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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY086258; SV 1; linear; mRNA; STD; PLN; 1292 BP.
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AC   AY086258;
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DT   14-JUN-2002 (Rel. 72, Created)
DT   24-FEB-2006 (Rel. 86, Last updated, Version 5)
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DE   Arabidopsis thaliana clone 230979 mRNA, complete sequence.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1292
RX   PUBMED; 12093376.
RA   Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N.,
RA   Feldmann K.A., Flavell R.B., White O., Salzberg S.L.;
RT   "Full-length messenger RNA sequences greatly improve genome annotation";
RL   Genome Biol. 3(6):RESEARCH0029-RESEARCH0029(2002).
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RN   [2]
RP   1-1292
RA   Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.;
RT   "Features of Arabidopsis genes and genome discovered using full-length
RT   cDNAs";
RL   Plant Mol. Biol. 60(1):71-87(2006).
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RN   [3]
RP   1-1292
RA   Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.;
RT   ;
RL   Submitted (11-MAR-2002) to the EMBL/GenBank/DDBJ databases.
RL   Ceres, Inc, 3007 Malibu Canyon Road, Malibu, CA 90265, USA
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CC   This clone sequence is one of 5,000 Ceres full-length cDNAs made
CC   available to TIGR and Genbank. The following quality assessment of
CC   this set was done by comparison with known proteins: two percent of
CC   the clones are estimated to be 5'-truncated; less than one percent
CC   are 3'-truncated; approximately two percent represent alternative
CC   splice variants, including unspliced introns and spliced exons; one
CC   percent may contain premature stop codons; five percent may have
CC   frame shifts in a coding region. A sequence is considered to be
CC   5'-truncated if it lacks the translation initiation start (ATG). A
CC   sequence is considered to be 3'-truncated if it lacks the
CC   C-terminal end of the encoded protein. Please note that these cDNA
CC   sequences are derived from the Ws or LAer ecotypes and therefore
CC   may contain polymorphisms when compared to sequences from Col-0.
CC   Genset carried out the library production and sequencing of the
CC   full-length clones. Ceres, Inc. carried out the clustering of the
CC   5' sequences, selection of clones, and sequence assembly.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1292
FT                   /organism="Arabidopsis thaliana"
FT                   /mol_type="mRNA"
FT                   /clone="230979"
FT                   /db_xref="taxon:3702"
FT   CDS             29..955
FT                   /codon_start=1
FT                   /product="glycoprotein-specific
FT                   UDP-glucuronyltransferase-like protein"
FT                   /db_xref="GOA:Q8LD18"
FT                   /db_xref="HSSP:1KWS"
FT                   /db_xref="InterPro:IPR005027"
FT                   /db_xref="UniProtKB/TrEMBL:Q8LD18"
FT                   /protein_id="AAM64331.1"
FT                   /translation="MEDVNGSDRFSFEIKQPYVEERLENRKREEAAVDAVSFVAETENG
FT                   KKEVNFVPKKLLIVVTPTYNRAMQAYYLNRVAQTLRLVESPVLWIVVEGNVASFETSEI
FT                   LRKTGVMYRHLVCKRNMTSIKDRGVHQRNTALEHIELHKLDGIVYFADDDNIYSLELFQ
FT                   SLRQISRFGTWPVAMLAQSKNKAILEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAF
FT                   NSTILWDPKRWRRPFSHPTRQLDTVKEGFQETSFIEQVVADESEMEGVPPACSSILNWH
FT                   LHLDALDVPYPQGWAIQKNLQALITMK"
XX
SQ   Sequence 1292 BP; 374 A; 233 C; 338 G; 346 T; 1 other;
     tgtattaggt ttgacacctt tcggaaaaat ggaagatgta aacggttccg atcgattctc        60
     cttcgagatc aaacagccct acgttgaaga acggttggaa aataggaaac gggaagaagc       120
     agctgtagat gcggtgagtt tcgtggcgga gactgaaaat gggaagaagg aggtcaattt       180
     tgtgccgaag aagcttctaa ttgtggtcac accaacgtat aatagagcga tgcaggcgta       240
     ttacttgaac agggttgctc aaacgctgag actagttgag tcgcctgtgc tgtggatagt       300
     ggtggagggt aacgtggcgt cgtttgaaac ctcagagatt ctgaggaaga cgggagtgat       360
     gtacaggcac ttggtttgca agaggaacat gacgagtatc aaggatagag gagtgcatca       420
     gagaaacact gcattggaac atattgagtt gcataagctt gatggaattg tctactttgc       480
     tgatgatgac aatatctact cgcttgagct ctttcaaagc ttgagacaaa tcagccgatt       540
     tgggacttgg cctgttgcta tgctcgcaca aagcaaaaac aaggccatcc ttgaaggtcc       600
     agtatgcaat ggaagtcaag taataggatg gcacactaat gaaaagagta aaagactaag       660
     gaggttccat gttgatatgt cgggatttgc ttttaacagc actatactct gggaccctaa       720
     aaggtggcga cgtccctttt cacatccaac ccgccaacta gacacagtga aggagggttt       780
     ccaggagaca tcatttatag agcaggtggt ggctgatgaa agcgagatgg aaggtgttcc       840
     accagcttgc tcgagtatac tgaactggca tcttcacttg gatgccctgg atgtccctta       900
     tccacaaggg tgggcgatcc aaaagaatct gcaggctctc ataactatga aatagtttga       960
     agatagtttt gactggtttc tacttacccc atgtgctgtg ctcattactg gatatatatc      1020
     aaagaagcat atgaagaatg gaagaagrcg agcgagggta gtttaggata gtgatgaggc      1080
     acgcattttg gataaacgtt gctggaatcg tgagcctccc ctgaatgcaa gagttgcttg      1140
     gaattaaatt gaaggccttg gtgttttagt atgagatgga attatattac cttcggacat      1200
     tgatgattcc acagcattgt attcgcctat ggctaaccaa attcttcttg ttcctttttt      1260
     tttttttgca atgaagaaaa aaattcaccg cc                                    1292
//
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