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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY085129; SV 1; linear; mRNA; STD; PLN; 1636 BP.
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AC   AY085129;
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DT   14-JUN-2002 (Rel. 72, Created)
DT   24-FEB-2006 (Rel. 86, Last updated, Version 4)
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DE   Arabidopsis thaliana clone 1324 mRNA, complete sequence.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1636
RX   PUBMED; 12093376.
RA   Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N.,
RA   Feldmann K.A., Flavell R.B., White O., Salzberg S.L.;
RT   "Full-length messenger RNA sequences greatly improve genome annotation";
RL   Genome Biol. 3(6):RESEARCH0029-RESEARCH0029(2002).
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RN   [2]
RP   1-1636
RA   Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.;
RT   "Features of Arabidopsis genes and genome discovered using full-length
RT   cDNAs";
RL   Plant Mol. Biol. 60(1):71-87(2006).
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RN   [3]
RP   1-1636
RA   Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.;
RT   ;
RL   Submitted (11-MAR-2002) to the EMBL/GenBank/DDBJ databases.
RL   Ceres, Inc, 3007 Malibu Canyon Road, Malibu, CA 90265, USA
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CC   This clone sequence is one of 5,000 Ceres full-length cDNAs made
CC   available to TIGR and Genbank. The following quality assessment of
CC   this set was done by comparison with known proteins: two percent of
CC   the clones are estimated to be 5'-truncated; less than one percent
CC   are 3'-truncated; approximately two percent represent alternative
CC   splice variants, including unspliced introns and spliced exons; one
CC   percent may contain premature stop codons; five percent may have
CC   frame shifts in a coding region. A sequence is considered to be
CC   5'-truncated if it lacks the translation initiation start (ATG). A
CC   sequence is considered to be 3'-truncated if it lacks the
CC   C-terminal end of the encoded protein. Please note that these cDNA
CC   sequences are derived from the Ws or LAer ecotypes and therefore
CC   may contain polymorphisms when compared to sequences from Col-0.
CC   Genset carried out the library production and sequencing of the
CC   full-length clones. Ceres, Inc. carried out the clustering of the
CC   5' sequences, selection of clones, and sequence assembly.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1636
FT                   /organism="Arabidopsis thaliana"
FT                   /mol_type="mRNA"
FT                   /clone="1324"
FT                   /db_xref="taxon:3702"
FT   CDS             77..1465
FT                   /codon_start=1
FT                   /product="unknown"
FT                   /db_xref="GOA:Q8LEZ9"
FT                   /db_xref="InterPro:IPR004263"
FT                   /db_xref="UniProtKB/TrEMBL:Q8LEZ9"
FT                   /protein_id="AAM61682.1"
FT                   /translation="MASLTSNKPRNFGAYSHYATPCTLTHQIGALFLVVSTFFVTRLFD
FT                   QWFSESNSVTPVIDLRRTSSSYGITTDKGIIRWPERGYGSHLSLKIYVYDENEIDGLKE
FT                   LLYGRDGSVKTTACLKGQWGSQVKIHKLLLESKFRTIKKDEADLFFVPAYVKCVRMLGG
FT                   LNDKEINQTYVKVLSQMPYFRRSGGRDHIFVFPSGAGAHLFRSWSTFINRSIILTPEAD
FT                   RTDKKDTTAFNSWKDIIIPGNVDDAMTKNGQPDVQPLPLSKRKYLANYLGRAQGKAGRL
FT                   KLIDLSKQFPDKLECPDLKFSGTEKFGRTTYFEHLRNAKFCLAPRGESSWTLRFYESFF
FT                   VECVPVLLSDHAELPFQNVIDYAQVSIKWPSTRIGSEFLDYLASISDRDIEGMIARGRK
FT                   IRCLFVYGPDSAPCSAVKGILWELQRKVRHFQQSTETFWLHNGSFVNRELVQFSSWRPP
FT                   MPLP"
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SQ   Sequence 1636 BP; 467 A; 319 C; 368 G; 482 T; 0 other;
     aagatctaag cgaaaacaaa aaaatgcctt aaaacatttg aagaagcaaa acgaagaaac        60
     agtgagagag atagaaatgg cgagcttaac tagcaataag cctagaaact ttggtgcgta       120
     tagtcactac gccactccct gcactctcac gcatcagatt ggagctcttt ttctcgtcgt       180
     ctctaccttc ttcgtcacta ggcttttcga tcagtggttc tcggaatcca attccgttac       240
     tccggtgatt gatctccgtc gtacttcttc ttcttacgga atcacaactg ataaaggtat       300
     tatacggtgg ccggagcgag gttatgggtc tcacctctcg ctgaagatct acgtttatga       360
     tgagaatgag atcgacggtc ttaaagagct gttgtacggg agggatggta gtgttaagac       420
     caccgcatgc ttgaaaggtc aatggggatc tcaggttaaa attcacaagt tgcttttgga       480
     gtccaaattt aggacgatta agaaagatga agcggatttg ttctttgtgc cagcttatgt       540
     taaatgtgtg agaatgttgg gaggtcttaa tgacaaggag atcaatcaga cctatgtcaa       600
     ggttttgagt caaatgccgt atttccgaag atctggtggt cgtgatcata tatttgtttt       660
     tccgagtggt gctggagctc acttgtttag atcctggtca acatttatca accgctctat       720
     tatcctcact cccgaggctg accggactga caagaaagac acaactgcct ttaattcatg       780
     gaaagatata atcataccag gaaacgtcga tgatgctatg actaaaaatg gacaacctga       840
     tgttcagcct ttgcctctgt caaagaggaa gtatttagca aattatttag gtcgtgcaca       900
     agggaaggct ggtcgactta aattgattga cctatcaaag caatttccag ataagctaga       960
     atgtccagat ttgaagttta gcggaactga aaagtttgga aggacaacat attttgaaca      1020
     tctgaggaat gccaagttct gcctcgctcc tcgtggggaa tcatcatgga cacttcgctt      1080
     ttatgaatca ttctttgtgg aatgtgtccc ggttctttta tctgaccacg ccgagctgcc      1140
     tttccagaat gttatcgact atgcccaagt atcgatcaaa tggccatcaa ctcgaatagg      1200
     ctcagagttt cttgattact tagcttcaat atcagataga gacatagaag gaatgatagc      1260
     ccgaggtcgg aagattagat gtttgtttgt gtacggtcca gattccgcac cctgcagtgc      1320
     ggttaaaggg attctatggg agcttcaacg caaagttaga catttccagc aatcgactga      1380
     gacgttttgg ctgcacaatg gcagttttgt gaatagagaa ctggtccagt tcagtagctg      1440
     gagacctcct atgcctctac cttgaccggt ttcaacattc cactagaata tcttgtgttt      1500
     acgaaacaaa atgaatgata catttgagta cagttttttt gtgaacttga tttttttgta      1560
     catatcactc ttcagtggaa tttgtttgac taaaatttga tagaaaaatg acgaaccaac      1620
     aaaattgatg gcttcc                                                      1636
//
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