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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY084812; SV 1; linear; mRNA; STD; PLN; 1172 BP.
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AC   AY084812;
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DT   14-JUN-2002 (Rel. 72, Created)
DT   24-FEB-2006 (Rel. 86, Last updated, Version 5)
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DE   Arabidopsis thaliana clone 118484 mRNA, complete sequence.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1172
RX   PUBMED; 12093376.
RA   Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N.,
RA   Feldmann K.A., Flavell R.B., White O., Salzberg S.L.;
RT   "Full-length messenger RNA sequences greatly improve genome annotation";
RL   Genome Biol. 3(6):RESEARCH0029-RESEARCH0029(2002).
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RN   [2]
RP   1-1172
RA   Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.;
RT   "Features of Arabidopsis genes and genome discovered using full-length
RT   cDNAs";
RL   Plant Mol. Biol. 60(1):71-87(2006).
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RN   [3]
RP   1-1172
RA   Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.;
RT   ;
RL   Submitted (11-MAR-2002) to the EMBL/GenBank/DDBJ databases.
RL   Ceres, Inc, 3007 Malibu Canyon Road, Malibu, CA 90265, USA
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CC   This clone sequence is one of 5,000 Ceres full-length cDNAs made
CC   available to TIGR and Genbank. The following quality assessment of
CC   this set was done by comparison with known proteins: two percent of
CC   the clones are estimated to be 5'-truncated; less than one percent
CC   are 3'-truncated; approximately two percent represent alternative
CC   splice variants, including unspliced introns and spliced exons; one
CC   percent may contain premature stop codons; five percent may have
CC   frame shifts in a coding region. A sequence is considered to be
CC   5'-truncated if it lacks the translation initiation start (ATG). A
CC   sequence is considered to be 3'-truncated if it lacks the
CC   C-terminal end of the encoded protein. Please note that these cDNA
CC   sequences are derived from the Ws or LAer ecotypes and therefore
CC   may contain polymorphisms when compared to sequences from Col-0.
CC   Genset carried out the library production and sequencing of the
CC   full-length clones. Ceres, Inc. carried out the clustering of the
CC   5' sequences, selection of clones, and sequence assembly.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1172
FT                   /organism="Arabidopsis thaliana"
FT                   /mol_type="mRNA"
FT                   /clone="118484"
FT                   /db_xref="taxon:3702"
FT   CDS             47..1003
FT                   /codon_start=1
FT                   /product="unknown"
FT                   /db_xref="GOA:Q8LFJ4"
FT                   /db_xref="InterPro:IPR002659"
FT                   /db_xref="UniProtKB/TrEMBL:Q8LFJ4"
FT                   /protein_id="AAM61378.1"
FT                   /translation="MKSSPRSEGRKFIIPSFFFIIALCVLAFINGIRFDSLLSFGRCAL
FT                   SNVPMNNGSSETPLLSSSPVDDEIRILIGILTLPDQYSRRHFLRMIYGTQNVPDGVKVD
FT                   VKFVFCNLTKEDQKVLVALEIMRYDDIIILNCNENMNKGKTYTYFSSLPDIFNETDAQK
FT                   PPYHYVMKADDDTYIRLESLVASLRPLPREDLYYGYVIPCPSMDPFVHYMSGMGYLVSW
FT                   DIAVWLKDSEIPKKHLEGPEDKVFGDWIREGRRGKNRFNAKWSMYNFPEPPTRCTHELW
FT                   PDTIAVHLLKNQEKWIRTLNYFNVTSNLKPSKLYHIP"
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SQ   Sequence 1172 BP; 340 A; 224 C; 228 G; 380 T; 0 other;
     tttcctctgc ttctcaacat ctctaagctt tcattgaaca aggaatatga aatcttctcc        60
     aagatcagaa ggaagaaagt tcattatccc ttctttcttc ttcatcatag ctctttgtgt       120
     actagctttc atcaacggga tcagattcga tagcttattg agttttggaa gatgtgcttt       180
     gtcaaatgtt cctatgaata atggttcatc agagactcca ttgttgtctt cttctcctgt       240
     tgatgatgag attaggattc ttattggaat ccttacactt cctgatcagt attcacgtcg       300
     ccattttctc cggatgatct acgggacaca aaatgttccg gacggtgtta aggttgatgt       360
     gaagtttgtg ttctgtaatt tgactaaaga agaccagaaa gtgcttgttg ctttggagat       420
     tatgcgttat gatgacatca ttatactcaa ctgcaatgag aatatgaaca aaggcaagac       480
     ttacacatac ttctcaagct taccagacat attcaatgag accgatgcac aaaaaccacc       540
     gtaccattac gtaatgaaag ccgacgacga cacatacata agactagaaa gtctcgttgc       600
     atctttgaga ccactccctc gagaagatct ttactacggc tatgtaattc catgtccaag       660
     catggaccca tttgttcatt acatgtcagg aatgggttac ttagtgtcat gggatattgc       720
     ggtttggctc aaagactcgg aaattcccaa gaaacatcta gaaggtcctg aagacaaagt       780
     gtttggcgat tggattcgag aaggaagacg aggaaaaaac cggtttaacg ctaagtggtc       840
     catgtataat ttccctgagc caccgactag atgcacacat gagctttggc cagacactat       900
     tgccgttcat ttgttaaaga accaagagaa gtggatacgt acattgaact atttcaatgt       960
     tactagcaat ctcaagcctt ctaaactata ccacataccg tagatagtct ttttgtttgc      1020
     ttttaccgga ttcttatatt tatactttac attgtttctc ttgaaattgg taagaaatgt      1080
     tctttaataa tcgatttttt gggagggatt tgtagtacac taattaagga ttgttcaaac      1140
     atgtttaata gtcaatctgg ttgggttttt tc                                    1172
//
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