EBI Dbfetch

ID   AY088488; SV 1; linear; mRNA; STD; PLN; 1593 BP.
XX
AC   AY088488;
XX
DT   14-JUN-2002 (Rel. 72, Created)
DT   24-FEB-2006 (Rel. 86, Last updated, Version 5)
XX
DE   Arabidopsis thaliana clone 7119 mRNA, complete sequence.
XX
KW   FLI_CDNA.
XX
OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1593
RX   PUBMED; 12093376.
RA   Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N.,
RA   Feldmann K.A., Flavell R.B., White O., Salzberg S.L.;
RT   "Full-length messenger RNA sequences greatly improve genome annotation";
RL   Genome Biol. 3(6):RESEARCH0029-RESEARCH0029(2002).
XX
RN   [2]
RP   1-1593
RA   Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.;
RT   "Features of Arabidopsis genes and genome discovered using full-length
RT   cDNAs";
RL   Plant Mol. Biol. 60(1):71-87(2006).
XX
RN   [3]
RP   1-1593
RA   Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.;
RT   ;
RL   Submitted (11-MAR-2002) to the EMBL/GenBank/DDBJ databases.
RL   Ceres, Inc, 3007 Malibu Canyon Road, Malibu, CA 90265, USA
XX
CC   This clone sequence is one of 5,000 Ceres full-length cDNAs made
CC   available to TIGR and Genbank. The following quality assessment of
CC   this set was done by comparison with known proteins: two percent of
CC   the clones are estimated to be 5'-truncated; less than one percent
CC   are 3'-truncated; approximately two percent represent alternative
CC   splice variants, including unspliced introns and spliced exons; one
CC   percent may contain premature stop codons; five percent may have
CC   frame shifts in a coding region. A sequence is considered to be
CC   5'-truncated if it lacks the translation initiation start (ATG). A
CC   sequence is considered to be 3'-truncated if it lacks the
CC   C-terminal end of the encoded protein. Please note that these cDNA
CC   sequences are derived from the Ws or LAer ecotypes and therefore
CC   may contain polymorphisms when compared to sequences from Col-0.
CC   Genset carried out the library production and sequencing of the
CC   full-length clones. Ceres, Inc. carried out the clustering of the
CC   5' sequences, selection of clones, and sequence assembly.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1593
FT                   /organism="Arabidopsis thaliana"
FT                   /mol_type="mRNA"
FT                   /clone="7119"
FT                   /db_xref="taxon:3702"
FT   CDS             49..1431
FT                   /codon_start=1
FT                   /product="beta-1,3-glucanase-like protein"
FT                   /db_xref="GOA:Q8L9D9"
FT                   /db_xref="HSSP:1GHS"
FT                   /db_xref="InterPro:IPR000490"
FT                   /db_xref="InterPro:IPR012946"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="InterPro:IPR017853"
FT                   /db_xref="UniProtKB/TrEMBL:Q8L9D9"
FT                   /protein_id="AAM66024.1"
FT                   /translation="MAVFVLSLLILSSFSAIPFTYADSGMIGVNYGRIADNLPAPEKVV
FT                   ELLKTQGINRIKLYNTETTVLTALANSGIKVVVSLPNENLASAAADQSYTDTWVQDNIK
FT                   KYIPATDIEAIAVGNEVFVDPRNTTTYLVPAMKNVQSSLVKFNLDKSIKISSPIALSAL
FT                   ASSYPPSAGSFKPELVEPVIKPMLDLLRKTSSHLMVNAYPFFAYAANADKISLDYALFK
FT                   ENAGNVDSGNGLKYNSLLDAQIDAVFAAMSAVGFNDVKLVVTETGWPSAGDENEIGAGS
FT                   ANAAAYNGGLVKRVLTGNGTPLKPKEPLNVYLFALFNENQKTGPTSERNYGLFYPNESK
FT                   VYDVSLNGKSTPVNDNKEKVVPVKPSLVGQTWCVANGKTTKEKLQEGLDYACGEGGADC
FT                   RPIQPGATCYNPESLEAHASYAFNSYYQKNARGVGTCNFGGAAYVVSQPPKYGKCEFPT
FT                   GH"
XX
SQ   Sequence 1593 BP; 420 A; 360 C; 381 G; 432 T; 0 other;
     gaatacaaaa actgaaacct ttctctattt atctctctat acacaacaat ggcggtcttc        60
     gttttatctc tactcatact ctcttccttc tcagccattc cattcactta tgcagattct       120
     ggaatgatcg gagttaacta cggccgtata gcagacaatc ttccggcacc ggagaaagta       180
     gttgagctac tgaaaacaca aggaatcaac cgcatcaagc tttacaacac cgagacaact       240
     gtactaaccg cactcgcgaa ctccggaatc aaagtcgttg tctctctccc caacgaaaac       300
     ctcgcttccg ccgccgcaga tcagagctac accgacactt gggttcagga caacataaag       360
     aagtacattc cagcgacgga tatcgaagca atcgctgtcg ggaacgaagt gttcgtcgat       420
     ccgaggaaca cgacgacgta tctcgttcca gctatgaaga atgttcaaag ctctctcgtc       480
     aagttcaatc tcgacaaatc cattaagatc tcgtcgccga ttgctctaag cgcgttggcg       540
     agttcgtatc caccgtctgc tggttctttt aaaccggagt tagtcgaacc ggttattaaa       600
     ccgatgcttg atctcctccg caaaacgtcg tcgcatctca tggtgaatgc ttatcctttc       660
     ttcgcttacg cagctaacgc cgataagatc tcgttagatt acgctttgtt taaagaaaac       720
     gccgggaatg ttgattcagg caacggattg aagtataaca gtctcttaga cgctcagatc       780
     gacgccgttt tcgctgctat gtccgctgtt ggatttaacg acgttaagct cgtagtgacg       840
     gagacaggct ggccttctgc tggagatgag aacgagattg gtgctggttc ggctaatgcg       900
     gcggcgtata acggtggatt agtgaagaga gtgttgacgg gaaacggaac gccgttaaaa       960
     ccgaaggagc cacttaacgt ttatctgttc gctctgttta acgagaatca gaaaacgggt      1020
     ccgacttctg agagaaacta cgggttgttt tacccaaacg agagcaaagt gtatgacgtt      1080
     tcgctcaacg gtaagtcaac accggtcaac gataacaaag agaaggttgt tccggtgaaa      1140
     ccgtcgctcg tgggacagac gtggtgtgtg gcgaatggta aaacgacgaa ggagaagctt      1200
     caggaaggtc tcgactacgc ttgtggcgaa ggaggtgctg attgccgtcc gattcaaccg      1260
     ggtgccacgt gttataatcc tgaatcgtta gaagctcacg cttcctacgc gttcaacagt      1320
     tactatcaga agaacgcacg tggagttggc acgtgtaatt ttggtggtgc agcgtacgtg      1380
     gtctcgcaac ctcctaagta tgggaaatgc gagtttccaa cagggcattg aaatggatat      1440
     ggagaagaag aggatcgtgc ggatttattt acgttattta ttttgataca ttgttctttt      1500
     gtcattcgag tatatgattt gcgtatattt atttttatta ttgtatattt ggttggtttc      1560
     atcggataaa tagtcagatt ttctttcccc ctc                                   1593
//