cacgcttgtc ttttagcata       660
     aaatgttgtc ccatcagaat aactggtatg ggcattaagg tcgggagttc ccgaacacag       720
     gacgaattgt gtaatcgata atcataaaag aatgtgtttg ggtcagatca taaccagatg       780
     gtgtcaaatg tggtcgggaa atgtctttca tgaaatacat aatacatgca tgccgagcag       840
     atatatggtt atatgccaga gggatatctc ctattaacaa cctaacaatc ctaacattga       900
     tttttatcaa aagcatagtg caatattaat attaacaaga atgatactac gtataagata       960
     gggataatcc agtgaagttg atcaaactat tcgcttaagt tccctatgta caatctagct      1020
     ggtttatttc tggcgatctt ttagttactt ccaacatgct aattaaagtt gagttgaatg      1080
     attgtgcagg tgttgagcag cggatggaaa gagtatatcg atgtggcagg tgagaatgca      1140
     ctgccaagat atgatgccac ggcatacaac caaatgcttc tgaacgtcag gccaaacggc      1200
     gtcaacctta acggccctcc caagctcaag atgtctggct tgacatatct ccgtttgtcc      1260
     gacgatctgt tacagacaga caacttcgaa ctcttcaaga aattcgtcaa gaagatgcac      1320
     gctgatctg                                                              1329
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