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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY087371; SV 1; linear; mRNA; STD; PLN; 1389 BP.
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AC   AY087371;
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DT   14-JUN-2002 (Rel. 72, Created)
DT   24-FEB-2006 (Rel. 86, Last updated, Version 4)
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DE   Arabidopsis thaliana clone 34674 mRNA, complete sequence.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1389
RX   PUBMED; 12093376.
RA   Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N.,
RA   Feldmann K.A., Flavell R.B., White O., Salzberg S.L.;
RT   "Full-length messenger RNA sequences greatly improve genome annotation";
RL   Genome Biol. 3(6):RESEARCH0029-RESEARCH0029(2002).
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RN   [2]
RP   1-1389
RA   Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.;
RT   "Features of Arabidopsis genes and genome discovered using full-length
RT   cDNAs";
RL   Plant Mol. Biol. 60(1):71-87(2006).
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RN   [3]
RP   1-1389
RA   Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.;
RT   ;
RL   Submitted (11-MAR-2002) to the EMBL/GenBank/DDBJ databases.
RL   Ceres, Inc, 3007 Malibu Canyon Road, Malibu, CA 90265, USA
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CC   This clone sequence is one of 5,000 Ceres full-length cDNAs made
CC   available to TIGR and Genbank. The following quality assessment of
CC   this set was done by comparison with known proteins: two percent of
CC   the clones are estimated to be 5'-truncated; less than one percent
CC   are 3'-truncated; approximately two percent represent alternative
CC   splice variants, including unspliced introns and spliced exons; one
CC   percent may contain premature stop codons; five percent may have
CC   frame shifts in a coding region. A sequence is considered to be
CC   5'-truncated if it lacks the translation initiation start (ATG). A
CC   sequence is considered to be 3'-truncated if it lacks the
CC   C-terminal end of the encoded protein. Please note that these cDNA
CC   sequences are derived from the Ws or LAer ecotypes and therefore
CC   may contain polymorphisms when compared to sequences from Col-0.
CC   Genset carried out the library production and sequencing of the
CC   full-length clones. Ceres, Inc. carried out the clustering of the
CC   5' sequences, selection of clones, and sequence assembly.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1389
FT                   /organism="Arabidopsis thaliana"
FT                   /mol_type="mRNA"
FT                   /clone="34674"
FT                   /db_xref="taxon:3702"
FT   CDS             110..1285
FT                   /codon_start=1
FT                   /product="putative pectinacetylesterase protein"
FT                   /db_xref="GOA:Q940J8"
FT                   /db_xref="InterPro:IPR004963"
FT                   /db_xref="UniProtKB/TrEMBL:Q940J8"
FT                   /protein_id="AAM64921.1"
FT                   /translation="MGRLKQCWSSLLVLAVLVIGTGAVPITYLQSAVAKGAVCLDGSAP
FT                   AYHFDKGFGSGVNNWIVHMEGGGWCTDVASCNERKGTMKGSSKFMNKDFGFSGILGGKQ
FT                   STNPDFYNWNRIKVRYCDGSSFTGNVEAVNPANKLFFRGARVWRAVVDDLMAKGMKNAQ
FT                   NAILSGCSAGALAAILHCDTFRAILPRTASVKCVSDAGYFIHGKDITGGSYIQSYYSKV
FT                   VALHGSAKSLPVSCTSKMKPELCFFPQYVVPSMRTPLFVINAAFDSWQIKNVLAPTAVD
FT                   KGKEWKNCKLDLKKCSAAQLKTVQGFRDQMMRALSPVHSTPSRGLFLDSCHAHCQGGSA
FT                   ASWSGDKGPQVANTRIAKAVGNWFYGRSAFQKIDCPSPTCNPTCPAISTED"
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SQ   Sequence 1389 BP; 371 A; 307 C; 311 G; 400 T; 0 other;
     ataaactttt aaagctctct ctttcagatt cctctctatc catttcatta acaccaaaac        60
     ctttttcttc tctctaacca aacaagaaga ggactccatt ttcgcaagaa tggggaggct       120
     taagcaatgt tggtcaagtc tgctagtatt ggcagtgttg gtgatcggaa ctggagccgt       180
     tcccatcact tatctccaaa gcgccgtcgc taaaggagcc gtgtgtttgg atgggagtgc       240
     accagcttac cattttgaca aagggtttgg ttcgggtgtt aacaattgga tcgtccacat       300
     ggagggagga ggatggtgta ccgacgttgc ttcatgtaat gaacgtaagg gtacaatgaa       360
     gggttcttcc aaattcatga acaaagactt tggattttcc ggtatcttgg gtggcaagca       420
     aagcactaac ccagatttct acaattggaa cagaatcaaa gtacgatatt gtgacggatc       480
     atcctttacc ggcaatgtag aagccgttaa tccggcaaac aagctgttct tccgcggtgc       540
     ccgagtttgg cgtgcggtgg ttgatgatct tatggctaaa ggaatgaaaa acgctcaaaa       600
     cgctatactc tccggttgtt cagctggagc attggctgca attcttcatt gtgacacttt       660
     ccgtgccata cttccccgaa cagctagcgt caaatgtgtt tctgatgccg gttactttat       720
     ccacggtaaa gatatcacag gaggatcata cattcaatca tattacagca aagtcgtcgc       780
     actccacgga tctgcaaaga gtcttcctgt ttcttgtacc tcaaaaatga aaccagaact       840
     ctgtttcttc ccgcaatacg tcgttccttc catgcgaaca ccgctctttg tcatcaatgc       900
     cgcttttgat tcttggcaga tcaagaacgt tttggctcca actgctgttg ataagggaaa       960
     agagtggaag aattgtaagc ttgatcttaa gaaatgtagt gccgctcagc tcaaaaccgt      1020
     ccaagggttt agagatcaga tgatgcgagc attgtcaccg gttcacagta caccgtctag      1080
     aggattgttc ttagactcgt gtcacgctca ttgccaagga ggaagcgccg cctcttggtc      1140
     cggtgacaaa ggtccccaag tcgccaatac gagaattgcg aaagcagtcg gaaactggtt      1200
     ttatggccgg agtgcatttc agaagataga ttgtccgtcg ccgacttgta atcctacttg      1260
     tcctgctatc tctactgaag actagaatca tctctaaatg ttcaattttt ttttatttga      1320
     aattgaaaga gctcgcaaac attttggatt tgttttccaa atcggatcaa taataatcac      1380
     tgcaatttg                                                              1389
//
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