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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY093200; SV 1; linear; mRNA; STD; PLN; 1414 BP.
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AC   AY093200;
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DT   22-APR-2002 (Rel. 71, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 2)
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DE   Arabidopsis thaliana alpha-galactosidase-like protein (At5g08380) mRNA,
DE   complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1414
RA   Southwick A., Karlin-Neumann G., Nguyen M., Lam B., Miranda M., Palm C.J.,
RA   Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R., Chung M.K.,
RA   Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C., Lin J., Liu S.X.,
RA   Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RT   ;
RL   Submitted (27-MAR-2002) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
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CC   e-mail for correspondence: arab@sequence.stanford.edu
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Southwick,A.,
CC   Nguyen,M., Karlin-Neumann,G.,  Lam,B., Miranda,M., Palm,C.J.,
CC   Bowser,L., Jones,T., Banh,J., Chen,H., Cheuk,R., Chung,M.K.,
CC   Kim,C., Lin,J., Liu,S.X., Pham,P.K., Sakano,H., Shinn,P.,
CC   Yamada,K., Ecker,J., Theologis,A. and Davis,R.W.
CC   Southwick,A., (SSP/Stanford) and Seki,M. (RIKEN GSC) contributed
CC   equally to this work.  Shinozaki,K. (RIKEN GSC) and Davis,R.W.
CC   (SSP/Stanford)  contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1414
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL09-30-H14 (R24083)"
FT                   /note="This clone is in pBluescript ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             72..1304
FT                   /codon_start=1
FT                   /gene="At5g08380"
FT                   /product="alpha-galactosidase-like protein"
FT                   /db_xref="GOA:Q8RWB9"
FT                   /db_xref="HSSP:1UAS"
FT                   /db_xref="InterPro:IPR013785"
FT                   /db_xref="UniProtKB/TrEMBL:Q8RWB9"
FT                   /protein_id="AAM13199.1"
FT                   /translation="MSRRAMVIKMPILMILISSMVMTMVESSRSVNNGHDDSEILRRHL
FT                   LTNGLGVTPPMGWNSWNHFSCNIDEKMIKETANALVTTGLSKLGYNYVNIDDCWAEISR
FT                   DSKGSLVPKKSTFPSGIKAVADYVHSKGLKLGIYSDAGYFTCSKTMPGSLGYEEHDAKT
FT                   FAEWGIDYLKYDNCNSDGSKPTVRYPVMTRALMKSGRPIFHSLCEWGDMHPALWGSPVG
FT                   NSWRTTNDIKDTWLSMISIADMNEVYAEHARPGGWNDPDMLEVGNGGMTKDEYIVHFSI
FT                   WAISKAPLLLGCDIRNMTKETMEIVANKEVIAINQDPHGVQAKKVRMEGDLEVWAGPLS
FT                   GYRVALLLLNRGPSRTSITALWEDIEIPANSIVEARDLWEHQTLKQKFVGNLTATVDSH
FT                   ACKLYVLKPVA"
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SQ   Sequence 1414 BP; 413 A; 275 C; 341 G; 385 T; 0 other;
     acaaagtaca aagcagtgtt cgtcaactat cttcttctca ctctgttttc gtttagagag        60
     attttgcaga gatgtcgaga cgagcaatgg tgataaagat gccaatactt atgatactga       120
     tttcatcaat ggtgatgacg atggtcgagt cttcgagatc agttaataat ggtcatgacg       180
     attctgagat cttacgaaga cacttgctca ctaatggcct cggagtcact cctcccatgg       240
     ggtggaatag ctggaaccat tttagctgca acatagatga aaaaatgatc aaagaaactg       300
     ctaatgcttt ggttaccact ggcctctcta agcttggcta caactatgtt aacatcgatg       360
     attgctgggc tgaaatttct cgtgacagca agggaagtct ggtgccaaag aagtcaactt       420
     tcccttctgg aattaaagcg gttgcggatt atgttcacag taaaggcctt aagcttggga       480
     tttactcaga tgccgggtat ttcacttgca gtaaaaccat gccaggttct ttaggctacg       540
     aggagcatga tgccaagaca tttgcagaat ggggaattga ttacttgaag tatgacaact       600
     gcaacagcga tggctctaaa cctactgtca ggtatccagt gatgactcga gctctgatga       660
     aatctggccg ccccatcttt cactcattgt gtgaatgggg agatatgcat ccagctctat       720
     ggggatctcc agtaggcaac agttggagaa ccactaatga cattaaagat acttggctta       780
     gtatgatctc aatagcagac atgaatgaag tctacgctga gcatgcaaga cctggtggct       840
     ggaacgaccc ggatatgctt gaagtgggaa atggagggat gacaaaagac gagtacatag       900
     tccatttcag catatgggca atctcaaagg ctcctcttct acttggttgt gacataagaa       960
     acatgaccaa agaaacaatg gagattgtcg ccaacaagga agtcattgct attaatcaag      1020
     atccacatgg tgttcaggcc aagaaagtta gaatggaagg cgatctcgag gtttgggcag      1080
     gaccattgtc aggttacaga gtagctttgc ttctattgaa ccgtggacca tcgcgaactt      1140
     cgattactgc tctttgggag gatattgaga tccctgcaaa tagcatcgtt gaagccagag      1200
     atctatggga gcaccagaca ttgaagcaaa agtttgtggg gaacttgaca gcaacagtgg      1260
     attctcatgc gtgtaagttg tatgttctca aacctgttgc ctgaaaatac atgtgtatag      1320
     agagagttag tgtggctacg tcacgttgta ttctccagtt attctgtaaa aacaataagg      1380
     gttcgtctca aattaaatct ccacagatgt tctt                                  1414
//
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