EBI Dbfetch

ID   AY087860; SV 1; linear; mRNA; STD; PLN; 1403 BP.
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AC   AY087860;
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DT   14-JUN-2002 (Rel. 72, Created)
DT   24-FEB-2006 (Rel. 86, Last updated, Version 4)
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DE   Arabidopsis thaliana clone 39005 mRNA, complete sequence.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1403
RX   PUBMED; 12093376.
RA   Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N.,
RA   Feldmann K.A., Flavell R.B., White O., Salzberg S.L.;
RT   "Full-length messenger RNA sequences greatly improve genome annotation";
RL   Genome Biol. 3(6):RESEARCH0029-RESEARCH0029(2002).
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RN   [2]
RP   1-1403
RA   Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.;
RT   "Features of Arabidopsis genes and genome discovered using full-length
RT   cDNAs";
RL   Plant Mol. Biol. 60(1):71-87(2006).
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RN   [3]
RP   1-1403
RA   Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.;
RT   ;
RL   Submitted (11-MAR-2002) to the EMBL/GenBank/DDBJ databases.
RL   Ceres, Inc, 3007 Malibu Canyon Road, Malibu, CA 90265, USA
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CC   This clone sequence is one of 5,000 Ceres full-length cDNAs made
CC   available to TIGR and Genbank. The following quality assessment of
CC   this set was done by comparison with known proteins: two percent of
CC   the clones are estimated to be 5'-truncated; less than one percent
CC   are 3'-truncated; approximately two percent represent alternative
CC   splice variants, including unspliced introns and spliced exons; one
CC   percent may contain premature stop codons; five percent may have
CC   frame shifts in a coding region. A sequence is considered to be
CC   5'-truncated if it lacks the translation initiation start (ATG). A
CC   sequence is considered to be 3'-truncated if it lacks the
CC   C-terminal end of the encoded protein. Please note that these cDNA
CC   sequences are derived from the Ws or LAer ecotypes and therefore
CC   may contain polymorphisms when compared to sequences from Col-0.
CC   Genset carried out the library production and sequencing of the
CC   full-length clones. Ceres, Inc. carried out the clustering of the
CC   5' sequences, selection of clones, and sequence assembly.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1403
FT                   /organism="Arabidopsis thaliana"
FT                   /mol_type="mRNA"
FT                   /clone="39005"
FT                   /db_xref="taxon:3702"
FT   CDS             107..1282
FT                   /codon_start=1
FT                   /product="pectin acetylesterase"
FT                   /db_xref="InterPro:IPR004963"
FT                   /db_xref="UniProtKB/TrEMBL:Q8LAE9"
FT                   /protein_id="AAM65412.1"
FT                   /translation="MTRLKQMWSSILVLAVVVIGARAVPITYLESAVAKGAVCLDGSAP
FT                   AYHFDKGSGSGVNNWIVHMEGGGWCTDIATCVQRKSTMKGSSKLMNKDFGFSGILGGKQ
FT                   STNPDFYNWNRIKVRYCDGSSFTGDIEAVDPANKLFFRGARVWRAVIDDLMAKGMSNAQ
FT                   NAILSGCSAGALAAILHCDQFKSTLPKTAKVKCVSDAGYFIHGKDITGGSYIQSYYAKV
FT                   VATHGSAKSLPASCTSSMKPELCFFPQYVAKTLQTPLFVINAAFDSWQIKNVLAPTSVD
FT                   KSKAWKTCKLDLKKCTAAQLQTVQGYRDQVLAALAPVQSATTNGLFLDSCHAHCQGGSA
FT                   ATWSGDKGPTVANTKMAKAVGDWFFERSTFQNVDCSSLNCNPTCPAVSTED"
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SQ   Sequence 1403 BP; 385 A; 295 C; 319 G; 404 T; 0 other;
     gtaaacctta ctctcgaaga gtcctctttt actcatttta cattgtaaaa aaaaacttct        60
     attcttctct acgtgaataa gaatctgaag agtcattttc tcaagaatga ccaggttaaa       120
     acaaatgtgg tcaagcattt tagtgctagc cgtggtggtg atcggagcca gagctgttcc       180
     catcacgtat cttgaatctg cagtggctaa aggagctgtg tgtttggatg gtagcgcgcc       240
     agcataccat ttcgataagg gatctggctc aggagtgaac aattggatcg ttcatatgga       300
     aggaggagga tggtgcactg atatagctac atgcgttcaa cgtaaaagta caatgaaggg       360
     ttcttctaag cttatgaaca aagactttgg tttctccggt atcttgggtg gcaagcaaag       420
     caccaatcca gacttttaca attggaatag aatcaaagtt cggtattgcg atggttcatc       480
     tttcaccggt gatatagaag ctgttgatcc ggcgaacaag ctgttctttc gcggtgctag       540
     ggtttggcgt gcggtgatcg atgatcttat ggctaaggga atgagcaacg ctcaaaacgc       600
     tatactctct ggttgttcag ctggagcatt ggctgcgatt ctacattgcg accagttcaa       660
     gtccactctc cctaaaacgg ctaaggtcaa atgtgtatct gacgccggtt acttcatcca       720
     cggtaaggat atcactggag gatcttacat ccaatcctac tacgccaaag tcgtagcgac       780
     ccacggatct gcaaagagtc tacctgcttc ttgcacctca agtatgaagc ctgaattgtg       840
     tttcttccct caatacgttg ctaagacctt acaaacaccg cttttcgtca tcaatgccgc       900
     cttcgattct tggcagatca agaatgtatt ggcaccaacc tctgttgata aaagcaaagc       960
     gtggaagact tgtaagcttg atcttaagaa gtgtacggcc gctcagcttc aaaccgttca      1020
     aggatataga gaccaagtgt tggctgcgtt ggcacctgtt caatccgcga cgacgaacgg      1080
     attgttcttg gactcgtgcc atgctcattg ccaaggtgga agcgctgcca cttggtcagg      1140
     cgacaaaggt cccacagtcg cgaatacgaa aatggctaag gcggttggag attggttctt      1200
     tgagaggagt acgtttcaga acgtagattg ttcatcgctg aattgcaacc ctacttgccc      1260
     tgcagtatct actgaagact aaaatttatt cattgatgtc ttaaaattta ttcatctttg      1320
     gaatattgtt cttgaaattt aaaagtaaaa taatataatt gatacaattt cattcgaata      1380
     aataaaatca tttgcccttc tgc                                              1403
//