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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY086184; SV 1; linear; mRNA; STD; PLN; 1200 BP.
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AC   AY086184;
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DT   14-JUN-2002 (Rel. 72, Created)
DT   24-FEB-2006 (Rel. 86, Last updated, Version 4)
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DE   Arabidopsis thaliana clone 22084 mRNA, complete sequence.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1200
RX   PUBMED; 12093376.
RA   Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N.,
RA   Feldmann K.A., Flavell R.B., White O., Salzberg S.L.;
RT   "Full-length messenger RNA sequences greatly improve genome annotation";
RL   Genome Biol. 3(6):RESEARCH0029-RESEARCH0029(2002).
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RN   [2]
RP   1-1200
RA   Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.;
RT   "Features of Arabidopsis genes and genome discovered using full-length
RT   cDNAs";
RL   Plant Mol. Biol. 60(1):71-87(2006).
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RN   [3]
RP   1-1200
RA   Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.;
RT   ;
RL   Submitted (11-MAR-2002) to the EMBL/GenBank/DDBJ databases.
RL   Ceres, Inc, 3007 Malibu Canyon Road, Malibu, CA 90265, USA
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CC   This clone sequence is one of 5,000 Ceres full-length cDNAs made
CC   available to TIGR and Genbank. The following quality assessment of
CC   this set was done by comparison with known proteins: two percent of
CC   the clones are estimated to be 5'-truncated; less than one percent
CC   are 3'-truncated; approximately two percent represent alternative
CC   splice variants, including unspliced introns and spliced exons; one
CC   percent may contain premature stop codons; five percent may have
CC   frame shifts in a coding region. A sequence is considered to be
CC   5'-truncated if it lacks the translation initiation start (ATG). A
CC   sequence is considered to be 3'-truncated if it lacks the
CC   C-terminal end of the encoded protein. Please note that these cDNA
CC   sequences are derived from the Ws or LAer ecotypes and therefore
CC   may contain polymorphisms when compared to sequences from Col-0.
CC   Genset carried out the library production and sequencing of the
CC   full-length clones. Ceres, Inc. carried out the clustering of the
CC   5' sequences, selection of clones, and sequence assembly.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1200
FT                   /organism="Arabidopsis thaliana"
FT                   /mol_type="mRNA"
FT                   /clone="22084"
FT                   /db_xref="taxon:3702"
FT   CDS             331..1152
FT                   /codon_start=1
FT                   /product="unknown"
FT                   /db_xref="GOA:Q8LD60"
FT                   /db_xref="InterPro:IPR004263"
FT                   /db_xref="UniProtKB/TrEMBL:Q8LD60"
FT                   /protein_id="AAM64263.1"
FT                   /translation="MTTIVVLLHTPTFSVFSDEEETESSSPIYLNGSLHLNIHIVSSEA
FT                   KVENFHTLRTRTPIVQLNASEASEAVISRKRRKRKKRKKTKDDLILTDPPPAPRHVLSS
FT                   SERRALSLPPKKALTYAKLEIQRAPEVINDTDLFAPLFRNLSVFKRSYELMELILKVYI
FT                   YPDGDKPIFHEPHLNGIYASEGWFMKLMESNTQFVTKNPEKAHLFYMPYSVKQLQKSIF
FT                   VPGSHNIKPLSIFLRDYVNMLSIKYPFWNRTHGSDHFLVACHDWVSKMFLC"
XX
SQ   Sequence 1200 BP; 364 A; 239 C; 224 G; 373 T; 0 other;
     gaaatctcct atccattctt ctccgtctgc caaaatcccc acttcacgaa tcgcaaaaga        60
     tcaaggttta ttgatctatt gcgaaattag ggtttgtgaa ttcgaatcgg agattaataa       120
     tagattttgt gatggagtgt tcatcacgca tagaagaatc ttgatttcga tctcgatgaa       180
     attaggagtc gagggatttt atttataatt aagatggtga atattaaaag ccctttacgg       240
     ctattcatag aggattctat taaggaatta attaggggtt tcaggagaca aaggatcaaa       300
     tggagaaatg catttcttct tggttctata atgactacca ttgttgttct gcttcataca       360
     ccaacgtttt cagtcttctc tgatgaagaa gaaaccgagt cttcttcgcc tatttacttg       420
     aatggttctc tgcatttgaa tatccatatt gttagtagtg aagcaaaagt tgaaaatttt       480
     catactctta gaacaagaac tcctattgtg caattgaatg cttctgaagc aagtgaagct       540
     gttatttcga gaaaaaggcg aaaaaggaaa aaaagaaaga agacaaaaga tgatctgatt       600
     ctcactgatc ctcctccagc accacgacat gttctatctt cctcagagag acgtgctctt       660
     tccttgccac cgaagaaagc tcttacttat gcaaaactgg agattcagcg tgccccggag       720
     gtcataaatg acacagatct atttgctcca ttgtttagaa acctctctgt tttcaaaagg       780
     agctatgagc ttatggaact gatactaaag gtctacatat atcctgacgg agacaaaccc       840
     atcttccacg aaccgcattt gaacggtata tatgcttcag aaggttggtt tatgaagcta       900
     atggagtcaa acacacagtt tgtcacaaag aaccctgaga aggctcactt gttctacatg       960
     ccatatagtg tgaaacagct tcagaaaagt atctttgttc ctggatcaca taacatcaaa      1020
     cctttatcga tctttcttag agactacgtc aacatgctct ccatcaaata ccccttctgg      1080
     aaccgcactc atgggtcaga tcatttcctt gtcgcttgcc acgattgggt atcgaaaatg      1140
     tttctatgtt aaagaccaat gggtttactt ccctcatttt tatgttatga tctctatttc      1200
//
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