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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY096750; SV 1; linear; mRNA; STD; PLN; 1375 BP.
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AC   AY096750;
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DT   07-MAY-2002 (Rel. 71, Created)
DT   20-SEP-2002 (Rel. 73, Last updated, Version 2)
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DE   Arabidopsis thaliana putative glycosylation enzyme (At1g03520) mRNA,
DE   complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1375
RA   Yamada K., Banh J., Chan M.M., Chang C.H., Chang E., Dale J.M., Deng J.M.,
RA   Goldsmith A.D., Lee J.M., Onodera C.S., Quach H.L., Tang C., Toriumi M.,
RA   Wu H.C., Yamamura Y., Yu G., Bowser L., Carninci P., Chen H., Cheuk R.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Kim C., Lam B., Lin J., Meyers M.C., Miranda M., Narusaka M.,
RA   Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   "Arabidopsis Open Reading Frame (ORF) Clones";
RL   Unpublished.
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RN   [2]
RP   1-1375
RA   Yamada K., Banh J., Chan M.M., Chang C.H., Chang E., Dale J.M., Deng J.M.,
RA   Goldsmith A.D., Lee J.M., Onodera C.S., Quach H.L., Tang C.C., Toriumi M.,
RA   Wu H.C., Yamamura Y., Yu G., Bowser L., Carninci P., Chen H., Cheuk R.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Kim C., Lam B., Lin J., Meyers M.C., Miranda M., Narusaka M.,
RA   Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   ;
RL   Submitted (16-APR-2002) to the EMBL/GenBank/DDBJ databases.
RL   Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA
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CC   The RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length  cDNA'): Seki,M., Narusaka,M.,  Ishida,J.,
CC    Satou,M.,  Kamiya,A., Sakurai,T., Carninci,P.,  Kawai, J.,
CC   Hayashizaki,Y.  and  Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Yamada,K.,
CC   Banh,J., Chan,M.M., Chang,C.H., Chang,E., Dale,J.M., Deng,J.M.,
CC   Goldsmith,A.D., Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C.,
CC   Toriumi,M., Wu,H.C., Yamamura,Y., Yu,G., Bowser,L., Chen,H.,
CC   Cheuk,R., Jones,T., Karlin-Neumann,G., Kim,C., Lam,B., Lin,J.,
CC   Meyers,M.C., Miranda,M., Nguyen,M., Palm,C.J., Shinn,P.,
CC   Southwick,A., Davis,R.W., Ecker,J.R. and Theologis,A.
CC   Yamada,K. (SSP/PGEC) and Seki, M. (RIKEN GSC) contributed equally
CC   to this work.  Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP
CC   /PGEC) contributed equally to this work as PIs.
CC   Annotation is based on the January 2002 version of the Arabidopsis
CC   genome submitted to GenBank.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1375
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="1"
FT                   /mol_type="mRNA"
FT                   /clone="U11159"
FT                   /note="This clone is in pUNI 51. ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1344
FT                   /codon_start=1
FT                   /gene="At1g03520"
FT                   /product="putative glycosylation enzyme"
FT                   /db_xref="GOA:Q9LR71"
FT                   /db_xref="InterPro:IPR003406"
FT                   /db_xref="UniProtKB/TrEMBL:Q9LR71"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="AAM20384.1"
FT                   /translation="MRKLYRKLVSFRDPFARVKRHVSSHSGFRAFSDRKWLFPFLASLI
FT                   MSITLLILLISGQFDNFFGEEDQLPVDVVSESNDYFVESDFKQSMNSTADVNPEPPRLA
FT                   YLISGTKGDSHRMMRTLQAVYHPRNQYVLHLDLEAPPRERMELAMSVKTDPTFREMENV
FT                   RVMAQSNLVTYKGPTMIACTLQAVSILLRESLHWDWFLNLSASDYPLVTQDDLLYVFSN
FT                   LSRNVNFIENMQLTGWKLNQRAKSIIVDPALYLSKKSDIAWTTQRRSLPNSFRLFTGSA
FT                   WIMLTRSFLEYCIWGWDNFPRTILMYYTNFVSSPEGYFHTVICNSKEFINTAIGHDLHY
FT                   IAWDSPPKQHPRSLSLKDFDNMVKSKAPFARKFHKNDPALDKIDKELLGRTHRFAPGGW
FT                   CVGSSANGNDQCSVQGDDSVLKPGPGSERLQELVQTLSSEEFRRKQCS"
FT   3'UTR           1345..1375
FT                   /gene="At1g03520"
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SQ   Sequence 1375 BP; 383 A; 286 C; 299 G; 407 T; 0 other;
     atgagaaaat tgtataggaa gctggtttca ttcagagacc catttgctag ggtcaagaga        60
     catgttagtt cacattcagg gtttagagct ttcagcgaca gaaaatggtt gttccctttt       120
     ctagctagct tgatcatgtc cattactctt ctgattttgt taatttctgg ccaattcgac       180
     aacttctttg gggaagaaga tcaattacca gttgatgttg tttcagagtc taatgactac       240
     tttgtagaat cagatttcaa gcaatctatg aattcgacgg ctgatgttaa tccagagcct       300
     cctagattag cttatttaat atcgggaaca aaaggcgata gtcataggat gatgaggact       360
     ttacaagctg tgtaccatcc tagaaaccag tatgttctgc atttggatct tgaggctcca       420
     cctcgagaac ggatggagct ggccatgtcc gtgaagactg atccgacttt ccgtgaaatg       480
     gagaatgttc gtgtgatggc tcagtctaat cttgttactt ataaaggccc tacaatgatt       540
     gcttgtactc ttcaagccgt ttcaatcttg ctaagagaaa gcttacattg ggattggttt       600
     cttaacctta gtgcctcgga ttatcctcta gtaacacaag atgatttgtt gtatgtcttc       660
     tcaaatctgt ctcggaatgt caatttcatc gagaatatgc agctcaccgg atggaaactg       720
     aatcagaggg ctaaatcaat cattgttgat cctgccctat acctatcgaa gaaatccgat       780
     atcgcttgga ctactcaacg gcgatcactt ccaaattctt tcaggctatt cactggctca       840
     gcttggataa tgttgactcg gtctttcctc gagtactgca tttggggatg ggataatttc       900
     ccaagaacaa tactaatgta ctacacaaat ttcgtatctt ctcctgaagg atacttccac       960
     acagtaatct gcaacagcaa agagtttatc aacactgcaa tcggtcacga ccttcactac      1020
     attgcttggg acagtcctcc aaagcaacac cctagatctc tctcgttgaa ggattttgac      1080
     aatatggtca agagcaaagc tccatttgca cgcaagttcc acaaaaacga tcctgcgtta      1140
     gacaagatcg ataaagagct attgggacgg acacaccggt ttgcaccagg aggatggtgt      1200
     gtcgggagtt cagctaatgg caatgatcag tgctctgtgc aaggtgacga ctcggtgttg      1260
     aaaccaggac ctggttctga gaggttgcag gagcttgttc aaacactttc ctctgaagaa      1320
     tttaggcgaa aacagtgttc ttgaagttat ctactgatga cgcaaaatat aacgt           1375
//
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