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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY081684; SV 1; linear; mRNA; STD; PLN; 1459 BP.
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AC   AY081684;
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DT   15-APR-2002 (Rel. 71, Created)
DT   15-APR-2002 (Rel. 71, Last updated, Version 1)
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DE   Arabidopsis thaliana unknown protein (At1g34270) mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1459
RA   Southwick A., Karlin-Neumann G., Nguyen M., Lam B., Miranda M., Palm C.J.,
RA   Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R., Chung M.K.,
RA   Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C., Lin J., Liu S.X.,
RA   Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RT   ;
RL   Submitted (27-FEB-2002) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
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CC   comment 'e-mail for correspondence: arab@sequence.stanford.edu
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Nguyen,M.,
CC   Southwick,A., Karlin-Neumann,G.,  Lam,B., Miranda,M., Palm,C.J.,
CC   Bowser,L., Jones,T., Banh,J., Chen,H., Cheuk,R., Chung,M.K.,
CC   Kim,C., Lin,J., Liu,S.X., Pham,P.K., Sakano,H., Shinn,P.,
CC   Yamada,K., Ecker,J., Theologis,A. and Davis,R.W.
CC   Nguyen,M, (SSP/Stanford) and Seki,M. (RIKEN GSC) contributed
CC   equally to this work.  Shinozaki,K. (RIKEN GSC) and Davis,R.W.
CC   (SSP/Stanford) contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1459
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="1"
FT                   /mol_type="mRNA"
FT                   /clone="U15070"
FT                   /note="This clone is in pENTR/SD-dTopo   This is a cloned
FT                   PCR product using RIKEN clone RAFL11-01-E22 (AY054544) as a
FT                   template ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1434
FT                   /codon_start=1
FT                   /gene="At1g34270"
FT                   /product="unknown protein"
FT                   /db_xref="GOA:Q9XID1"
FT                   /db_xref="InterPro:IPR004263"
FT                   /db_xref="UniProtKB/TrEMBL:Q9XID1"
FT                   /protein_id="AAM10246.1"
FT                   /translation="MVPKIASMASTRPLCSIPSIFLSFSLLFVVSLLFFFSNSLISNPN
FT                   PSISHNTLQNGINVYVAELPRSLNYGLIDKYWSSSTPDSRIPSDPDHPTRKTHSPDKYP
FT                   PYPENPLIKQYSAEYWIMGDLETSPEKRIGSFAKRVFSESDADVVFVPFFATLSAEMEL
FT                   GNGKGSFRKKSGNEDYQRQRQVLDFVKNTKAWKRSNGRDHVFVLTDPVAMWHVREEIAL
FT                   SILLVVDFGGWFRQDSKSSNGTSLPERIQHTQVSVIKDVIVPYTHLLPRLDLSQNQRRH
FT                   SLLYFKGAKHRHRGGLIREKLWDLLVNEPGVVMEEGFPNATGREQSIRGMRNSEFCLHP
FT                   AGDTPTSCRLFDAIQSLCIPVIVSDTIELPFEGIIDYSEFSVFASVSDALTPKWLANHL
FT                   GRFSEREKETLRSRIAKVQSVFVYDNGHADGIGPIEPNGAVNHIWKKVQQKVPMVKEAV
FT                   IRERRKPAGASVPLRCQCI"
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SQ   Sequence 1459 BP; 404 A; 312 C; 326 G; 417 T; 0 other;
     atggttccta agatcgcatc aatggcgtct actagacctc tctgttcaat tccttctatc        60
     ttcctctctt tctctctcct cttcgtcgtc tctcttctct tcttcttctc caattcctta       120
     atctccaatc caaatccgag catttcacac aacactctcc aaaacggtat caatgtctat       180
     gtagctgagc ttccaagatc cctaaactat ggtcttatcg acaaatactg gtcctcttct       240
     actccagatt cacgtatacc cagtgaccca gatcacccga cccgtaaaac ccattcaccc       300
     gataaatacc caccgtaccc agagaacccg ttgatcaagc aatacagtgc tgagtactgg       360
     atcatgggag acctagaaac ctcaccagag aaacgaattg gatcttttgc taaaagggtt       420
     tttagtgaat ctgacgctga tgtagtcttc gtgcctttct ttgcgacgtt aagtgcagag       480
     atggagcttg gaaatggtaa aggttcgttt agaaagaagt ctggtaacga agattatcaa       540
     agacagagac aagtgcttga ttttgtcaag aacactaaag cttggaaacg atctaatggt       600
     cgtgatcacg tttttgttct aacggaccct gttgcaatgt ggcatgttcg tgaggagatt       660
     gctttatcta ttcttcttgt ggtggatttt ggaggatggt ttaggcaaga ttctaagtcg       720
     tctaatggga ctagcttgcc tgagaggatt cagcatactc aagtctctgt cattaaggat       780
     gtgattgttc catatacgca tttgcttcct agactggatt tgtctcagaa ccagagacgt       840
     catagccttc tttattttaa aggcgctaag cacagacatc ggggagggtt aatcagagaa       900
     aaactatggg acttgctggt caatgagcct ggcgttgtca tggaagaagg ttttcctaat       960
     gcaacaggaa gggaacagtc gataagagga atgagaaact cagagttctg cttacatcca      1020
     gctggtgaca ctcccacttc atgccgtctc tttgatgcca ttcaaagtct atgcatccct      1080
     gtgattgtca gcgacaccat agagctcccg tttgagggaa taatcgatta ctcagaattc      1140
     tcggtttttg cctctgtaag tgatgcatta acacctaaat ggttggctaa tcatctcgga      1200
     aggttctctg aaagagagaa ggaaacattg agaagtagaa tagcaaaggt tcagtcagtt      1260
     tttgtgtatg ataatggtca tgccgatggg attggaccta ttgaacccaa tggtgcggtg      1320
     aatcacatat ggaagaaggt tcagcagaag gtgccaatgg tgaaggaggc agtgattagg      1380
     gagaggagaa aaccagcagg tgcttccgtt ccacttcgat gtcaatgtat ctaaataatg      1440
     caaccaatcc aaaagatag                                                   1459
//
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