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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY093369; SV 1; linear; mRNA; STD; PLN; 687 BP.
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AC   AY093369;
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DT   22-APR-2002 (Rel. 71, Created)
DT   22-APR-2002 (Rel. 71, Last updated, Version 1)
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DE   Arabidopsis thaliana pectinacetylesterase (At5g23870) mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-687
RA   Southwick A., Karlin-Neumann G., Nguyen M., Lam B., Miranda M., Palm C.J.,
RA   Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R., Chung M.K.,
RA   Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C., Lin J., Liu S.X.,
RA   Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RT   ;
RL   Submitted (26-MAR-2002) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
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CC   e-mail for correspondence: arab@sequence.stanford.edu
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Southwick,A.,
CC   Nguyen,M., Karlin-Neumann,G.,  Lam,B., Miranda,M., Palm,C.J.,
CC   Bowser,L., Jones,T., Banh,J., Chen,H., Cheuk,R., Chung,M.K.,
CC   Kim,C., Lin,J., Liu,S.X., Pham,P.K., Sakano,H., Shinn,P.,
CC   Yamada,K., Ecker,J., Theologis,A. and Davis,R.W.
CC   Southwick,A., (SSP/Stanford) and Seki,M. (RIKEN GSC) contributed
CC   equally to this work.  Shinozaki,K. (RIKEN GSC) and Davis,R.W.
CC   (SSP/Stanford)  contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..687
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="U16863"
FT                   /note="This clone is in pENTR/SD-dTopo   This is a cloned
FT                   PCR product using RIKEN clone RAFL09-06-B14 (AY062706) as a
FT                   template ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..627
FT                   /codon_start=1
FT                   /gene="At5g23870"
FT                   /product="pectinacetylesterase"
FT                   /db_xref="InterPro:IPR004963"
FT                   /db_xref="UniProtKB/TrEMBL:Q8W4A4"
FT                   /protein_id="AAM13368.1"
FT                   /translation="MSDAGFFLDAIDVAANRTMRSFYSQLVSLQGIQKNLDPSCTHAFF
FT                   PEPSLCFFPQYVLRFIKTPFFILNSAYDVFQFHHGLVPPSADQTGRWNRCKLNVTACNP
FT                   HQLDALQGFRKDMLGALMNFFRNSTRGGMFINSCFDHCQSALEETWLSPTSPRINNKTI
FT                   AETVGDWYFGRGEEAKEIGCPYPCDKTCHNLIPASTSDFLVNLDI"
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SQ   Sequence 687 BP; 200 A; 141 C; 128 G; 218 T; 0 other;
     atgagcgatg ctggattctt tcttgacgca atcgatgtag cagcaaaccg gacaatgaga        60
     tctttttact cacagcttgt gtctctacag ggtatacaaa aaaacctcga tccaagttgc       120
     acacacgcat ttttccccga accatctctg tgttttttcc cgcaatacgt attgcgattt       180
     atcaaaacgc catttttcat cttaaattca gcctacgatg tatttcagtt ccatcatgga       240
     ctggttccac cttctgctga tcaaaccgga cgttggaacc gttgtaagct taatgtgacg       300
     gcatgtaatc cacaccaact cgatgcacta caagggttta ggaaagatat gttgggagct       360
     ttaatgaatt tcttcagaaa ttctacgaga ggaggaatgt ttataaactc atgctttgat       420
     cattgtcaaa gtgctttaga ggagacttgg ctctctccca catcaccaag aatcaacaat       480
     aagacaattg ctgagacggt cggagattgg tattttggga gaggagaaga agcgaaagaa       540
     attggttgtc catatccatg tgataaaaca tgtcataatc tcattccagc ttctacttca       600
     gattttttgg taaatctaga tatttaacat cttcttcaat tacagtttgc tatagttaat       660
     tacattattt tttccgcata attcact                                           687
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