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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY087390; SV 1; linear; mRNA; STD; PLN; 1670 BP.
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AC   AY087390;
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DT   14-JUN-2002 (Rel. 72, Created)
DT   24-FEB-2006 (Rel. 86, Last updated, Version 4)
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DE   Arabidopsis thaliana clone 34861 mRNA, complete sequence.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1670
RX   PUBMED; 12093376.
RA   Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N.,
RA   Feldmann K.A., Flavell R.B., White O., Salzberg S.L.;
RT   "Full-length messenger RNA sequences greatly improve genome annotation";
RL   Genome Biol. 3(6):RESEARCH0029-RESEARCH0029(2002).
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RN   [2]
RP   1-1670
RA   Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.;
RT   "Features of Arabidopsis genes and genome discovered using full-length
RT   cDNAs";
RL   Plant Mol. Biol. 60(1):71-87(2006).
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RN   [3]
RP   1-1670
RA   Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.;
RT   ;
RL   Submitted (11-MAR-2002) to the EMBL/GenBank/DDBJ databases.
RL   Ceres, Inc, 3007 Malibu Canyon Road, Malibu, CA 90265, USA
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CC   This clone sequence is one of 5,000 Ceres full-length cDNAs made
CC   available to TIGR and Genbank. The following quality assessment of
CC   this set was done by comparison with known proteins: two percent of
CC   the clones are estimated to be 5'-truncated; less than one percent
CC   are 3'-truncated; approximately two percent represent alternative
CC   splice variants, including unspliced introns and spliced exons; one
CC   percent may contain premature stop codons; five percent may have
CC   frame shifts in a coding region. A sequence is considered to be
CC   5'-truncated if it lacks the translation initiation start (ATG). A
CC   sequence is considered to be 3'-truncated if it lacks the
CC   C-terminal end of the encoded protein. Please note that these cDNA
CC   sequences are derived from the Ws or LAer ecotypes and therefore
CC   may contain polymorphisms when compared to sequences from Col-0.
CC   Genset carried out the library production and sequencing of the
CC   full-length clones. Ceres, Inc. carried out the clustering of the
CC   5' sequences, selection of clones, and sequence assembly.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1670
FT                   /organism="Arabidopsis thaliana"
FT                   /mol_type="mRNA"
FT                   /clone="34861"
FT                   /db_xref="taxon:3702"
FT   CDS             238..1485
FT                   /codon_start=1
FT                   /product="unknown"
FT                   /db_xref="GOA:Q8LB70"
FT                   /db_xref="InterPro:IPR004263"
FT                   /db_xref="UniProtKB/TrEMBL:Q8LB70"
FT                   /protein_id="AAM64940.1"
FT                   /translation="MKLSSCVLIFLLCNTFSSISAFRLSRSQPTERISGSAGDVLEDDP
FT                   VGRLKVFVYELPSKYNKKILQKDPRCLNHMFAAEIYMQRFLLSSPVRTLNPEEADWFYV
FT                   PVYTTCDLTPNGLPLPFKSPRMMRSAIQLIASNWPYWNRTEGADHFFVVPHDFRACFHY
FT                   QEEKAIGRGILPLLQRATLVQTFGQRNHVCLKEGSITVPPYAPPQKMQSHLIPEKTPRS
FT                   IFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKDNPLFDISTEHPTTYYEDMQRAIFC
FT                   LCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEDIGVFVDEKDVPYLDTIL
FT                   TSIPPEVILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKLPHERSVYLRPGE
FT                   KLLNWTAGPVADLKPW"
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SQ   Sequence 1670 BP; 451 A; 336 C; 389 G; 494 T; 0 other;
     atcttcaaat gaaaatcgct gggctctcgc tgtcaacgct gggcgtgagt gagatctaac        60
     aatcggtagc gaattttgta aattttgttc cggttttgaa gtctcaatct cggggttccg       120
     gttttagcaa ctacttcttc tgacatttca gctgttctag ttgatcttta tatactttat       180
     atgatctggg attttgaaga gtttttaggg aggaaccaaa atttctgaga gagaaaaatg       240
     aagttatcga gctgcgtttt gatcttcctt ctatgtaaca cattctcctc gatttctgct       300
     ttccgtctga gtcggagtca accaactgag cgaatttcag gtagtgctgg tgatgtgttg       360
     gaagatgatc ccgtgggaag actgaaagtc tttgtttatg agcttccaag taaatacaac       420
     aagaagatac ttcagaagga tccgagatgt ctaaaccaca tgtttgctgc tgagatatat       480
     atgcaacggt ttcttttatc tagcccagtt cgaacactta atcccgagga agctgattgg       540
     ttctacgtac ctgtgtacac cacttgtgat ctcacgccta atgggcttcc tcttcctttt       600
     aaatctccac gaatgatgag aagtgccatt cagcttattg cttccaattg gccatactgg       660
     aatcgcacag aaggagcaga ccacttcttt gttgtgcctc atgactttag agcctgtttc       720
     cattatcaag aagagaaggc aataggaaga ggaatactac ccttgcttca acgagctaca       780
     ctggtgcaga catttggaca aaggaatcat gtttgcttga aagaaggttc aatcactgtt       840
     cctccatatg ctccaccaca gaagatgcag tcacacttaa ttcccgaaaa aactcctcga       900
     tccatcttcg tttatttcag aggattgttt tatgatgtgg gaaatgaccc tgagggtggt       960
     tattatgcga ggggtgcaag agcagctgta tgggaaaact tcaaagacaa tccgctgttt      1020
     gacatctcaa cagagcaccc aacaacatat tatgaggaca tgcagagagc aatcttctgc      1080
     ctatgcccac ttggatgggc cccatggagt ccaagactgg tggaagcagt gatattcggt      1140
     tgcatccctg tgatcatagc agacgacatc gtgttacctt ttgcagatgc aatcccttgg      1200
     gaagatattg gtgtgtttgt ggatgagaaa gatgtccctt acctggacac aatactcaca      1260
     tcgatcccac cagaggttat actgagaaaa cagaggttgt tggcaaaccc gtcgatgaaa      1320
     caagccatgc tgttcccgca accggctcaa ccaggggatg cgtttcatca agtattgaat      1380
     gggttggctc gtaagctgcc tcatgagagg agtgtgtatc tgagaccagg tgagaagctg      1440
     ttgaactgga cggcaggacc ggtcgctgat ctgaaacctt ggtaaggacc agtgttggaa      1500
     tttgattgaa tgagctattg tttggttggt ttctgtcttc tcgtgtctgt attttgtaga      1560
     atcataactt ttttttgcta tgtagaaggg aaaaagcttt gtcattgtaa tgtaactaga      1620
     atccttttga catctcacga gaaagacaag taaaagaaaa attattgtcc                 1670
//
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