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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY093280; SV 1; linear; mRNA; STD; PLN; 2138 BP.
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AC   AY093280;
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DT   22-APR-2002 (Rel. 71, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 2)
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DE   Arabidopsis thaliana endoplasmic reticulum alpha-mannosidase, putative
DE   (At1g30000) mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-2138
RA   Southwick A., Karlin-Neumann G., Nguyen M., Lam B., Miranda M., Palm C.J.,
RA   Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R., Chung M.K.,
RA   Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C., Lin J., Liu S.X.,
RA   Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RT   ;
RL   Submitted (26-MAR-2002) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
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CC   e-mail for correspondence: arab@sequence.stanford.edu
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Southwick,A.,
CC   Nguyen,M., Karlin-Neumann,G.,  Lam,B., Miranda,M., Palm,C.J.,
CC   Bowser,L., Jones,T., Banh,J., Chen,H., Cheuk,R., Chung,M.K.,
CC   Kim,C., Lin,J., Liu,S.X., Pham,P.K., Sakano,H., Shinn,P.,
CC   Yamada,K., Ecker,J., Theologis,A. and Davis,R.W.
CC   Southwick,A., (SSP/Stanford) and Seki,M. (RIKEN GSC) contributed
CC   equally to this work.  Shinozaki,K. (RIKEN GSC) and Davis,R.W.
CC   (SSP/Stanford)  contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2138
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="1"
FT                   /mol_type="mRNA"
FT                   /clone="U16427"
FT                   /note="This clone is in pENTR/SD-dTopo   This is a cloned
FT                   PCR product using RIKEN clone RAFL07-14-A20 (AY054482) as a
FT                   template ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1875
FT                   /codon_start=1
FT                   /gene="At1g30000"
FT                   /product="endoplasmic reticulum alpha-mannosidase,
FT                   putative"
FT                   /db_xref="GOA:Q93Y37"
FT                   /db_xref="HSSP:1FO3"
FT                   /db_xref="InterPro:IPR001382"
FT                   /db_xref="UniProtKB/TrEMBL:Q93Y37"
FT                   /protein_id="AAM13279.1"
FT                   /translation="MSKSLPYSVKDIHYDNAKFRHRSPLKVFSQSLLTLSTKRNYASCS
FT                   TGKFLILILFFGVACLMLMSKSPNESGLNEKGKVTFVGGLRLGGLLRKPPRLPPRLSPD
FT                   EGQLRGSSTNGSTISNSDPKWAARQQSVKEAFDHAWSGYRKYAMGYDELMPISQKGVDG
FT                   LGGLGATVVDALDTAMIMGLDNIVSEAGSWVETHLLERISQKGQVNLFETTIRVLGGLL
FT                   SAYHLSGGEQGTVNMTHVGPKPVIYLNIAKDLADRLLSAFTSSPTPVPFCDVILHESTA
FT                   HPAPGGASSTAEVASVQLEFNYLSSISGDPKYSTEAMKVLAHIKTLPKTEGLVPIYISP
FT                   QTGDFVGENIRLGSRGDSYYEYLIKVWLQQGAKLNSNFTYLHDMYIEAMKGVRHLLVQN
FT                   SIPKGLVFVGELPYGSKGEFSPKMDHLVCFLPGTLALGATKGLTKEQALKENLLSFEDL
FT                   ENLKLAEDLAKTCFEMYEVTATGLAPEIAYFHTKDYTEDGLDGGNKSSMYANDIIIKPA
FT                   DRHNLLRPETVESLFVLYRITKDTKYRDQGWQIFEAFEKYTKVKSGGYTSLDDVTEVPP
