EBI Dbfetch

ID   AY090238; SV 1; linear; mRNA; STD; PLN; 1373 BP.
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AC   AY090238;
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DT   25-MAR-2002 (Rel. 71, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 3)
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DE   Arabidopsis thaliana AT5g08370/F8L15_100 mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1373
RA   Shinn P., Chen H., Cheuk R., Kim C.J., Meyers M.C., Banh J., Bowser L.,
RA   Carninci P., Chang E., Dale J.M., Goldsmith A.D., Hayashizaki Y.,
RA   Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B.,
RA   Lee J.M., Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S.,
RA   Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A.,
RA   Tang C.C., Toriumi M., Wu H.C., Yamada K., Yamamura Y., Yu G., Yu S.,
RA   Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Arabidopsis cDNA clones";
RL   Unpublished.
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RN   [2]
RP   1-1373
RA   Shinn P., Chen H., Cheuk R., Kim C.J., Meyers M.C., Banh J., Bowser L.,
RA   Carninci P., Chang E., Dale J.M., Goldsmith A.D., Hayashizaki Y.,
RA   Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B.,
RA   Lee J.M., Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S.,
RA   Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A.,
RA   Tang C.C., Toriumi M., Wu H.C., Yamada K., Yamamura Y., Yu G., Yu S.,
RA   Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (14-MAR-2002) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Shinn,P., Chen,H.,
CC   Cheuk,R., Kim,C.J.,  Meyers,M.C., Banh,J. Bowser,L., Chang,E.,
CC   Dale,J.M., Goldsmith,A.D., Jones,T., Karlin-Neumann,G., Lam,B.,
CC   Lee,J.M., Lin,J., Miranda,M., Nguyen,M., Onodera,C.S., Palm,C.J.,
CC   Quach,H.L., Southwick,A., Tang,C.C., Toriumi,M., Wu,H.C.,
CC   Yamada,K., Yamamura, Y., Yu,G., Yu,S., Davis,R.W.,  Theologis,A.,
CC   and Ecker,J.R.
CC   Shinn,P. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1373
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL09-34-C19(R21804)"
FT                   /note="ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             12..1202
FT                   /codon_start=1
FT                   /product="AT5g08370/F8L15_100"
FT                   /note="alpha-galactosidase-like protein"
FT                   /db_xref="GOA:Q8RX86"
FT                   /db_xref="HSSP:1UAS"
FT                   /db_xref="InterPro:IPR013785"
FT                   /db_xref="UniProtKB/TrEMBL:Q8RX86"
FT                   /protein_id="AAL90902.1"
FT                   /translation="MVLLSFSLRFIAFTLTITLTQIADGFQSRMLMNNGLALSPQMGWN
FT                   SWNHFQCNINETLIKQTADAMVSSGLSAIGYKYINIDDCWGELKRDSQGSLVAKASTFP
FT                   SGIKALSDYVHSKGLKLGIYSDAGTLTCSQTMPGSLGHEEQDAKTFASWGIDYLKYDNC
FT                   ENTGTSPRERYPKMSKALLNSGRSIFFSLCEWGQEDPATWAGDIGNSWRTTGDIQDNWK
FT                   SMTLIADQNDRWASYARPGSWNDPDMLEVGNGGMTKEEYMSHFSIWALAKAPLLIGCDL
FT                   RSMDKVTFELLSNKEVIAVNQDKLGIQGKKVKKEGDLEVWAGPLSKKRVAVILWNRGSA
FT                   SANITARWAEIGLNSSDIVNARDLWEHSTYSCVKKQLSALVEPHACKMYTLTRRKA"
FT   misc_difference 199
FT                   /replace="g"
FT                   /note="compared to genome"
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SQ   Sequence 1373 BP; 443 A; 255 C; 322 G; 353 T; 0 other;
     tggatcaagc aatggttctt cttagtttct ccttaagatt cattgcgttc actctgacta        60
     taactctgac tcagattgct gatgggtttc agagtcgaat gttgatgaac aatggacttg       120
     ctctctctcc tcaaatggga tggaacagct ggaatcattt tcagtgtaat atcaatgaaa       180
     cccttatcaa acaaaccgct gatgcaatgg tttcaagtgg tctttctgca ataggttaca       240
     agtatatcaa catagatgat tgttggggtg aactcaagag agattctcag gggagtttgg       300
     ttgcaaaagc atcaacattt ccttcaggaa tcaaagcttt atcagattat gttcatagca       360
     aagggctaaa acttgggata tactctgatg ccgggactct tacctgcagc caaaccatgc       420
     cgggatcact cgggcatgaa gaacaagatg ccaagacatt tgcctcatgg gggattgatt       480
     acctcaagta tgataactgc gaaaatacag ggacaagtcc aagagaaaga taccctaaga       540
     tgagtaaagc gctgttaaat tcaggaagat ccatattctt ctctctgtgc gaatggggac       600
     aagaggatcc agcaacttgg gcaggagata ttggcaacag ttggagaaca acaggagata       660
     tccaagataa ttggaaaagc atgacattga tagcggatca gaatgatcga tgggcatctt       720
     atgcaagacc aggatcgtgg aacgatccag acatgcttga agtgggaaat ggaggcatga       780
     ctaaggaaga atacatgtcg catttcagca tctgggcatt ggcaaaagct cctctgctga       840
     tcggctgcga tcttagatcg atggacaaag ttacatttga attgcttagc aacaaagagg       900
     tgattgctgt taatcaagac aaacttggga tccagggaaa gaaagtaaag aaagaaggtg       960
     atcttgaggt atgggcaggt ccactaagca agaaacgagt agcggtcatc ctatggaaca      1020
     gaggatcagc atctgcaaac atcacagctc gatgggctga gattggcctc aattcatcag      1080
     atattgttaa tgctcgtgac ttatgggagc attcgacata ttcatgtgtt aaaaagcagc      1140
     tatctgccct agtggagcct catgcctgca aaatgtatac tcttacaaga cgcaaggcat      1200
     aagatgccaa tctggtgcag ataaagttat ggaagtaaaa ctgatcaata gcaaaatcct      1260
     gttgaaagca gaagattgtg ccaaaacatc ttctggtttc agtttgtatc tactatgctg      1320
     aatataagat gccagaaaca gaaatactca atccaacttg cattatatta aag             1373
//