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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY089672; SV 1; linear; mRNA; STD; INV; 1573 BP.
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AC   AY089672;
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DT   19-MAR-2002 (Rel. 71, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 2)
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DE   Drosophila melanogaster RH44722 full insert cDNA.
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KW   FLI_CDNA.
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OS   Drosophila melanogaster (fruit fly)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila; Sophophora.
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RN   [1]
RP   1-1573
RA   Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J., Champe M.,
RA   Chavez C., Dorsett V., Dresnek D., Farfan D., Frise E., George R.,
RA   Gonzalez M., Guarin H., Kronmiller B., Li P., Liao G., Miranda A.,
RA   Mungall C.J., Nunoo J., Pacleb J., Paragas V., Park S., Patel S.,
RA   Phouanenavong S., Wan K., Yu C., Lewis S.E., Rubin G.M., Celniker S.;
RT   ;
RL   Submitted (12-MAR-2002) to the EMBL/GenBank/DDBJ databases.
RL   Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory,
RL   One Cyclotron Road, Berkeley, CA 94720, USA
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CC   Sequence submitted by:
CC   Berkeley Drosophila Genome Project
CC   Lawrence Berkeley National Laboratory
CC   Berkeley, CA 94720
CC   This clone was sequenced as part of a high-throughput process to
CC   sequence clones from Drosophila Gene Collection 1 (Rubin et al.,
CC   Science 2000). The sequence has been subjected to integrity checks
CC   for sequence accuracy, presence of a polyA tail and contiguity
CC   within 100 kb in the genome. Thus we believe the sequence to
CC   reflect accurately this particular cDNA clone.  However, there are
CC   artifacts associated with the generation of cDNA clones that may
CC   have not been detected in our initial analyses such as internal
CC   priming, priming from contaminating genomic DNA, retained introns
CC   due to reverse transcription of unspliced precursor RNAs, and
CC   reverse transcriptase errors that result in single base changes.
CC   For further information about this sequence, including its location
CC   and relationship to other sequences, please visit our Web site
CC   (http://fruitfly.berkeley.edu) or send email to
CC   cdna@fruitfly.berkeley.edu.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1573
FT                   /organism="Drosophila melanogaster"
FT                   /map="19C1-19C1"
FT                   /strain="y; cn bw sp"
FT                   /mol_type="mRNA"
FT                   /db_xref="taxon:7227"
FT   CDS             96..1349
FT                   /codon_start=1
FT                   /gene="CG17065"
FT                   /product="RH44722p"
FT                   /note="Longest ORF"
FT                   /db_xref="FLYBASE:FBgn0031099"
FT                   /db_xref="GOA:Q9VR81"
FT                   /db_xref="HSSP:1UN7"
FT                   /db_xref="InterPro:IPR003764"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9VR81"
FT                   /protein_id="AAL90410.1"
FT                   /translation="MDVRIKCNSEEPESPEQKILASSQRLLQFTNCRLVRDHRIIHDDL
FT                   WVRDGRIVNPEPVFFDERTKAHCRIDCGGAIIAPGYIDLQINGGYGVDFSYDTETIEEG
FT                   VATVARGLVKSGVTSFCPTLVTSPSDSYHTILPRIPAEVPKGAGILGIHAEGPFINPQK
FT                   KGAHPEHCIQTIDKGLSTLKETYGSLERIKIITLAPEKVTDPEVIGQLVERGITVALGH
FT                   SMASLSDGERAVQQGATLITHLFNAMLPFHHRDPGLVGLLASDAVPHGRTVYFGIISDG
FT                   VHTHPAALRIAYRTHPQGLILVTDAISALGLEEGVHHIGQLPLQVKQGKAFIAGTETLC
FT                   GSIAPMDECVRIFQKATDCSVVYAIEAATLHPAQCLKIEKQKGTLDFGSDADFVLLDDQ
FT                   LRVLSTWIAGVCVHRTVK"
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SQ   Sequence 1573 BP; 340 A; 472 C; 455 G; 306 T; 0 other;
     gtcagtttag tttacgctcc cctgtttatt tgcgagccat cgctcattcc gcccgcaacg        60
     ccagccccgc cccctgcgct ccgcagcccc caccaatgga cgttcggatt aagtgcaaca       120
     gcgaggagcc agagtctccg gagcagaaga tcctggcgag cagccagcgc ctgctgcagt       180
     tcaccaactg ccgccttgta cgcgaccacc ggatcatcca cgacgatctg tgggttcgcg       240
     acggtcggat cgtgaaccca gagcctgtgt tcttcgacga gcggaccaag gcccactgtc       300
     gcatcgactg cgggggcgcc atcatcgcgc ccggctacat cgacctccag atcaatggtg       360
     gctatggcgt ggacttctcg tacgacacgg agaccatcga ggagggcgtg gccacggtgg       420
     cacgcggcct ggtcaagagc ggagtcacct ccttctgtcc cacgctggtg acctcgccca       480
     gcgacagcta ccacaccatc ctgccgcgca ttcccgcaga ggttcccaag ggcgccggca       540
     tactgggcat ccatgcggag ggtccgttta tcaatccgca gaaaaagggc gcgcatccgg       600
     agcactgcat ccagaccatt gataagggac tcagcacgct gaaggagacg tacggctcgc       660
     tggaacgcat taaaatcatc accctggcgc cggagaaggt caccgacccg gaggtgattg       720
     gccagctggt ggagcgtggc atcaccgtgg ccctgggcca ctcgatggcc tcgctaagcg       780
     acggagagag ggccgtgcag cagggcgcca cgctgatcac gcatctgttc aacgccatgc       840
     tgccgttcca tcaccgcgat cccggcctgg tgggactgct ggcctcggac gcagtgccgc       900
     acggtaggac cgtgtacttc ggcatcatct cggacggagt gcacactcat ccggcggcac       960
     tgaggatcgc ctaccgcacg catccgcagg gcctgatcct ggtgacggac gccatatcgg      1020
     cgctgggcct cgaggagggt gtccaccaca tcggacagct gccgctgcag gttaagcagg      1080
     gcaaggcgtt catcgcaggc acagagacgc tgtgcggcag catcgccccg atggacgagt      1140
     gcgtgcggat cttccagaag gcgaccgact gctccgtggt ctatgccatc gaggcggcca      1200
     ccttgcatcc agcacagtgc ctgaagatcg aaaagcagaa gggcaccctg gactttggct      1260
     cggacgcgga cttcgttctc ctggacgacc agctccgggt gctatccacc tggatcgctg      1320
     gcgtatgtgt tcataggact gtcaagtagc gcatcgaatg tgcaactgtt gcaattgttt      1380
     ttatttacct gatgcaggat gcaggattct acaccgaaga ttctccaaat aaattgttaa      1440
     acttatacat tccaattgaa ggagcttgag attcttgtga gtgcagccaa ggatgttcaa      1500
     atgaattgtt taacgatgat tgtttgccat ttgaaataag gaatcactca ctggtttaaa      1560
     aaaaaaaaaa aaa                                                         1573
//
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