EBI Dbfetch

ID   AY087036; SV 1; linear; mRNA; STD; PLN; 1895 BP.
XX
AC   AY087036;
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DT   14-JUN-2002 (Rel. 72, Created)
DT   24-FEB-2006 (Rel. 86, Last updated, Version 5)
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DE   Arabidopsis thaliana clone 30798 mRNA, complete sequence.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1895
RX   PUBMED; 12093376.
RA   Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N.,
RA   Feldmann K.A., Flavell R.B., White O., Salzberg S.L.;
RT   "Full-length messenger RNA sequences greatly improve genome annotation";
RL   Genome Biol. 3(6):RESEARCH0029-RESEARCH0029(2002).
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RN   [2]
RP   1-1895
RA   Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.;
RT   "Features of Arabidopsis genes and genome discovered using full-length
RT   cDNAs";
RL   Plant Mol. Biol. 60(1):71-87(2006).
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RN   [3]
RP   1-1895
RA   Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.;
RT   ;
RL   Submitted (11-MAR-2002) to the EMBL/GenBank/DDBJ databases.
RL   Ceres, Inc, 3007 Malibu Canyon Road, Malibu, CA 90265, USA
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CC   This clone sequence is one of 5,000 Ceres full-length cDNAs made
CC   available to TIGR and Genbank. The following quality assessment of
CC   this set was done by comparison with known proteins: two percent of
CC   the clones are estimated to be 5'-truncated; less than one percent
CC   are 3'-truncated; approximately two percent represent alternative
CC   splice variants, including unspliced introns and spliced exons; one
CC   percent may contain premature stop codons; five percent may have
CC   frame shifts in a coding region. A sequence is considered to be
CC   5'-truncated if it lacks the translation initiation start (ATG). A
CC   sequence is considered to be 3'-truncated if it lacks the
CC   C-terminal end of the encoded protein. Please note that these cDNA
CC   sequences are derived from the Ws or LAer ecotypes and therefore
CC   may contain polymorphisms when compared to sequences from Col-0.
CC   Genset carried out the library production and sequencing of the
CC   full-length clones. Ceres, Inc. carried out the clustering of the
CC   5' sequences, selection of clones, and sequence assembly.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1895
FT                   /organism="Arabidopsis thaliana"
FT                   /mol_type="mRNA"
FT                   /clone="30798"
FT                   /db_xref="taxon:3702"
FT   CDS             178..1788
FT                   /codon_start=1
FT                   /product="beta-amylase-like proten"
FT                   /db_xref="GOA:Q8VYW2"
FT                   /db_xref="HSSP:1FA2"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="UniProtKB/TrEMBL:Q8VYW2"
FT                   /protein_id="AAM64597.1"
FT                   /translation="MEVSVIGNPQARICRAELAYRELGFRFGSDVISGESRNRVSFCNQ
FT                   SSKWKEIAIRCSSRSVKCEAIVSDDASPFLKSTPKSKSLESVKLFVGLPLDTVSDCNNV
FT                   NHLKAITAGLKALKLLGVEGIELPIFWGVVEKEAAGKYEWSGYLAVAEIVKKVGLKLHA
