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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY096751; SV 1; linear; mRNA; STD; PLN; 1279 BP.
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AC   AY096751;
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DT   07-MAY-2002 (Rel. 71, Created)
DT   20-SEP-2002 (Rel. 73, Last updated, Version 2)
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DE   Arabidopsis thaliana putative pectinacetylesterase (At3g05910) mRNA,
DE   complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1279
RA   Yamada K., Banh J., Chan M.M., Chang C.H., Chang E., Dale J.M., Deng J.M.,
RA   Goldsmith A.D., Lee J.M., Onodera C.S., Quach H.L., Tang C., Toriumi M.,
RA   Wu H.C., Yamamura Y., Yu G., Bowser L., Carninci P., Chen H., Cheuk R.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Kim C., Lam B., Lin J., Meyers M.C., Miranda M., Narusaka M.,
RA   Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   "Arabidopsis Open Reading Frame (ORF) Clones";
RL   Unpublished.
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RN   [2]
RP   1-1279
RA   Yamada K., Banh J., Chan M.M., Chang C.H., Chang E., Dale J.M., Deng J.M.,
RA   Goldsmith A.D., Lee J.M., Onodera C.S., Quach H.L., Tang C.C., Toriumi M.,
RA   Wu H.C., Yamamura Y., Yu G., Bowser L., Carninci P., Chen H., Cheuk R.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Kim C., Lam B., Lin J., Meyers M.C., Miranda M., Narusaka M.,
RA   Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   ;
RL   Submitted (16-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA
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CC   The RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length  cDNA'): Seki,M., Narusaka,M.,  Ishida,J.,
CC    Satou,M.,  Kamiya,A., Sakurai,T., Carninci,P.,  Kawai, J.,
CC   Hayashizaki,Y.  and  Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Yamada,K.,
CC   Banh,J., Chan,M.M., Chang,C.H., Chang,E., Dale,J.M., Deng,J.M.,
CC   Goldsmith,A.D., Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C.,
CC   Toriumi,M., Wu,H.C., Yamamura,Y., Yu,G., Bowser,L., Chen,H.,
CC   Cheuk,R., Jones,T., Karlin-Neumann,G., Kim,C., Lam,B., Lin,J.,
CC   Meyers,M.C., Miranda,M., Nguyen,M., Palm,C.J., Shinn,P.,
CC   Southwick,A., Davis,R.W., Ecker,J.R. and Theologis,A.
CC   Yamada,K. (SSP/PGEC) and Seki, M. (RIKEN GSC) contributed equally
CC   to this work.  Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP
CC   /PGEC) contributed equally to this work as PIs.
CC   Annotation is based on the January 2002 version of the Arabidopsis
CC   genome submitted to GenBank.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1279
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="3"
FT                   /mol_type="mRNA"
FT                   /clone="U11215"
FT                   /note="This clone is in pUNI 51. ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1248
FT                   /codon_start=1
FT                   /gene="At3g05910"
FT                   /product="putative pectinacetylesterase"
FT                   /db_xref="InterPro:IPR004963"
FT                   /db_xref="UniProtKB/TrEMBL:Q9SFF6"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="AAM20385.1"
FT                   /translation="MVKLLLVGFVVAGIILGTQANEYLDFNVTEIDRIEELEFGFSKYS
FT                   SNLNPLMVGLTLIRGADSGAVCLDGTLPGYHLHRGHGSGANSWLIQLEGGGWCNNIRTC
FT                   VYRKTTRRGSSNYMEKQLQFTGILSDKAQENPDFFNWNRVKLRYCDGASFSGDGQNQAA
FT                   QLQFRGERIWRAAIDDLKANGMRYANQALLSGCSAGGLAAILRCDEFRNLFPGSTKVKC
FT                   LSDAGLFLDTADVSGGRTIRNLYNGVVELQSVKNNLPRICTNHLDPTSCFFPQNLISQM
FT                   KTPLFIVNAAYDTWQIQSSIAPTSADPSGFWHDCRLNHGKCTPAQLRFLQGFREQMLRV
FT                   VKGFSMSRQNGLFINSCFAHCQTERQDTWFADDSPVIRKKAVAIAVGDWYFDRAEVKLV
FT                   DCPYPCDKSCHNLVFR"
FT   3'UTR           1249..1279
FT                   /gene="At3g05910"
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SQ   Sequence 1279 BP; 354 A; 248 C; 311 G; 366 T; 0 other;
     atggtgaagc ttttgttagt agggtttgtt gtggctggta taatactggg aactcaagca        60
     aatgaatatt tagatttcaa tgtgacagaa atagatcgca ttgaggaatt agagtttgga       120
     ttttccaaat atagctccaa tttgaaccct ttaatggttg gtctcaccct tatcagagga       180
     gctgattctg gagctgtttg tttggatgga acattgcctg gatatcactt gcaccgtgga       240
     catggatctg gagctaatag ctggctcatt caattggagg gaggaggatg gtgcaacaac       300
     atcaggacct gtgtatacag gaagactact cgacgtggtt cctctaatta tatggagaaa       360
     cagcttcagt ttacaggaat actgagtgac aaagctcaag aaaatcctga ctttttcaac       420
     tggaatagag ttaagcttcg ttactgcgat ggcgcttctt tcagtggaga tggccagaat       480
     caggctgcac aacttcagtt tagaggagag cgtatctgga gagccgcaat agatgatttg       540
     aaggcgaatg gaatgcgata cgccaatcag gcacttctct ccggatgctc tgctggtggt       600
     ttagcagcaa tcttgcgctg cgatgagttt aggaacttat tccctggatc aaccaaagtc       660
     aagtgcttga gtgatgcagg cttgttcttg gacactgccg atgtttcagg cggccgcaca       720
     atcaggaact tatacaatgg tgtcgtagaa ttgcagagtg tgaagaacaa tcttccacgt       780
     atatgcacaa accatcttga tccaacctcg tgtttcttcc cacaaaatct gatcagtcaa       840
     atgaaaactc cactttttat cgtcaacgca gcatatgata catggcagat tcaaagcagt       900
     atagctccaa catcagctga tcctagtgga ttttggcatg actgcagact aaaccatgga       960
     aaatgtactc ctgcacagtt gagattcttg caaggattca gggaacagat gcttagagta      1020
     gtcaagggct tctcaatgtc tagacagaat ggattgttca tcaattcttg ctttgctcac      1080
     tgccaaaccg agagacaaga tacttggttt gccgatgatt ctcctgttat caggaaaaag      1140
     gcggtggcaa tagctgtagg agattggtat ttcgatagag cggaagtgaa gttagtcgat      1200
     tgcccatacc cgtgtgacaa gagctgccac aacttggtgt tcagatgatt gtttgactat      1260
     gttctttatt ctctctcat                                                   1279
//
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