FT                   HRRDKMETFFLGETLKYLYLLFGDDSVIPLDKFVFNTEAHPLPIRRNT"
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SQ   Sequence 2138 BP; 648 A; 399 C; 472 G; 619 T; 0 other;
     atgtcgaaat ctctaccata ttcagttaaa gatattcatt acgacaatgc caagttcaga        60
     catcgatctc ctttaaaggt tttttctcaa agcttgctta ctcttagtac aaaacgcaac       120
     tacgctagct gtagcacggg gaagttcctt atattaatac tgttctttgg agtagcatgt       180
     ctaatgctga tgagtaagag tccaaatgaa tctggtctta atgagaaagg aaaggtcact       240
     tttgttgggg gacttaggct agggggactt ttgagaaagc cacctaggct tccacctcgt       300
     ttatcacctg acgaaggaca attaagagga agttccacta atggctcaac tatttcaaat       360
     tctgacccaa aatgggcagc taggcagcaa agtgtaaaag aggcttttga ccatgcatgg       420
     tctggctata gaaagtacgc catgggttat gacgagctaa tgcctattag ccagaaaggt       480
     gtggatggtt taggaggatt aggtgccact gttgtggatg ctcttgatac agccatgata       540
     atgggtcttg ataatatcgt ctctgaagca ggatcatggg ttgagactca tctcttggag       600
     agaatcagtc aaaaaggtca agttaatttg tttgaaacta caatacgtgt cttaggtggg       660
     cttctaagtg cataccattt gagtggagga gagcagggta cggtgaacat gacccatgtt       720
     ggaccgaaac cagtcatcta tctaaatatt gctaaggatt tggctgaccg tctactttcg       780
     gcttttacct ccagccctac tccagttccc ttttgtgatg tcatattgca tgaatcgact       840
     gctcatccag ctccaggagg agcgagcagt acagcagaag ttgcctctgt acagcttgaa       900
     tttaactacc tcagttctat ttctggtgat ccaaagtata gtacagaggc catgaaggtc       960
     ttagctcata taaaaacact tccaaagaca gaaggtcttg ttccaatcta tatcagccct      1020
     caaacaggtg actttgttgg tgagaatatc aggttgggat ctcgtggtga tagctactat      1080
     gagtatttaa ttaaggtgtg gcttcagcaa ggagctaagt tgaatagtaa tttcacatat      1140
     ttgcatgata tgtacattga ggcaatgaaa ggagtcaggc atttgcttgt gcaaaattca      1200
     attccaaaag gtctggtctt tgtaggggag ttaccttacg ggtctaaggg agaattcagt      1260
     ccaaaaatgg atcatttggt atgcttcttg cctggtactc ttgctctcgg tgctaccaag      1320
     ggcctcacaa aggaacaagc cctgaaggaa aatcttttgt cctttgagga cctagaaaat      1380
     ctgaaacttg cagaagattt agcgaaaaca tgctttgaga tgtatgaagt aactgccact      1440
     ggccttgctc cagaaattgc ttactttcac acaaaggatt acactgagga tggtcttgat      1500
     ggtgggaata agagttctat gtatgcaaat gacataatca ttaagcccgc tgatcgacat      1560
     aatctactgc gccctgaaac tgttgaatca ctctttgtcc tctatcgtat cacaaaagat      1620
     acaaaatacc gagatcaagg ttggcaaatt tttgaagctt ttgaaaagta cacaaaggtg      1680
     aaatcaggtg gatacacatc attggatgat gtaacagaag tgcctcctca tagaagagat      1740
     aagatggaga catttttcct tggtgaaaca ttgaagtact tatacttgct ctttggagat      1800
     gactcagtga taccattgga taagtttgtt ttcaacactg aagctcatcc attaccaata      1860
     agaagaaaca cctgaaggct tagttttgaa gactactcca gacaatacac acacacacac      1920
     acatacacaa acttaagaga gggtatggag aaagtgatgt atagtacact gccaattgga      1980
     gaagaagtta gttcgttgag gaaaaaaagt cataactttc aatgtaagat aagcttctgc      2040
     atccaaatta taacttaact cgtaaaagtt tttgcttgta gtagtaggtt tcttgagact      2100
     aatattctct cttttcgtta agctctcact tggcaaaa                              2138
//
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