FT                   SLSFHGSKQTEIGLPDWVAKIGDAEPGIYFTDRYGQQYKDCLSFAVDDVPVLDGKTPME
FT                   VYRGFCESFKSAFADYMGNTITGITLGLGPDGELKYPSHQHNAKLSGAGEFQCYDKHML
FT                   SALKGYAESTGNPLWGLGGPHDAPAYDQQPNSSSFFSDGGSWESQYGDFFLSWYSSLLT
FT                   SHADRVLSVASSAFSGIGVPLCGKLPLLHQWHKLRSHPSELTAGFYSSNGQDRYEAIAE
FT                   IFAKNSCRMIIPGMDLSDEHQSPESLSSPESLLGHIKTSCKKQGVVVSGQNSSTPVPGG
FT                   FERIVENLKDENVGIDLFTYQRMGALFFSPEHFHAFTVFVRNLSQFELSSDDQASEAEV
FT                   EAETASIGSGTGAPSLQTA"
XX
SQ   Sequence 1895 BP; 500 A; 408 C; 416 G; 571 T; 0 other;
     aaaccaaatc cataatcctc accatatcca caatcctcaa gctatctcct ttgtgtccat        60
     aatcgaaacg ctttttgcga tttatcctaa tcttttttct atcttctgct acaaatttgg       120
     ttcttttttg gttgaatttg gataaaatca taatctcctc ttcaattttc ttgtgaaatg       180
     gaagtttcag tgattggaaa tcctcaagcg aggatctgca gagcagaatt agcttacaga       240
     gagcttggat ttagatttgg ctctgatgta atctccggtg aatcgagaaa tagggttagt       300
     ttctgcaacc aaagctctaa atggaaagag atcgcgatac gttgctcttc gagatctgtc       360
     aaatgtgaag ccatcgtctc cgatgacgct tctccgtttc tcaaatccac tccaaaatct       420
     aaatcgctcg agagtgtaaa attatttgtt gggcttccgt tagacacagt ttcagactgc       480
     aacaatgtga atcacttgaa agctattaca gctgggctta aagctttgaa gctacttggt       540
     gtagaaggta ttgagttacc tatcttttgg ggagttgttg agaaagaagc tgctgggaaa       600
     tatgaatggt ctgggtactt ggcagtagct gagattgtta agaaagtggg acttaagctt       660
     catgcttcac tttctttcca tggatcgaaa caaacagaga taggtcttcc tgattgggtg       720
     gcaaagattg gtgatgctga accagggatc tattttacag atagatatgg acaacagtac       780
     aaagattgtt tgtcgtttgc tgttgatgat gttcctgttc ttgatgggaa gactcctatg       840
     gaggtttaca gaggtttctg tgagagcttc aagtctgctt tcgcagatta catgggcaac       900
     acaatcacgg gaatcacatt aggtttggga ccagacggtg agctgaaata tccttctcat       960
     caacataatg ccaagctctc tggcgcggga gagttccagt gttacgacaa acacatgctt      1020
     tctgctctta aaggctacgc tgaatccact ggaaaccctc tttggggtct cggtggtcct      1080
     cacgatgctc ctgcttacga tcaacagcct aattcctctt cattcttctc agacggcggg      1140
     tcatgggaat ctcagtacgg cgatttcttc ttgtcttggt attcgtctct tctcacctcc      1200
     cacgcagacc gagtcctctc cgttgcttca tctgcattta gcgggattgg agtgcctcta      1260
     tgtgggaagc tacctctctt acaccaatgg cacaagctaa gatctcatcc ttctgagtta      1320
     acagctggat tctacagctc taatggtcag gacaggtacg aggctatcgc agagatcttt      1380
     gcaaagaact cttgtagaat gataatacca ggaatggacc tatccgacga gcaccaatca      1440
     cctgaatctc tctcgagccc cgagtcatta cttggccaca tcaaaacttc ctgcaagaaa      1500
     caaggagtcg ttgtctcagg gcaaaactca tccaccccgg ttcctggtgg gtttgagagg      1560
     atcgttgaga atctgaagga tgagaatgta ggaattgatc tgttcactta ccagagaatg      1620
     ggagcacttt tcttctctcc agagcatttc catgctttca cagtctttgt ccggaacctg      1680
     agccaattcg agttgtcctc agacgatcaa gcctcagagg ctgaggttga ggccgagaca      1740
     gctagcatag gttcaggcac tggtgcacct agtttgcaaa ccgcttaatg aaatgcaaaa      1800
     tcataatttt ttatgtaaat aagaaaagtc tcctgttgtt ttagcattta tatagaatgt      1860
     catattactg taaaattatt tgcaaccatt tcttc                                 1895
//